LOC110495638 (LOC106575588)


Basic Information

Item Value
gene id LOC110495638
gene name LOC106575588
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15705622 ~ 15710368 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570975.2
TTTCGTACGTCATCATGATGGAAAAGCGGAAGCGGAAACAACTATTTGGCACAGTGTTTGCAAATCTTCTGGTGTGAGCATCAACGTCAATTAATTAACTTCTTTACTCCCTAAAATGGCTCTTGAATCAAGAATCACACAAGAAGAGATTCGAAAAATCCCCGAAAAGCCTATCGACCGAGAAAAGACGTGTCCTCTTCTGCTGCGGGTATTTACGACCAACGGTGGCAGGCATCACAGAGGGGACGAATTCGCACGAGGACAAGTCCCTTCAAGTGAGCTGCAAATCTACACATGGATGGATGCCTCGCTAAAAGAGCTGACCAGCCTTGTGAAGGAGGTGTACCCTGAAGCTCGGAAGAAAGGAACACACTTTGGTTTCGCCATCGTTTATCCTGAGCCCAAAAGAAATGGCTACAGAGTGAAAGACATCGGCAACACTGTGTCAGGCAGGAAGGGGGAAAATGACTCCATGACGCTACAGTCGCAGCGCTTCCAGATAGGAGACTACCTGGACATAGCCATCACACCACCCAACAGAGCCCCCCCACTTAACCCACGCATGGGCATGGGGAGGCCCTTCTGAACGCATCCACACCTGaacataataaccatcatatcacaAAACCCAAACCCACCTCTAAACATACATAAAGCCTTTCTGATCACACTGACTGACTCTTACCATCTCTCAGGAGACTACCGTGACTTTCAATAGGGCCATCCTTCAGATTTCACTGTCCCCCACATACATGCTTTTTTGGGGGCCTTTTTATTTTCTGATAGATCATACTTATCAGACATGCATGTTCATTTTTTACCCTCTTGTCTCCCATCTTGGATAATGTGAAATAAAGTTGCCGTCTTTCGTCTTAAAA

Function

NR:

description
PREDICTED: histone deacetylase complex subunit SAP18-like

GO: NA

KEGG:

id description
K14324 SAP18; histone deacetylase complex subunit SAP18

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570975.2 True 878 mRNA 0.46 4 15705622 15710368

Neighbor

gene id symbol gene type direction distance location
LOC110495443 LOC106574666 coding downstream 100913 15601688 ~ 15604709 (-)
LOC110495447 LOC106575526 coding downstream 104747 15595085 ~ 15600875 (-)
LOC110495442 LOC106574707 coding downstream 204835 15434412 ~ 15500787 (-)
LOC110495436 LOC106574694 coding downstream 299075 15345980 ~ 15406547 (-)
inh inh coding downstream 437505 15266650 ~ 15268117 (-)
LOC110495652 LOC106575579 coding upstream 132842 15843210 ~ 15848190 (-)
LOC110497059 donson coding upstream 159366 15869734 ~ 15873958 (-)
LOC110495653 LOC106574394 coding upstream 167135 15877503 ~ 15928773 (-)
LOC110497061 LOC106574727 coding upstream 286598 15996966 ~ 16015860 (-)
LOC110495656 NA coding upstream 312198 16022467 ~ 16024382 (-)
G1521354 NA non-coding downstream 30697 15671321 ~ 15674925 (-)
G1521355 NA non-coding downstream 34385 15632723 ~ 15671237 (-)
G1521339 NA non-coding downstream 106209 15598874 ~ 15599413 (-)
G1521337 fam171b non-coding downstream 115794 15589085 ~ 15589828 (-)
G1521315 NA non-coding downstream 145368 15557173 ~ 15560254 (-)
G1521387 NA non-coding upstream 45854 15685901 ~ 15815957 (-)
G1521485 NA non-coding upstream 115480 15825848 ~ 15826369 (-)
G1521488 NA non-coding upstream 117783 15828151 ~ 15866665 (-)
G1521452 NA non-coding upstream 138312 15848680 ~ 15849851 (-)
G1521498 NA non-coding upstream 156327 15866695 ~ 15867023 (-)
G1521308 NA other downstream 157139 15547876 ~ 15548483 (-)
G1520339 NA other downstream 428601 15276063 ~ 15277021 (-)
LOC110495477 fundc1 other downstream 1118063 14580962 ~ 14587615 (-)
G1521563 LOC106575575 other upstream 284596 15994964 ~ 15995317 (-)
G1521546 LOC100380633 other upstream 344760 16055128 ~ 16084966 (-)
G1521712 NA other upstream 707882 16418250 ~ 16418918 (-)

Expression


Co-expression Network