LOC110495443 (LOC106574666)


Basic Information

Item Value
gene id LOC110495443
gene name LOC106574666
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15601688 ~ 15604709 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570684.2
ATGATGGAGGCTACGTCACGTCAACGTACTGAGCGTCACTTCTGATAAACCAAGGAAAGGCTCCCGAGGAAAAACTGTTACATTATAGCAGATATTTGCTATTTCATCAAATTAAACGAACAACAATCAGGCATAATCTATATTGTCACGGAAATATGGAATGTGTGTTTCATTGGCTTTTTGAGAATTGATAGTGAGCTCCAGTCAATGGATGCCGTGGTGGAGGTTAAGGAGTCAGAGACAGCCATGGCGGGTTTTAAGGAGTCAACGGAAGCCACAATGGACGTTAAGAAGTCAATTTCAGCCGTCATGCACGTTAAGGAGTCCATGCCAGTCATAATTGAAGTTAATGAGTCAGAGTCAAAAGAAGCCGTTGTGGACATTAAGGAGTCACAGGGAGCTGTTATGGAACTCAAGAGGCAGTCTTCCTCCTCTGGCGGCCAGGGGCGGGACAGAGACCGGGAGTCGGACAGCTATCTCCAGCACCTCCAGTGTCCCCACTGTCTGCTCCAGTGTAAGAGCCACTGCAGCTACCTCATCCACATCGCTAAGATCCATCCAAGCCGCCTGGATGACACGCCTGTGGGTCGCCTGGGCAACGCCATCTTCTACCAGCGCACGGCACGGCTGTTCCACTGCAGCTTGTGTTTCCACACGGCCAGGGAGTTTCCTCGCCTCTACGACCACCTGCTCACCTGCCACTGCCTCTCTGGGAAGGGCCAGGgtgaggagggagaaggggatgagcgtaggggggaggggggagaagaacAGGAAGGTATCAGTGTAGACGTGCTGTCAAAAGACAGTAGTCATCCTCTCAGTGAGCCCAAggcagaagaggaggatgaggacaaAGGAGGAGTGAAGCAAGAGGAGGAAGGTAGGAaaagaggactagaggagatggagggaggcgaGGACAATGAAGAGGACTCCCGCTCAGCCGGCAGCCCCATGAAACGAAAAAGAAGCTCTACGGCAGGCAGTGAGGAAGATGATcatgatgaagaggaagaggagctacagaccaacaacaacaaaaaaagtgacAAACACAAAAAGCAGGAAGAGGCCTTCCTGACCAAATATATCCAGCGCCAGGGGGGTCGCTACAACTGTCGCCTGTGCGGCAAGCGCTCCAAGATGAAGGGCCATGCCATCTACCACGTGAGCTACAAGCACGACGTGCCCAAACCTTACTGCTGTAAAGAGTGTAGCAAGGCCTTCATACTAGAGTATTCGCTACTCAACCATATCTACCACAACCACAGACAGGGCATGTACCGCTGCCTCTTCTGCCCCTTCAGCTCTGACGTGGTGTGGGGCATAAAACGTCATGGCAACCGCTGCAATGCCCGAagcggggagggggaggagggggagggcagCAATGGAGAAGAGTGATTGGTTAATGGTTGCTAACACATACTGTACCTTCGTAATCAGGAGAAGGGACTCCAGGCCTACATTATCTAAGTTCTAGAATCTCTTTGCATTGTGCATCTACTAGGCTAGTAACCCTAGGTACAGTAGATTCCACTGTCACAGAGGTGTAGATTCTCAGTGAAGTATGTATTTACTTCCTCTGTACACACAGTGATGAAGAATGAGGTACTTTGTCATTCTGTAGACTTTTCCTGATATACTGGAGCTGATGGACTCAAATATAGAATATGTACTTTGTGAACTCGAAAAACAGCGTTAATATGTACATGACAGCTGTTGATGACTCATAATGCTACACAATGAAactaaaaacacgttttttttgtgtgttttttaccTGCCTTTGTATTGTCTTTATTACATGGGATGTGTTCGTCTCTTTGAAAACAATACAATAAAAAGAATACATCAATTTTAGGTA
>XM_021570685.2
aagtgcgaaacgctctgaatttacgagcgaactctggcactccagatggAATTTAAGAACGCACCCAAATTCGTAAAATGTCTAACTAGTAATTTGTtaaggttgcatagcaacagcatcaacttctggTAGACATGCGAAGAACTTGTACACTCAACAGGAAGCAATGGGAAGACCTCAGAGTTCCATGATAGCCTGAGCAGAACCGAAACTTCTTCTTCTTAGCCAAAAGGACGAGAAGGATACTGTTCgtttacagtatgctaaaatgaactaatagtatatactcattaagtatgtagtacacagtatgttagtatgggtttTCGAACACAGCTTTAGTGCTTGCCTCAGTTTACTCTATTTAACACGCCGACAAGGTGCATTGTCCTGGGCTGCAAACCACCAGTTTCCACTCTTTTCCAAAAGACTACATCGTATTCCGAAAATTGGTGGGATTCGCCTCCTTACACGAGAATGGCGTGTTGAACGGCACTCAGATACGCGAGGCTCATTTCAGCAAAGAATGTTTTCGACTCCATACACCGAGAAAGTGATTGTTGTGGGATGACGCGGTTCCCACGATTTGTCCCAGCGATAGCCCGAGCAGAACCGATACTTCTTCACCATATGTTAGCCAAAATGACGAGAAGAAGCAACACAGACCGATCCAAGAAGTTCAGGATAGACCACGCGTGGATTATTCTGTTATCCAGAACAGCAGGGAGCCGAAACGTGAGCTCCAGTCAATGGATGCCGTGGTGGAGGTTAAGGAGTCAGAGACAGCCATGGCGGGTTTTAAGGAGTCAACGGAAGCCACAATGGACGTTAAGAAGTCAATTTCAGCCGTCATGCACGTTAAGGAGTCCATGCCAGTCATAATTGAAGTTAATGAGTCAGAGTCAAAAGAAGCCGTTGTGGACATTAAGGAGTCACAGGGAGCTGTTATGGAACTCAAGAGGCAGTCTTCCTCCTCTGGCGGCCAGGGGCGGGACAGAGACCGGGAGTCGGACAGCTATCTCCAGCACCTCCAGTGTCCCCACTGTCTGCTCCAGTGTAAGAGCCACTGCAGCTACCTCATCCACATCGCTAAGATCCATCCAAGCCGCCTGGATGACACGCCTGTGGGTCGCCTGGGCAACGCCATCTTCTACCAGCGCACGGCACGGCTGTTCCACTGCAGCTTGTGTTTCCACACGGCCAGGGAGTTTCCTCGCCTCTACGACCACCTGCTCACCTGCCACTGCCTCTCTGGGAAGGGCCAGGgtgaggagggagaaggggatgagcgtaggggggaggggggagaagaacAGGAAGGTATCAGTGTAGACGTGCTGTCAAAAGACAGTAGTCATCCTCTCAGTGAGCCCAAggcagaagaggaggatgaggacaaAGGAGGAGTGAAGCAAGAGGAGGAAGGTAGGAaaagaggactagaggagatggagggaggcgaGGACAATGAAGAGGACTCCCGCTCAGCCGGCAGCCCCATGAAACGAAAAAGAAGCTCTACGGCAGGCAGTGAGGAAGATGATcatgatgaagaggaagaggagctacagaccaacaacaacaaaaaaagtgacAAACACAAAAAGCAGGAAGAGGCCTTCCTGACCAAATATATCCAGCGCCAGGGGGGTCGCTACAACTGTCGCCTGTGCGGCAAGCGCTCCAAGATGAAGGGCCATGCCATCTACCACGTGAGCTACAAGCACGACGTGCCCAAACCTTACTGCTGTAAAGAGTGTAGCAAGGCCTTCATACTAGAGTATTCGCTACTCAACCATATCTACCACAACCACAGACAGGGCATGTACCGCTGCCTCTTCTGCCCCTTCAGCTCTGACGTGGTGTGGGGCATAAAACGTCATGGCAACCGCTGCAATGCCCGAagcggggagggggaggagggggagggcagCAATGGAGAAGAGTGATTGGTTAATGGTTGCTAACACATACTGTACCTTCGTAATCAGGAGAAGGGACTCCAGGCCTACATTATCTAAGTTCTAGAATCTCTTTGCATTGTGCATCTACTAGGCTAGTAACCCTAGGTACAGTAGATTCCACTGTCACAGAGGTGTAGATTCTCAGTGAAGTATGTATTTACTTCCTCTGTACACACAGTGATGAAGAATGAGGTACTTTGTCATTCTGTAGACTTTTCCTGATATACTGGAGCTGATGGACTCAAATATAGAATATGTACTTTGTGAACTCGAAAAACAGCGTTAATATGTACATGACAGCTGTTGATGACTCATAATGCTACACAATGAAactaaaaacacgttttttttgtgtgttttttaccTGCCTTTGTATTGTCTTTATTACATGGGATGTGTTCGTCTCTTTGAAAACAATACAATAAAAAGAATACATCAATTTTAGGTA
>TU1741790
GGAAAGGCTCCCGAGGAAAAACTGTTACATTATAGCAGATATTTGCTATTTCATCAAATTAAACGAACAACAATCAGGCATAATCTATATTGTCACGGAAATATGGAATGTGTGTTTCATTGGCTTTTTGAGAATTGATAGTGAGCTCCAGTCAATGGATGCCGTGGTGGAGGTTAAGGAGTCAGAGACAGCCATGGCGGGTTTTAAGGAGTCAACGGAAGCCACAATGGACGTTAAGAAGTCAATTTCAGCCGTCATGCACGTTAAGGAGTCCATGCCAGTCATAATTGAAGTTAATGAGTCAGAGTCAAAAGAAGCCGTTGTGGACATTAAGGAGTCACAGGGAGCTGTTATGGAACTCAAGAGGCAGTCTTCCTCCTCTGGCGGCCAGGGGCGGGACAGAGACCGGGAGTCGGACAGCTATCTCCAGCACCTCCAGTGTCCCCACTGTCTGCTCCAGTGTAAGAGCCACTGCAGCTACCTCATCCACATCGCTAAGATCCATCCAAGCCGCCTGGATGACACGCCTGTGGGTCGCCTGGGCAACGCCATCTTCTACCAGCGCACGGCACGGCTGTTCCACTGCAGCTTGTGTTTCCACACGGCCAGGGAGTTTCCTCGCCTCTACGACCACCTGCTCACCTGCCACTGCCTCTCTGGGAAGGGCC

