LOC110495478


Basic Information

Item Value
gene id LOC110495478
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 14643075 ~ 14662564 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002469427.2
ATCAGTATGGACTGGGACTGCCACAACATGCACTGCTCACAGACAGActgaccaacagacagacagatggacagacagacagaggacaaCACCTATACTCTGTAggctactgcagagagagagagaggaaaagagagtgaGATTGCCACAACAGGTTTCCATAGactgctgtagagagagagagtgagagggagacggagagatgaGAAAATAGAGAGAATTGAAGATCAGATAATGAAAGAACAGTGACCAGtgaatggagagaagagagagaagataaaTAATAACAAAAAATATGCAAAACAAGACTAAGACAAAAACCGAcattgtgaagagagagagaaagagggagagagagaggagccagagcaCGTTGTTCGGAGTGTTCTGAGCAGACACTGTCTGGACCATGTGCACAGAGGAAAGAAAGGTGACATGGAAAAGAGCtgccactgagagagagagaggaagagagagagaggaagagagagagagagtgtgtgaatgGTGAAGCTGGACTGAAAGAGATGCCAGGAGCCCTAGGTCTGGGAATCACACACATCAAACACAGTATGAAGCTGCCTGGACCGGATGATGGCACTGCTATACAGACTGGCTGCACCTTGCAGAAAAACTCCCTCTTTGTAGATGAGTGGCCCAGTCAGGATTACTTACTGCAACGGTCTTAACACGCAGTGCTCCATCTCAGAGGCTAAAAACAGACACGGAGACACCCTTAACAAGGCCTTATTATATTACTAGTGATCCTCTGCTGAATGTGTTTAAATAAGTCACGAGCTCCCAGGTATTCAGTGCTAACCCAGTGACAAGAGACGGCCGTCTTTGCTTGGACTGTGCCAAGCAAGGTTGGTCATTTTGGGTTGGTGTCTGTCAGCTGCTCAGTAGTCAGTGTAGATCCTGTGGGGCAGTCAGCAGCTACATCTGGCTACTGGGTCGTTGATGGCTGCCATGTTCTTCATGTCTCAAATATTGTGGATGTATCAATTACATGTACTGTGATTTAGTATAGCTTGTATTCTAAATTTACATACAGCCATCTTTAGTTCAGTTTGCTGGTAGGTTGTTGACCTGGCATACAGTGTAGAATTCTGTGTGGGTGATTCTACAGCTACATTGTCTGCTGGGTTTTAGGCCCTACTCAAATAATCACTCACTTGTCACTTAATCTCACGGTAAGTATTTTCTCCCAATTCAGAGACCGTGTGACAATGATTGTGTATCATCAAATAAATACAAGTTCTAGAAGCAGAGTTGTGATTCCTGATGTGTTAAGGTCCGCTGGATTTGGATTGGGCCCTGTTTTGTCTAGAAAGAACATTTTACTGGGTTCCTTTGTTCACCGTGGCCTTGAAATGTACATCGTCTTAGAAGTTGAAACACTCCAATGCAAAACAATTCATTATTTCTGCAGACACACTGGTGAAAGCAATTACATCCATGGATTATTTGACAATTGTGTTTAATGACTCATCATAAAACATTCTTCAAAACAATAAGACAATTTTAAATGTCAGTTTCTGTACAACGCTTGCTTAGCAGTTTTATTTATATATAGAAAATGTACGAGGAGTTGTGTTAAAATGACAAAACTCCTTCAAATTTAATGGCAGGTACTCTGGAAAAAAATAACAGCATTCCATCAACAAATATTTTCAAGCAATAAATATGTATTTATAAATAGTGTAAATTTACATCAAGATTAGAAACATAACAAAAAtcacaaatcaaactttattccTTAAAGGAGAAGTTAGCTCTTTTTAAACAACCAAATCTGTATTTtgatgtaaatggcatgttatagtAGTCCACATTTTTATGCAATTTCACTTGTTTGAGAAACTTAACACAACCAGCGAATCATTTCCTCATCCTCGCTGTGCAGTATGGGGGCCCTGAAAAAACGTGATGCAGGTCTTTGAAATTGTGTCACTCCGCAATGCTATATTCCATTTTGTGCGTCTCAAGACGTTTCCCATATCCAGCTGTTTCATTCTCCGTGTAGACTGctgctacaggtaactgccaaaataaaggaaactccaacataaagtgtcttaatagggtgttgggacaacaagccagaacagcttcaatgcaccttggcatagattctacaagcgTCTGGAACTTCCTGTGTGGAAGCATCTCCGTTCAATATACTTTGTACCCCTCATTTACGCAAGTGTTTTGGCTGTGACCTGTAGAATGGACGGAGGTATCGCTTGAGTCGCAACAAAATGGAATATAACGTTGCGGATAAAGTTCAGAATGACGACGTCATCTGTACACAGTGTTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002469427.2 True 2321 mRNA 0.41 3 14643075 14662564

Neighbor

gene id symbol gene type direction distance location
LOC110495477 fundc1 coding downstream 55460 14580962 ~ 14587615 (-)
LOC110495480 LOC108249344 coding downstream 64987 14530581 ~ 14578088 (-)
LOC110495482 LOC106575623 coding downstream 135483 14506227 ~ 14507592 (-)
LOC110495488 LOC106575654 coding downstream 768513 13865384 ~ 13874562 (-)
LOC110495489 LOC106575650 coding downstream 809669 13803381 ~ 13833406 (-)
LOC110497004 LOC106575641 coding upstream 9602 14672166 ~ 14740105 (-)
LOC110495458 LOC106575627 coding upstream 89021 14751585 ~ 14752539 (-)
LOC110495456 LOC106575637 coding upstream 122288 14784852 ~ 14792946 (-)
LOC110495454 LOC106575630 coding upstream 152038 14814602 ~ 14830124 (-)
igfbp2 igfbp-2a coding upstream 524261 15186825 ~ 15203204 (-)
G1519996 NA non-coding downstream 77615 14565146 ~ 14565460 (-)
G1519987 NA non-coding downstream 106435 14536117 ~ 14536640 (-)
G1519575 NA non-coding downstream 115561 14526975 ~ 14527514 (-)
G1519574 NA non-coding downstream 117409 14525381 ~ 14525666 (-)
G1520063 NA non-coding upstream 36156 14698720 ~ 14699356 (-)
G1520128 NA non-coding upstream 147993 14810557 ~ 14811165 (-)
G1520132 NA non-coding upstream 156284 14818848 ~ 14820002 (-)
G1520149 NA non-coding upstream 244848 14907412 ~ 14907611 (-)
G1520153 NA non-coding upstream 249348 14911912 ~ 14921507 (-)
G1519529 LOC106575569 other downstream 156979 14484679 ~ 14486096 (-)
G1518991 NA other downstream 670786 13971081 ~ 13972538 (-)
G1518858 LOC106574768 other downstream 901508 13739451 ~ 13741567 (-)
G1520339 NA other upstream 613499 15276063 ~ 15277021 (-)
LOC110495442 LOC106574707 other upstream 836344 15434412 ~ 15500787 (-)
G1521308 NA other upstream 885312 15547876 ~ 15548483 (-)
LOC110495443 LOC106574666 other upstream 940273 15601688 ~ 15604709 (-)
G1521387 NA other upstream 1023337 15685901 ~ 15815957 (-)

Expression


Co-expression Network