LOC110495488 (LOC106575654)


Basic Information

Item Value
gene id LOC110495488
gene name LOC106575654
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 13865384 ~ 13874562 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570762.2
ATGTTCTCATGATGCGGTACAGAGCTCAATTCAGCCTCTGCCCCGCTATTGCGTCTCAgaccacattttcggatcaagcataaattggctcttAGCCACGGCCTCGCGAGCGTTACAGGTGCGCGCCAACAGGTGATTTTGATTCGATTGTCACAAAACGCCTAGTTTAGGTTTCAACACAACAAGAAAAATGGATATCTCAAAGATTTCCGTTGCAAACAGGAGAAACAGAAATGCAACCAAAGGGAAAAAAGCTACTCACAAGTCAAATGTTTCACCGGCGATCAGTAGACTCATTCGAGACCCTTCAAATCATATTCCATTGGGACGACAACTTCAGAGGACGCCGCCAACGTCAGAGTTGAAAATAACTCGGCCTTTGAGCTTTGAAACACAAGCGATTGAAACCACCCCTGGGCAAGAGCCCTTGTCTCCCGCGTTAAATATGACCATGGACCTTTACACAATCGAGCCTGCAGAAACTGAAACATGCCGACGGTCTCGCATCACTTCAAGCACACTCTGTTCAGGCAGTGTGCTGGAAGAGGACCCCTACTCATTGATAAGAGGCATGCAGGGCTATGAGGTTACCCCAGCAGACCTTGTATTCCTGAAGAGAGCCAGGCAGGAGAGGCAGATCAACGCCTTACAGAGAGAGCTGGATGAGTTACTGAGGCAGCGGAGGAACCAGATGCTGGCCAGGGATCTGTCCTTGGCCTCCAGAGAGAAGATCCAAACTGACCTTGATGAGATCCTGTCCTGTGAGCAGACTGTTCAAATGGGGCAAGTGTTCCTCTCGAGGAAGCTGAGCTCAACGGAGGTAGAGGCCCTGGACTCCAAGTCCCTCCTGGCCCAGATAAAGACTGCTGATGTCCAGCAAGCTGTAGAGGAGGAACAAGCTGAGATCACTGCACTAGAGAACAGAGTGGCCAGAGCCCTGGAGCTCAGagagagaggggagcaaagACAACAGGAGATTGAGAATCGGAACAGAGCCATCCTCACGAAAAAGGCAAACATCAAGCATCTGATGAAGGAACTATCAGAGCTCAAATCCCAGCTGGCTGGGGCAGAGGAATCTTTGCTAGCCATTCAAGGCAAGATGGACACTTTGAAAGACACCGAAAAAGAGGAAGACACAGGTCCCCAGGAGGCATTGCAAGTCGCCCCAAGCCAAGCAAAAGCTCCCAAAAAGGCACCCAAGACAAAAAGGAATGGTGGAGAAACAATTACCCAACAGGCTTCTCATGTCCGAATTAAAGCTGAAAATACACCTACCATAGTTGGAGAGCCACATATGGCCAGTGGTCTCAGACGATCTAAGAGAATAGCTACCAAGAAGAGCTGCGTTGAGAATAAGCCTGTTTTAAGGAAAACTCGCCCTGTCAAAGCAAGCATTTCACTTTGAGAATTTTTCTCCACTTTTCCTGAAACTTTTGAGTTTTAAGGAGTTGTTTTGGCTTGTTTGGTACTGTGGTTAGGTTTCCATCCATTTGACAACAGATTTTAATGCAGATATTCAAAAGTCCGCACAGAAACATTATATGCATTTTTCCCACCAGTGGATAGTGTTGTGCGTGACAGTGCACATAACACTTTTgcgcttaagttttcatgtacagaataaaataaaacagaCGTTTTAATGTGTTTCCATAGCATTTTCAATTCTATGGATGATTTTGTcacacaaactgcaataaaaagCACACTTGCCCAAC

Function

NR:

description
early endosome antigen 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570762.2 True 1721 mRNA 0.47 8 13865384 13874562

Neighbor

gene id symbol gene type direction distance location
LOC110495489 LOC106575650 coding downstream 31978 13803381 ~ 13833406 (-)
LOC110495490 LOC106574769 coding downstream 65378 13795409 ~ 13800006 (-)
LOC110495492 NA coding downstream 86553 13730360 ~ 13778831 (-)
LOC110497005 LOC106574767 coding downstream 153440 13707394 ~ 13711944 (-)
LOC110495493 NA coding downstream 165754 13685206 ~ 13699630 (-)
LOC110495482 LOC106575623 coding upstream 631665 14506227 ~ 14507592 (-)
LOC110495480 LOC108249344 coding upstream 656019 14530581 ~ 14578088 (-)
LOC110495477 fundc1 coding upstream 706400 14580962 ~ 14587615 (-)
LOC110495478 NA coding upstream 768513 14643075 ~ 14662564 (-)
LOC110497004 LOC106575641 coding upstream 797604 14672166 ~ 14740105 (-)
G1518861 NA non-coding downstream 145215 13718110 ~ 13720169 (-)
G1518850 NA non-coding downstream 200663 13664465 ~ 13664721 (-)
G1518797 NA non-coding downstream 278854 13586214 ~ 13586530 (-)
G1518784 NA non-coding downstream 299372 13565782 ~ 13566012 (-)
G1518783 NA non-coding downstream 300604 13564558 ~ 13564780 (-)
G1518953 NA non-coding upstream 18810 13893372 ~ 13893872 (-)
G1518992 NA non-coding upstream 95360 13969922 ~ 13970867 (-)
G1518991 NA non-coding upstream 97021 13971081 ~ 13972538 (-)
G1518994 NA non-coding upstream 98756 13973318 ~ 13973544 (-)
G1519364 NA non-coding upstream 285718 14160280 ~ 14160701 (-)
G1518858 LOC106574768 other downstream 123817 13739451 ~ 13741567 (-)
bcor LOC106574692 other downstream 462763 13312628 ~ 13402659 (-)
LOC110513917 LOC106575727 other downstream 888943 12933662 ~ 13031321 (-)
LOC110495512 LOC106574713 other downstream 954542 12898791 ~ 12910954 (-)
G1518019 LOC106575703 other downstream 1265053 12583728 ~ 12600331 (-)
G1519529 LOC106575569 other upstream 610117 14484679 ~ 14486096 (-)
G1520339 NA other upstream 1401501 15276063 ~ 15277021 (-)

Expression


Co-expression Network