LOC110497004 (LOC106575641)


Basic Information

Item Value
gene id LOC110497004
gene name LOC106575641
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 14672166 ~ 14740105 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951413.1
TGACTCCGTAACCAAAATCAAGTATGGCGGAATCTGTCAGAAAATGATTATTTCGCCAGTAGACTTCCCTAGCGATAAAGTCAACATATTTATTCTGCATCTTTCTCGGGACAGGGCCGCCTCTTGGAGCTTCTAGgctggtacaAGTGAGCGCGTGTCTCTGATTGGATTACCTGAATAGTAGGTTGTCTGTTGGAGGGCTGTTTCCTGTTGCTGACCAGTGAAGACATTTGTGGGTGATTGTGTTTCCTGCTGAGGAGTACTGTGGCCCTGATCTTGGTACACATCAGACCAGCCCccttccctacacacacacaaacacacacacacacactaacacccccCCGACCCACACACACTCCACCTGTCCCGTCCTACTCCTCTCCAGGCCGTATATTTGTACAACTTCACTGTGGATTCTCCAAGGACCATCCTGTCAACAATGACATCACACAGTCACCAAGaaGGACTCCTGGGCAAGGAGCAGCAGCTGGATGTCCTGAAGACGTCTGCCCTCAACCACATCCCCACAGtGGACATTAACTCTGCCCTGCCCCTGCGTCTGCCCCCGGCTGCCATCCCCATGGACTTACGCATTGACCAGCACCATCACCAGCAGCAGCTGTCCATGTCTCCTTCTGCAGCCCAGGCGTCTGCAGCCCAGGCCAGAGAGCAGCAGCTACAGCAGGAGCTCCTGTCCCTGAAACAGAAACAACAAATTCAGAGACAGCACCTCATCGCTGAGTTCCAGAGGCAACATGAGCAGCTCAACCGCCAGCATGAAGCCCAGCTACAGGAACATGTTAAGCACCAGCAGGAGCTCCTGGCCCTGAAACATCAGCAGGAGCTGTTGGAGCACCAGAGGAAGATGGAGAAGCACCGTCTGGAGCAGGAACTGGAGAAACACCAGAGAGAACAGAAACTACTGCTGCTGAAGAacaaggagagaggacaggagaGTGCAGTGGCCAGTACGGAGGTGAAGATGCGACTGCAGGAGTTTGTGCTGAACAAGAAGAAGGCTCTGGCCCAGAGGAGTCTCAACCACGGGGGGTTGCCCAACGACCCCCGCTACTGGTATGGgaaaACTCAGCACACTTCCCTGGACCAGAGCTCTCCTCCTCAGACTGGTATGGGTACCTACAACCACCCTGTCCTGGGCATCTACAACGCTAGAGACGACTTCCCCCTCCGCAAGACAgCTTCTGAGCCCAACCTGAAGCTACGTTCTCGTCTGAAGCAGAAGGTGAGCGAGCGTCGGAGCAGCCCCCTACTGAGGCGTAAAGACAGCCCGATCACAACCGCCAAGAAACGCTCACTGGATATGGCAGATTCAGCGTGTAACAGCGCTCCTGGATCCGGCCCCAGCTCTCCTAACAACAACAGCATCAGCAACATCCCCAATGAGAACGGCGTCTCTGTGGCAGTCTCCAACAGCATTGATGTGTCCCTGGCTCAACGGTTGTGTGGTGGTGAACTCAGCCAGCTGTCTCTGTACacgtccccctccctccccaacaTCACCCTAGGTCTGCCCGCCACGGCCACCTCTGCTTCCAATGTGACCTCAGCCCAGCAGGATGGGGGTCAACATTCGGCCCTCTCCCTCAGCCCCCCCTACCTAGGCGGTGCCCCCCTAGCCACCTACCTGGCTGACGGAGGGGGCGCAGGGGGGCACGGCCCACTACTGCAGCACTTGGTCCTGCTGGAACAGACTGGCGCGCACGGGCCCCTACTGGCAGGTGGGTACAGCAGTAGAATGGTACTTtggtggagaacacacacacacagtgtcccaGTACACTGTGTGGATGCCCTCCAGTCTCCCTCCATCCACATGCTGCGTGGGCAGCACCGTCCCCTGGGTCGGACCCAGTCGGCCCCACTGCCCCAGCAGAACGCCCAGGCCCAGGCCCTGCAGCAGCTGGTGGTCCAACAGCAACACCAACAGTTCCTGGAGAAACACAAACAGCAGTTCCAGCAGCTACATATCAACAAGATGATGGGCAAGCCCAGTGAGCCCACGGGGGCCCGGCAGCACCAGAGTCACCCGGAGGAGACCGAGGAAGAGCTGAGGGAGCACCAGGCCCTCACTCCGCAGGACGGAGGCTTTCCGTGTGGGTTCGCAATCAAACAAGAGCCCCCAGACCCCCAAGAGAACCAGGAGGAGGACATGCAGCAGGAACTGCTGTTCAGACAGCAGGCCATATTGTTGGAGCAGCAGAGAATCCACCAGCTGAGAAACTATCAGGCTTCCATGGAGGCAGCCGGTCTGTCAATCACCTTCCCAGGTCACCGCCCCCTCTCCAGGGCCCAATCGTCTCCGGCCTCCGCTTCCTCCTTCCCCATCTCTGTCCCGCCTCCTGAGCCTCCCACCAAACCTCGCTTCACCACAGGGTTGGTGTATGACTCTCTGATGCAAAAGCACCAGTGTATGtgcgggaacacacacacccatccgGAGCACGCCGGACGCGTCCAGAGCATCTGGTCCAGACTTCAGGAGACGGGACTTAGGGGACAGTGTGAGtgtatccgtGGTAGGAAGGCCACTCTGGAGGAGCTCCAGACAGTCCACTCTGAAGCCCACGTCCTGCTGTATGGAACCAACCCCCTCCGACAGAAACTAGACTGTTCAGTCACGCCCATGTTGGTCAGATTACCATGTGGAGGAGTGGGGGTGGACAGTGACACCATCTGGAACGAGGTCCATTCCTCTACTGCAGTTCGTCTGGCTGTGGGTTCTGTGGTGGAGCTGGTGTTCAAAGTGGCCACTGGTGAACTGAAGAACGGCTTTGCTGTGGTTCGACCCCCTGGACACCATGCAGAAGAGAGCACTCCCATGGGCTTCTGCTACTTTAACTCAGTAGCCATCGCAGCCCGGCTGCTCCAACAGAGACTCAACGTCTGCAAGATCCTCATAGTAGACTGGGATGTTCACCATGGCAACGGGACCCAGCAGGCATTTTACGACGACCCCAGCGTGCTGTACCTGTCTCTCCATCGATACGACGATGGAAACTTCTTCCCTGGCAGCGGAGCCCCCGACGAGGTGGGCAGTGGTCCAGGAGTAGGTTTTAACGTTAACATGGCCTTCACCGGGGGGCTGGAGCCACCTATGGGAGATGCAGAGTACCTGGCAGCCTTCAGgtcTGTGGTGATGCCCATAGCAGATGAATTTGCTCCTGACGTGGTGCTGGTGTCCTCAGGCTTCGACGCCGTCGAGGGTCACCCTCCTCCCCTAGGCGGTTACACCCTCACCTCCAAATGTTTTGGGTACCTGACACGTCAGCTGATGACCCTGGCTGAGGGTCGCGTGGTGCTGGCATTGGAGGGAGGTCACGACCTCATGGCCATCTGTGACGCTTCCGAGGCCTGCGTCTCCGCTCTGCTGGGCAACcagCTGGATCCTCTCCCTCAGACGCTTCTGGAGCAGAGACCCAACCAGAATGCTGTGTGCTCCATAGAGAAGGTTATAGAAACACACAgTAAGTACTGGCGCTCCATGCAGCGTGGCTCCCCCAGGCTGGGCCTGTCTGTGCTGGAGGCTCAGAGAGGAGACTCGGAGGAGGCTGAGACCGTCAGCGccatggcctctctctctgtggccaacAAACAGAGCAGGTCGGAGGAGGAACCCATGGAGGAGGAAGCACCATTATAGTGGGGGAAGCATAAGGGCGTCGCACCGTGACTGTCGGCCTCTGCAGCTCGGAAGACTACCTTCTGGAGAGTCTCGACTGTCCTTTTCATTTAGTCCCTCCGCGCCGTGCCTATCACCTTGATTGGCAGCTCCTCTgccaatgagagagagggatgggcttCAGAGTAGGGAGTCAATGGGGATACGATATGAAGGACGGAAGTGACAAAGCGCTGCAGCCAGGCAGCTCAGCGTGGTCAGCTCACCGTTTGTTTCTGCCAGTCAGACTGAGGCAGCCCCAGAAGACACCCTAGCACCGAGGCAGGGCGTGGGTTCTCGGAGTGGAGGCGGATAATGGAAGTCTTACTCCTGAAGGGAAAGATCTGGTGCTTTACAGAGCTCCCCCGTGGCCAAATATGGAGACAGATGACAGGACAAGTCCGGCTGTCACACACAGCGTGGACATTTATTTTCTCTCCTGCTTTTGTCCCGCTAAATGGAGGACATGCTACTGATGGAGATGGTGGTTACTGATGAGAGATGGCGGACAACAAAGCCCCTAGGAGAATTGTCGGGCTGTCATTGGCTGAGGACAGTAGACTTGACTGTGGTTGGCCGTTGAGCAAGCGTTGGCCGTTATTGGATGATGAGGCTATTGGATCTTTGCCTTACTGATGCAGCTGGTAGTTCTGTGATGGAGGATCCACCAATGAGAGAGTGCCTTTGTGAAGCTCTGATGGATTTCAGGATTGTGTCAGAAATGAAGATTGCCTTAAATGATGATCctgaccaggggagagagagaaatacattttccTGTTTGACAGAGGACGGGATGGTGGAAAAAATGATCTTTCAGCATGTTTACCAGGATTGTGATGTAGACAGCGTTTGTCTCTCACAGCCTCTTTTAGAGGTCATTATACCTTTGGATTGATATATTTTTCTGTAAAAATGCTTCAAAAAGGTAGTTGCAAGCAAACATTTGAAACGTTCAACTTCCAGTTGATTCGTAAAGCACTGTTGAAGGTTAGCATTTAGCCTTATGTAGCTTCCCTTTATCACATAACCAATCGCTAACGGAGAAAAAGCATGTCTCACCAGAAAGACCTGTCGGTTGCAAGGTTAGAAAGTTATCCAAAAAGAACTAGTCGAGCAAAAAAAAAGCCAAAGCATGAGTTTGCATCCAGCTCTTTCGTACCACTAGTAACAGCAGGCATACACAGTATTACTACTGGCTTTTCATACCAAGCACACTGTTCGAGAGCTAACGGATCAAACATGTATGTCTCAACCTTTTTGGTTAAATAATTATTGAATTCCAATGTATTGTTTGGCAACTACCTTAGTTAATAGTTACTATAAACATCTTGTCATGTATATTGAATTGAACATATTGTAAAGTGTGTTAATTTGCCATCTTTGAAACTATCATTTCCACATCGAGCTAGTCAATTGACTATACCATCATCAACTTTTTCTTAATCAACCATCTCAAGTGGGTGACAATTCTATTTTTGGCATGTATGAAAATCTCTAGTTTTGAACATACTTTTTATATTTGCATATTTGTCATTTTGCGTTGTTACTCTGTACAGTTGATGTGCCACTTGCTCTTAGTGTCCTCATCATGCATTGGGATGATCAGCCTTTCTACTTTATACCATGATTCCAGAAATGGTCTATTTACTTACAGAATGATCCTGTTTACAGAGAGGTTCTACATGGAAAGCCTAGAAATATATTATATCCGTAGCCTACATGAGAGCTATGACGTTGTGAAAGAGAATAGCTATGGCAAAGATGGTCTCACTCCAGTAAATAGCTCTAAAAACCTTATGTGGGGAGTTGAGGTTGACTGTTTTAAACTGTCCCTGGTTGGAGCAGCCCTGCACTCAGCAGCAGTGGATTTGGTCTCTGTTCCACACATCACTCTGAACACAAAAAGGGGAGCACACTGGTTTGTTTTTGTACTGTATTGTTCCTGGCTGCACTGTAGCTTGACTAGACTAGACTAGCATGGGGCATTTTAAAGACACTTCGCTTTCGCGTTTGACTTCATTGGGACCAACCAAAATGACATACCGAGGTTACTTTTGACACCATAACACACTGTTGTTGATTTGATAGCATGGTTACTGCTGTCCTGCCATGGTTACTGCTGTGTTGCCATGGTTACTGTACATTAGCATACCTCAACTTCAGAAAATGTTGTGACATCACTTCTTCCTGTCGTAGCTACATTAGTCGGGTTGTCAAGAAACCGGAGTCATGATATTAGTGGGTTGGCATGGTCTCATTGTAGTTCAAACTATTCTCATCCCTAGTAAATAACTCCTTTTAGTTTTCAATAATGTTCTTACACTAATTTTGGCAGTATCATGTTTCCTTTTCATGATTTAGTAAACATTGTATTTATTGTTGCTTTGCTTTGTGTTTGCTCTCAGATTCACCATTCCTATGAATAGTTTCAGAGCCCCAGGGTTTGGTATGTTCCTTTACAAAACATTTCTTTAACGCCATCTAATTCTCTGCATGGTTTGTCTGTCCGCATGCCTGTCTGGCTGTACGTCTGTGTAACACTGTATTTGCACAGTAGAAGAAAACTGGAGGACTAAATCCTATCCCAGAAAACCCAGCGTGAATGTCTCTTCTTCTTTGGTGTACTAAGGATACAAAGGACTTGTCCAAATGAATTCCACattagattttaaaaaataattaaatgcTCAGTTTTTGTAGGGAAATTACCCAGCACTTAAACAAGATAATGGACAATAGACTTGACTGTGTTTAGAGTAAGAGGAATATGGATTAGCTAGGCTAATCTCAGAGTGTATTTATGCTGGCTTCACATGCTCATGGGAAATGGGGAAGTGGAACAATTAAGTCCGACATGATTGTGTTTAAGTGCTTTTGAAGTCGGAAAAATTCTTCAACCAATAGGATTTTAGCTAGCTTATCAAGGTTGCTAATaataaagttagctagcttaTCAAGGTTGCTAATaataaagttagctagcttaTTAAGGTTGCTAATaataaagttagctagcttaTCAAGGTTGCTAATaataaagttagctagcttaTCAAGGTTGCTAATAATAAAGTTAGCTAGATTGCTTAACATTGACAATATGATGAGGTCGTAGTTGTCAAACTGATTTGTTATTTTTGGTtgaaaaggtcaaaggtcagtgGTGAAACATCATAACTCGCCTACCTGGGCAACAACATTTTCAGAGTTTCCCACTTGAAATTCCGACTTGGAGGTTCGCTCAAGTGAAACTTCTCAGTTGGAAATAGGAACTTCTGATACCACATGAATGTGGCATTACACCCATCTAGACTGCTTGTCTCACCCTAAGAGTGTTTCTAGGGTGTTGGGAACAGACACAAAAAGTAGAAAATGGCTAAAACATCGGACCTTTAAAACACTCCATATGTGGTTGATTGGGAAGGGAATTTTCTGCAGACTCTTATCCACTTAAGCCAGTTGTATTTAAAACCACTGTGGTTAAAAAGAGCTATTCTCGGTTTACatatgtaaatgttatttttgttttctttCCATTCCATTGTTACAAATGATATCTTGTTGGGACCTATATGCTTTTGACATTTTGTCTCAGACATAAACTCTAAAATatatttctgaaaaatgaa

