LOC110495456 (LOC106575637)


Basic Information

Item Value
gene id LOC110495456
gene name LOC106575637
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 14784852 ~ 14792946 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951917.1
AGAGGTGCCTTTCCCTAAACTCGTGAGTGTGATACTTGAGACTCCTTCTCTCTGTCATTCTGACAAGAACACAAAGACAAGATGTCCAAACCAGGCGGATACAGCAGCCAGTCCGACACTCCCTCGGGTAACAAGCCCAAAAGCTACCCGAACGTCGCCACTAACAAGGACCTTCTAGAGCCCAACAACCCCAAGGTGGACCCGAAGGACCAGTCAGCCAAGAGCCAGGAGAAGGACCAGATGGTTGGACTCAACGACAAGTTTATAGCGTTCATTGACAAGgTGCAAAACCTGGAGCAGCAGAACAAGGTCCTGGACACGCGTCTGAAGATCCTGAAGGAGCAGGAGGACTACCAAGGCAACGTGGACGCTGTGGTCCAACAGCTGGCCAACGAGTTGCAGCAGCAGATCCAGAAACTGGCCCGGGACAAACAGAAACTGAAGCAGGAGCTGGCCCGCTGCCAGGACGAAGTGGACCAGACACGCAACAAGTACCAGGATGAGATCCAGAAGAAGTCGGATCTGGAGAATGACTTTGTGATCAACAAGAAGGATGTGGATAAGGGCCACCTGGCAGCCGTGGATCTGGCTCTGGAACTGGAGGACCTGATGGGAGAACTGGACTTCCTGAGGCGGGGCTATGAGGAGgagctgaaggagctggAGTCTCATATTCAGAATGAGACGGTGGTCGTGAAGGAGAGCAACATGAGATCTCTAGACATGGACGAGATCATCGACAGCGTCAAGAAACAGTACGCGGACATGGCCTCCCGTgccagagaggaggcagagctgtGGAACCAGAAAAAGatGGATGACATAGTGCTGACAGCAGAGCAGTATGAGCAGGATGTACGCAATGTGAAGAAGGAGATTGCTGACATGCTTCGTCTAATACAGAGACTGAAGGCAGAGCTGGAGACCCTCAAGAAGCAGAAAATAGTTGTTGAGAAGGACATTGAGGATGTGGAGGTGGATGAGCAGAATGCGTTGGAGCAGGCCAGGGATAATATTGTTGCGCTGGAAGACGCTCTCCGCAGGGCCAAGCAGGACATGGCCCGTCAGGTCAGGGAGTACCAGGAACTGATGAACCTCAAACTGGCCCTGGACATCGAGATCGCCACCTACAGGAAGCtactggagggagaggagattagAATGAATGACCATATACGTCATCAAGACATTGATTTGCCTTCGAAGCCCCTCCTGACTCTGAAGCCCCTCCCATTAGATGCCGGTGGCCCCCCAACCAGCCCCAGGAAGCGTCTGCTGATCAGAATTGAGGTGGAGGCGGGAAGGGTCATGTCCAAGAGCTTACACTACTCCGACAATTAACCAAGCCCACCGTCACTCTGCTGTCGCTATAGTAACACGGTGACgttcctctttctctgtctcttttccatCTAAAAAACCTTGCTGAGTCTTTTGTTTTACGTTAAGGTCATTGTTTAATAAGCTACGGTGTTAAACTTACAAACTTTGTTTTCAACTGCAGTTCGAAGACCATGTGCAACAGTAACAGGAGCTCTTACAAAATGTGTCCTGTGCTCTTTTTCATTAAGTTTGTGCTCTCTTGTGCTCGTGTGACTGGGAAGGCCATGTCCTCCAATGCTTGAATGTCACTGAACCAGGTCCAAAATAAAGAGAAAATATTAA
>XM_036951918.1
AGAGGTGCCTTTCCCTAAACTCGTGAGTGTGATACTTGAGACTCCTTCTCTCTGTCATTCTGACAAGAACACAAAGACAAGATGTCCAAACCAGGCGGATACAGCAGCCAGTCCGACACTCCCTCGGGTAACAAGCCCAAAAGCTACCCGAACGTCGCCACTAACAAGGACCTTCTAGAGCCCAACAACCCCAAGGTGGACCCGAAGGACCAGTCAGCCAAGAGCCAGGAGAAGGACCAGATGGTTGGACTCAACGACAAGTTTATAGCGTTCATTGACAAGgTGCAAAACCTGGAGCAGCAGAACAAGGTCCTGGACACGCGTCTGAAGATCCTGAAGGAGCAGGAGGACTACCAAGGCAACGTGGACGCTGTGGTCCAACAGCTGGCCAACGAGTTGCAGCAGCAGATCCAGAAACTGGCCCGGGACAAACAGAAACTGAAGCAGGAGCTGGCCCGCTGCCAGGACGAAGTGGACCAGACACGCAACAAGTACCAGGATGAGATCCAGAAGAAGTCGGATCTGGAGAATGACTTTGTGATCAACAAGAAGGATGTGGATAAGGGCCACCTGGCAGCCGTGGATCTGGCTCTGGAACTGGAGGACCTGATGGGAGAACTGGACTTCCTGAGGCGGGGCTATGAGGAGgagctgaaggagctggAGTCTCATATTCAGAATGAGACGGTGGTCGTGAAGGAGAGCAACATGAGATCTCTAGACATGGACGAGATCATCGACAGCGTCAAGAAACAGTACGCGGACATGGCCTCCCGTgccagagaggaggcagagctgtGGAACCAGAAAAAGatGGATGACATAGTGCTGACAGCAGAGCAGTATGAGCAGGATGTACGCAATGTGAAGAAGGAGATTGCTGACATGCTTCGTCTAATACAGAGACTGAAGGCAGAGCTGGAGACCCTCAAGAAGCAGAAAATAGTTGTTGAGAAGGACATTGAGGATGTGGAGGTGGATGAGCAGAATGCGTTGGAGCAGGCCAGGGATAATATTGTTGCGCTGGAAGACGCTCTCCGCAGGGCCAAGCAGGACATGGCCCGTCAGGTCAGGGAGTACCAGGAACTGATGAACCTCAAACTGGCCCTGGACATCGAGATCGCCACCTACAGGAAGCtactggagggagaggagattagAATGAATGACCATATACGTCATCAAGATTACTAAAACAAACCGACCAATCCCAGTTCTTGCTTACACGCAGACATTGATTTGCCTTCGAAGCCCCTCCTGACTCTGAAGCCCCTCCCATTAGATGCCGGTGGCCCCCCAACCAGCCCCAGGAAGCGTCTGCTGATCAGAATTGAGGTGGAGGCGGGAAGGGTCATGTCCAAGAGCTTACACTACTCCGACAATTAACCAAGCCCACCGTCACTCTGCTGTCGCTATAGTAACACGGTGACgttcctctttctctgtctcttttccatCTAAAAAACCTTGCTGAGTCTTTTGTTTTACGTTAAGGTCATTGTTTAATAAGCTACGGTGTTAAACTTACAAACTTTGTTTTCAACTGCAGTTCGAAGACCATGTGCAACAGTAACAGGAGCTCTTACAAAATGTGTCCTGTGCTCTTTTTCATTAAGTTTGTGCTCTCTTGTGCTCGTGTGACTGGGAAGGCCATGTCCTCCAATGCTTGAATGTCACTGAACCAGGTCCAAAAT

