LOC110495485 (LOC106575653)


Basic Information

Item Value
gene id LOC110495485
gene name LOC106575653
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 13975110 ~ 13979887 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570759.2
CCTGTTTCTACATTGACCAATCAGGTTGATGGGTAATGAACCACGTCCGCGCGCTAAATTCTTGCGGCAGTATTTTGTCATACATTCGCGGGAGAACAGCCTTGCAAAGTTTTGTCAGCAGCTATTTAATTTTATGGCATTTATTTTAGGTACTTGGCATGCGGTAGCTGCGTGTTATTAGTACAACCTTCACAGTTTGTTGGCTGCACACTACTAGACAGTTCCCTAGCTAGCTAGACAGCTAACAACATAACTGGCAAACTTTTTGCAAGAGGTCTGTCGTTTTGACCCAAAGTATCTAATATGGCAACTATGTGTCACTCAAGACGTGCCCTGATGGAAATCCCAGCTCCACAGCCGAAAATTGCAGCTCGAATGAGAAGGTCCTACCTGGAGGTTCTAAGTTCACGCATAGCTCCATTCTCAACCACTTCTAGAGGCAGAAACCTGACCAGCAACTCAAAACTGGACCCAGCCATATACAGAACAGGGAGTAGTCGGAGTGAGGCCCAAAGTGAGAGAATGGAAGACAACCAGACACCCCTGTCCAACCAGCAGCTTGTGCAGCTCATAAGATCTTTCATCCTAGTAGAACAGGGGCAGAGGCAGGAGCCCAGAGCCCTCACTACAGACCTGAAGCCGTTACAGGAGGACTTGCACTTGAAAAAGACCAATGTCTACAGATCTATACCCTACTCACGCCTGGGGTCCAACAGAGACGCGCACTGTTACAGAAAGGCATATCCACACCTGGTGGTGTTTAAAGTTTCCTGCCAGGAGTGGGGTCAGCTGCTGCTGCAGAACGAGGAGTGGGAGTCTGCTCTGGAGCACGCCCTAGTGGCGTGGAGGTACACCAGTGAGCTGCCACAGTGGGACACCAGCAGCCACAATTTGGTGAGGGAACAGTGTTACAGCATGCTGGCAGCCCACTGCATCACAGCTCTACAGCACTACTGCCCAGACCTCAGCAAAGCCATAGAGCTGCACAGGAGGTTTAAAATGGCACAGCTGCACAGTCAGTTGATCTCTCCTTGTATTCAGGAGCTGGAGAGAAGCCTCGGCGAAGCACAGGTTTGTTCCATGAACACCCACTGAAATGGCCAACACTAAGATCAGCTGACAACAATCAGCACGGCTTCCAAGTCTAGGGGGTTGCACTATTGAACAGCGTATATCAGTGGTTGCCATTCATCTATGTTTGGTATCCTTGCCTTGTGTTGCGCTATTCCCCCTTGCCTTGCCTACAGTATTCCCTACAGTAGATATAAGAAAGCTTTGATGCATTTTGGTAAGCTGTTTTTTAAAATATGAATTTAAGCTTTTTGTATTAAGTTGTTTTGTAAAATGTGTTTATTGCCATTGAAATATTGAATGTTATCACAAGGAAATGATGAAATGGCCTTTAAAATGTGAAAGGCTGTCAGAGAAATTATGAACTGTCCTTTTCACCAAGATGTTTTATATGTGGGGGATGTTTTTGTGGATGTGTTGAAAAATGGCAAGATACATGAAACAGCTGCCTTATTTCAACTTGGCTGAATGCTAcctgttttgtaaatatttgtcTAAAGTAACTGTTTTGCACTGTTTTCTTCATCCTGGAAACTTGACATTTTGATAATAGAATCTAATTTAATAAAATTCTACTTTTTCAACA
>XM_021570758.2
TTTCTACATTGACCAATCAGGTTGATGGGTAATGAACCACGTCCGCGCGCTAAATTCTTGCGGCAGTATTTTGTCATACATTCGCGGGAGAACAGCCTTGCAAAGTTTTGTCAGCAGCTATTTAATTTTATGGCATTTATTTTAGGTACTTGGCATGCGGTAGCTGCGTGTTATTAGTACAACCTTCACAGTTTGTTGGCTGCACACTACTAGACAGTTCCCTAGCTAGCTAGACAGCTAACAACATAACTGGCAAACTTTTTGCAAGAGGTCTGTCGTTTTGACCCAAAGTATCTAATATGGCAACTATGTGTCACTCAAGACGTGCCCTGATGGAAATCCCAGCTCCACAGCCGAAAATTGCAGCTCGAATGAGAAGGTCCTACCTGGAGGTTCTAAGTTCACGCATAGCTCCATTCTCAACCACTTCTAGAGGCAGAAACCTGACCAGCAACTCAAAACGTGGGCATTCATTGGACCCAGCCATATACAGAACAGGGAGTAGTCGGAGTGAGGCCCAAAGTGAGAGAATGGAAGACAACCAGACACCCCTGTCCAACCAGCAGCTTGTGCAGCTCATAAGATCTTTCATCCTAGTAGAACAGGGGCAGAGGCAGGAGCCCAGAGCCCTCACTACAGACCTGAAGCCGTTACAGGAGGACTTGCACTTGAAAAAGACCAATGTCTACAGATCTATACCCTACTCACGCCTGGGGTCCAACAGAGACGCGCACTGTTACAGAAAGGCATATCCACACCTGGTGGTGTTTAAAGTTTCCTGCCAGGAGTGGGGTCAGCTGCTGCTGCAGAACGAGGAGTGGGAGTCTGCTCTGGAGCACGCCCTAGTGGCGTGGAGGTACACCAGTGAGCTGCCACAGTGGGACACCAGCAGCCACAATTTGGTGAGGGAACAGTGTTACAGCATGCTGGCAGCCCACTGCATCACAGCTCTACAGCACTACTGCCCAGACCTCAGCAAAGCCATAGAGCTGCACAGGAGGTTTAAAATGGCACAGCTGCACAGTCAGTTGATCTCTCCTTGTATTCAGGAGCTGGAGAGAAGCCTCGGCGAAGCACAGGTTTGTTCCATGAACACCCACTGAAATGGCCAACACTAAGATCAGCTGACAACAATCAGCACGGCTTCCAAGTCTAGGGGGTTGCACTATTGAACAGCGTATATCAGTGGTTGCCATTCATCTATGTTTGGTATCCTTGCCTTGTGTTGCGCTATTCCCCCTTGCCTTGCCTACAGTATTCCCTACAGTAGATATAAGAAAGCTTTGATGCATTTTGGTAAGCTGTTTTTTAAAATATGAATTTAAGCTTTTTGTATTAAGTTGTTTTGTAAAATGTGTTTATTGCCATTGAAATATTGAATGTTATCACAAGGAAATGATGAAATGGCCTTTAAAATGTGAAAGGCTGTCAGAGAAATTATGAACTGTCCTTTTCACCAAGATGTTTTATATGTGGGGGATGTTTTTGTGGATGTGTTGAAAAATGGCAAGATACATGAAACAGCTGCCTTATTTCAACTTGGCTGAATGCTAcctgttttgtaaatatttgtcTAAAGTAACTGTTTTGCACTGTTTTCTTCATCCTGGAAACTTGACATTTTGATAATAGAATCTAATTTAATAAAATTCTACTTTTTCAACA