Function

NR:

description
chromosome alignment-maintaining phosphoprotein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570684.2 False 1870 mRNA 0.49 2 15601688 15603958
XM_021570685.2 False 2412 mRNA 0.48 2 15601688 15604709
TU1741790 True 668 TUCP 0.51 2 15602837 15603905

Neighbor

gene id symbol gene type direction distance location
LOC110495447 LOC106575526 coding downstream 813 15595085 ~ 15600875 (-)
LOC110495442 LOC106574707 coding downstream 100901 15434412 ~ 15500787 (-)
LOC110495436 LOC106574694 coding downstream 195141 15345980 ~ 15406547 (-)
inh inh coding downstream 333571 15266650 ~ 15268117 (-)
igfbp2 igfbp-2a coding downstream 398484 15186825 ~ 15203204 (-)
LOC110495638 LOC106575588 coding upstream 100913 15705622 ~ 15710368 (-)
LOC110495652 LOC106575579 coding upstream 238501 15843210 ~ 15848190 (-)
LOC110497059 donson coding upstream 265025 15869734 ~ 15873958 (-)
LOC110495653 LOC106574394 coding upstream 272794 15877503 ~ 15928773 (-)
LOC110497061 LOC106574727 coding upstream 392257 15996966 ~ 16015860 (-)
G1521339 NA non-coding downstream 2275 15598874 ~ 15599413 (-)
G1521337 fam171b non-coding downstream 11860 15589085 ~ 15589828 (-)
G1521315 NA non-coding downstream 41434 15557173 ~ 15560254 (-)
G1521307 NA non-coding downstream 56340 15545095 ~ 15545348 (-)
G1520527 NA non-coding downstream 70788 15530119 ~ 15530900 (-)
G1521355 NA non-coding upstream 28014 15632723 ~ 15671237 (-)
G1521354 NA non-coding upstream 66612 15671321 ~ 15674925 (-)
G1521387 NA non-coding upstream 151513 15685901 ~ 15815957 (-)
G1521485 NA non-coding upstream 221139 15825848 ~ 15826369 (-)
G1521488 NA non-coding upstream 223442 15828151 ~ 15866665 (-)
G1521308 NA other downstream 53205 15547876 ~ 15548483 (-)
G1520339 NA other downstream 324667 15276063 ~ 15277021 (-)
LOC110495477 fundc1 other downstream 1014129 14580962 ~ 14587615 (-)
LOC110495482 LOC106575623 other downstream 1094370 14506227 ~ 14507592 (-)
G1521563 LOC106575575 other upstream 390255 15994964 ~ 15995317 (-)
LOC110495656 NA other upstream 417758 16022467 ~ 16024382 (-)
G1521546 LOC100380633 other upstream 450419 16055128 ~ 16084966 (-)

Expression


Co-expression Network