LOC110495458 (LOC106575627)


Basic Information

Item Value
gene id LOC110495458
gene name LOC106575627
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 14751585 ~ 14752539 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570732.2
GCCCCATGTGAATTTCCTCTAATCGGCTATCCAATCAGACATAAGTATTTACGACATGTGACTTTGGGAAAACTTGTTATTCCCTTCATAAAAAAGGCTCTATGGCTGCTGTTATTTCCAGTTTAGGCTTCTTCTAGTTTTTGCAAACAGCCTGTCGCCATGTCCGGTCGTGGAAAGAAAGCTGTCTCCAAATCGAAGACTTACACAAGTCGCACTGTCAGGGCAGGTCTCCAGTTTCCTGTAGGCCGAATTCACCGTCTGCTGAAGAAGGGACATTACGCTGCCCGCATTGGTACAGGAGCTGCAGTCTACCTCGCTGCCATACTGGAGTATCTCTGCGCTGAAGTCCTGGAGCTCTCGGGCAACGCGGCCCGTGACAATAAGAAGTCGCGCATTGCTCCACGGCACATCCAACTAGCTGTACGGAACGATGAGGAGCTGAACACGCTGCTGTGTGCGGTCACCATATCGGAGGGTGGTGTCCTTCCAAACATCCAAGCCGTGTTACTCCCCAAGAAGAGCAAGCAACCGAAAGACAACGGCAGCAATGCCAAAGACGTCCAGTCTCAAGAGTTTTAAAATGTACCTTACAAGCTTTTACCGCAAATTCGTCTCTTTCACTGTTTTCCTTAATAAAATAACAGTTTTAAAGTGTC

Function

NR:

description
late histone H2A.2.2-like

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K11251 H2A; histone H2A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570732.2 True 656 mRNA 0.48 2 14751585 14752539

Neighbor

gene id symbol gene type direction distance location
LOC110497004 LOC106575641 coding downstream 11480 14672166 ~ 14740105 (-)
LOC110495478 NA coding downstream 89021 14643075 ~ 14662564 (-)
LOC110495477 fundc1 coding downstream 163970 14580962 ~ 14587615 (-)
LOC110495480 LOC108249344 coding downstream 173497 14530581 ~ 14578088 (-)
LOC110495482 LOC106575623 coding downstream 243993 14506227 ~ 14507592 (-)
LOC110495456 LOC106575637 coding upstream 32313 14784852 ~ 14792946 (-)
LOC110495454 LOC106575630 coding upstream 62063 14814602 ~ 14830124 (-)
igfbp2 igfbp-2a coding upstream 434286 15186825 ~ 15203204 (-)
inh inh coding upstream 514111 15266650 ~ 15268117 (-)
LOC110495436 LOC106574694 coding upstream 593441 15345980 ~ 15406547 (-)
G1520063 NA non-coding downstream 52229 14698720 ~ 14699356 (-)
G1519996 NA non-coding downstream 186125 14565146 ~ 14565460 (-)
G1519987 NA non-coding downstream 214945 14536117 ~ 14536640 (-)
G1519575 NA non-coding downstream 224071 14526975 ~ 14527514 (-)
G1520128 NA non-coding upstream 58018 14810557 ~ 14811165 (-)
G1520132 NA non-coding upstream 66309 14818848 ~ 14820002 (-)
G1520149 NA non-coding upstream 154873 14907412 ~ 14907611 (-)
G1520153 NA non-coding upstream 159373 14911912 ~ 14921507 (-)
G1520159 NA non-coding upstream 179178 14931717 ~ 14931957 (-)
G1519529 LOC106575569 other downstream 265489 14484679 ~ 14486096 (-)
G1518991 NA other downstream 779296 13971081 ~ 13972538 (-)
G1518858 LOC106574768 other downstream 1010018 13739451 ~ 13741567 (-)
G1520339 NA other upstream 523524 15276063 ~ 15277021 (-)
LOC110495442 LOC106574707 other upstream 746369 15434412 ~ 15500787 (-)
G1521308 NA other upstream 795337 15547876 ~ 15548483 (-)
LOC110495443 LOC106574666 other upstream 850298 15601688 ~ 15604709 (-)
G1521387 NA other upstream 933362 15685901 ~ 15815957 (-)

Expression


Co-expression Network