Function

NR:

description
PREDICTED: histone deacetylase 4-like isoform X1

GO: NA

KEGG:

id description
K11406 HDAC4_5; histone deacetylase 4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951413.1 True 7314 mRNA 0.49 24 14672166 14740105

Neighbor

gene id symbol gene type direction distance location
LOC110495478 NA coding downstream 9602 14643075 ~ 14662564 (-)
LOC110495477 fundc1 coding downstream 84551 14580962 ~ 14587615 (-)
LOC110495480 LOC108249344 coding downstream 94078 14530581 ~ 14578088 (-)
LOC110495482 LOC106575623 coding downstream 164574 14506227 ~ 14507592 (-)
LOC110495488 LOC106575654 coding downstream 797604 13865384 ~ 13874562 (-)
LOC110495458 LOC106575627 coding upstream 11480 14751585 ~ 14752539 (-)
LOC110495456 LOC106575637 coding upstream 44747 14784852 ~ 14792946 (-)
LOC110495454 LOC106575630 coding upstream 74497 14814602 ~ 14830124 (-)
igfbp2 igfbp-2a coding upstream 446720 15186825 ~ 15203204 (-)
inh inh coding upstream 526545 15266650 ~ 15268117 (-)
G1519996 NA non-coding downstream 106706 14565146 ~ 14565460 (-)
G1519987 NA non-coding downstream 135526 14536117 ~ 14536640 (-)
G1519575 NA non-coding downstream 144652 14526975 ~ 14527514 (-)
G1519574 NA non-coding downstream 146500 14525381 ~ 14525666 (-)
G1520128 NA non-coding upstream 70452 14810557 ~ 14811165 (-)
G1520132 NA non-coding upstream 78743 14818848 ~ 14820002 (-)
G1520149 NA non-coding upstream 167307 14907412 ~ 14907611 (-)
G1520153 NA non-coding upstream 171807 14911912 ~ 14921507 (-)
G1520159 NA non-coding upstream 191612 14931717 ~ 14931957 (-)
G1519529 LOC106575569 other downstream 186070 14484679 ~ 14486096 (-)
G1518991 NA other downstream 699877 13971081 ~ 13972538 (-)
G1518858 LOC106574768 other downstream 930599 13739451 ~ 13741567 (-)
G1520339 NA other upstream 535958 15276063 ~ 15277021 (-)
LOC110495442 LOC106574707 other upstream 758803 15434412 ~ 15500787 (-)
G1521308 NA other upstream 807771 15547876 ~ 15548483 (-)
LOC110495443 LOC106574666 other upstream 862732 15601688 ~ 15604709 (-)
G1521387 NA other upstream 945796 15685901 ~ 15815957 (-)

Expression


Co-expression Network