Function

NR:

description
uncharacterized protein LOC110495485 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570759.2 False 1657 mRNA 0.45 5 13975110 13979887
XM_021570758.2 True 1665 mRNA 0.45 5 13975114 13979887

Neighbor

gene id symbol gene type direction distance location
LOC110495487 LOC106574771 coding upstream 5921 13883956 ~ 13969189 (+)
LOC118941229 NA coding upstream 163822 13811236 ~ 13811288 (+)
LOC110495495 LOC106574775 coding upstream 352292 13592980 ~ 13622818 (+)
LOC110497006 LOC106574795 coding upstream 418758 13520158 ~ 13556352 (+)
LOC110495496 NA coding upstream 457034 13516342 ~ 13518076 (+)
LOC110495483 LOC106575569 coding downstream 107171 14087058 ~ 14485956 (+)
LOC110495481 LOC106574739 coding downstream 577089 14556326 ~ 14558589 (+)
LOC110495476 LOC106575616 coding downstream 608764 14588651 ~ 14643860 (+)
LOC110495457 LOC106573985 coding downstream 773549 14753436 ~ 14764586 (+)
LOC110496915 LOC106575634 coding downstream 799203 14779090 ~ 14780827 (+)
G1518993 NA non-coding upstream 2147 13972760 ~ 13972963 (+)
G1518612 NA non-coding upstream 2692 13971588 ~ 13972418 (+)
G1518614 NA non-coding upstream 4220 13970547 ~ 13970890 (+)
G1518613 NA non-coding upstream 5353 13969305 ~ 13969757 (+)
G1518557 LOC106575650 non-coding upstream 168417 13803381 ~ 13806693 (+)
G1519100 NA non-coding downstream 120878 14100765 ~ 14104118 (+)
G1519138 NA non-coding downstream 195712 14175599 ~ 14175914 (+)
G1519139 NA non-coding downstream 196070 14175957 ~ 14176276 (+)
G1519141 NA non-coding downstream 198101 14177988 ~ 14178201 (+)
G1519142 NA non-coding downstream 200071 14179958 ~ 14180180 (+)
G1517545 NA other upstream 787030 13187101 ~ 13188080 (+)
G1517457 NA other upstream 1032616 12937523 ~ 12942494 (+)
G1517456 LOC106575727 other upstream 1038832 12934654 ~ 12936278 (+)
G1517414 LOC106575752 other upstream 1102947 12833651 ~ 12872163 (+)
G1517150 NA other upstream 2034005 11940062 ~ 11941897 (+)
G1519096 NA other downstream 454875 14434762 ~ 14436120 (+)
G1519538 NA other downstream 518899 14498786 ~ 14499137 (+)
G1519733 NA other downstream 834095 14813982 ~ 14814886 (+)
il8r il8r other downstream 918369 14898154 ~ 14901354 (+)

Expression

LOC110495485(LOC106575653) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 250.
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LOC110495485(LOC106575653) Expression in each Bioproject

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LOC110495485(LOC106575653) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network