Function

NR:

description
intermediate filament protein ON3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951917.1 False 1665 mRNA 0.51 8 14784852 14792946
XM_036951918.1 True 1694 mRNA 0.51 8 14784868 14792946

Neighbor

gene id symbol gene type direction distance location
LOC110495458 LOC106575627 coding downstream 32313 14751585 ~ 14752539 (-)
LOC110497004 LOC106575641 coding downstream 44747 14672166 ~ 14740105 (-)
LOC110495478 NA coding downstream 122288 14643075 ~ 14662564 (-)
LOC110495477 fundc1 coding downstream 197237 14580962 ~ 14587615 (-)
LOC110495480 LOC108249344 coding downstream 206764 14530581 ~ 14578088 (-)
LOC110495454 LOC106575630 coding upstream 21656 14814602 ~ 14830124 (-)
igfbp2 igfbp-2a coding upstream 393879 15186825 ~ 15203204 (-)
inh inh coding upstream 473704 15266650 ~ 15268117 (-)
LOC110495436 LOC106574694 coding upstream 553034 15345980 ~ 15406547 (-)
LOC110495442 LOC106574707 coding upstream 700623 15434412 ~ 15500787 (-)
G1520063 NA non-coding downstream 85496 14698720 ~ 14699356 (-)
G1519996 NA non-coding downstream 219392 14565146 ~ 14565460 (-)
G1519987 NA non-coding downstream 248212 14536117 ~ 14536640 (-)
G1519575 NA non-coding downstream 257338 14526975 ~ 14527514 (-)
G1520128 NA non-coding upstream 17611 14810557 ~ 14811165 (-)
G1520132 NA non-coding upstream 25902 14818848 ~ 14820002 (-)
G1520149 NA non-coding upstream 114466 14907412 ~ 14907611 (-)
G1520153 NA non-coding upstream 118966 14911912 ~ 14921507 (-)
G1520159 NA non-coding upstream 138771 14931717 ~ 14931957 (-)
LOC110495482 LOC106575623 other downstream 277534 14506227 ~ 14507592 (-)
G1519529 LOC106575569 other downstream 298756 14484679 ~ 14486096 (-)
G1518991 NA other downstream 812563 13971081 ~ 13972538 (-)
G1518858 LOC106574768 other downstream 1043285 13739451 ~ 13741567 (-)
G1520339 NA other upstream 483117 15276063 ~ 15277021 (-)
G1521308 NA other upstream 754930 15547876 ~ 15548483 (-)
LOC110495443 LOC106574666 other upstream 809891 15601688 ~ 15604709 (-)
G1521387 NA other upstream 892955 15685901 ~ 15815957 (-)

Expression


Co-expression Network