LOC110495644 (LOC106575583)


Basic Information

Item Value
gene id LOC110495644
gene name LOC106575583
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15796262 ~ 15801788 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570980.2
TTTCACCGACCAACTTTAGTGAAACGACAACAAGGTCGCTATCAGCCGGTAAGCAGAATCAGAGAGAGGTTTCAACCAACATTTCTTTGATAAAACGAACAGCTAGACTTTCATAAACATTGCCAATATGTCCAAACTACAGTTGTTGAATGTGTTCGTCACCGAGCGTTTATCAGCAGCTGCTGTGGAGATATTCGTGGTCGTGGAGAAGATTATAGCGGAGTATCAGGAAGAAATCTGCCGTTCAGCAGAGGCGAATGAACGTCTACGGAGGCTGTTGGACATGGTTAGCAAACCAGAAATAACGTTACACAGAGACTTCCAGCTACTGTCTCCTGCTGTTCCCCCTGAGCAGCAGAACTGTGAGCAGGAGTGGAGCCCCAGTCTAGAGCAGGAGGACCCAGAACCCACACAGATTAAAGAACAACAGGAGCTCAGACTCAGTCAGGAGGACTCACCTCAGCCCTCACATCTTTACCAAAACCAAATTgttggtgatggagagaggagcgCTCTACCTATCATCATAACTGAAGATATAAAAACAGAACCTGATGGAGAGGGCTACAGAGTAGCAGAACCAACCAGTGATCAGCCCCTCTCAGTTCATCCAGACTGCTCTGCTGCAGTGGAGAAGCCATATCAGTGTAAACAATGTGGCAACAGCTTCACATGTAAGGGACACTTGACCATCCATTCAAGAACACACATAGGAGTGAAATCTTATCTGTGCAAACAATGTGGCAAAAGCTTCATCCAGAAAGGTGACTTGGACAGACATACAAGGATGCACACAGGAGATAATCCATACCAGTGCAAACAATGTGGCAAAATGTTTAGCCAGAAGGGAAGCTTGACCATCCATTCAAGGATACATACAGGGGAGAGACCATATCAGTGTAAAGACTGTGGCAAAGCCTTCAACCAGAAGATAGAATTGACATTGCATATGAGAGCTCATACAGGAGAGAGACCATATATCTGTCCTGTATGCAAGAAAGGTTACATCACATTAAGCTATTTAAGACGTCATCAGCGtgttcacacaggggagaaaccttaccaGTGCAAAGAATGTTACAAATGCTTTGGTTATAAACATCGCCTAACATCACATATGAACACTCATACTAAAGGGCATAAATGATATTACTACACTGAGTGCAATAATAGCCTGAAATTAATCTGAAATGAAAACAACAAATGAATACATTGTCATTGTGAATTTCTTAATACTTCCAACTTCTGAATTATTATGTTCTGTTTTCTGGCAATTGACAACATAACAAATTTAATAATGTGTGTTGAGGGGAAATCACCAGTCAGCATCAGATTGGTAAACTGAATCTAGCGCTCAGTTTCAGGGACCTACCCTCCATGACACTGCTGGCTTCAGGAAGTCGTCACAGCTGTATCTAGCACAGAACACACTCCTGTTCGCCGTATACACAAATAACAAATGTACGCAAAAACAGTGACCTCACCTTCATCAAATACCTGTATGCGGACGACATGGCTCTGGTTGCTTGCCTGGATGGTAAATCCAGCTCAAGTTTCTCCCAGTTTTGACCTCGTGACATGTTTTGACAATAGCTTCAATGACGTCCATTTCACCAAGACTAAAGAACAATGCCTTGGTGGTAAGATGCGGAATAATGCAAGCGAACACACACTGACCATGGTGTAAAGATCCCTGATCGAGAGTGTTCTCACCTTCATCTCCACCTGGTATGGGAATTGGGATCCTCTCGTTCAGGGACAGGAGTAAACTGGCAAAAGTTGTCAGTCAGGTCAGCAAAATAGTCAGCAGCAAAACAGACCACAACTGCAAGAACTGTACACACAGAACATTACAAGGAAAGCACTCCAGGTCTTCAACGACCACGCCCGCCCACTGCATTATCCTTCCAAATGCTGCCGTCTGGTTGGAGGTGCCACTCGCACGGAAGAATGGCTGGAGAAATCCCCTCCTCAGTGACAATTCTAAATAAGATGAACTGACATGTAAATGCTTCATGTAATGTGTATGTTTTCATCCATTTAATGTAAGCCAGAGCGCCAAAGACACTTTCCCATTCTGTGCAAACTTAATGGACCAAAAGGTTTTCTAATCTCATCTTTCTAAACAACAGTAGTTCTTGTTCAATTGTTTAACAATGACATATGGGACATTTGGGCCACTATCACATCTGTACTGACAGCTGCATGTTAGAATAttgatgtagtctatcacatTTGTTTCTACTTCCAGTGTAACCCCCTAGAGTCCATTGACACATTGgtgtgtcaatctaagtaacataataaaaaatctgtcagtttaagcta
>TU1740883
TAAAACGAACAGCTAGACTTTCATAAACATTGCCAATATGTCCAAACTACAGTTGTTGAATGTGTTCGTCACCGAGCGTTTATCAGCAGCTGCTGTGGAGATATTCGTGGTCGTGGAGAAGATTATAGCGGAGTATCAGGAAGAAATCTGCCGTTCAGCAGAGGCGAATGAACGTCTACGGAGGCTGTTGGACATGGTTAGCAAACCAGAAATAACGTTACACAGAGACTTCCAGCTACTGTCTCCTGCTGTTCCCCCTGAGCAGCAGAACTGTGAGCAGGAGTGGAGCCCCAGTCTAGAGCAGGAGGACCCAGAACCCACACAGATTAAA

Function

NR:

description
zinc finger protein 239-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570980.2 False 2328 mRNA 0.43 2 15796262 15801788
TU1740883 True 331 TUCP 0.48 2 15796352 15799881

Neighbor

gene id symbol gene type direction distance location
LOC110495643 LOC106575583 coding upstream 583 15775465 ~ 15795679 (+)
LOC110495645 LOC106575584 coding upstream 1568 15791145 ~ 15794694 (+)
LOC110495642 LOC106574719 coding upstream 46625 15734320 ~ 15749637 (+)
LOC110495640 LOC106599837 coding upstream 65432 15723707 ~ 15730830 (+)
LOC110495639 LOC106575596 coding upstream 73073 15721333 ~ 15723189 (+)
LOC110495646 LOC106575584 coding downstream 2391 15804179 ~ 15808486 (+)
LOC110495647 NA coding downstream 15709 15817497 ~ 15820461 (+)
LOC110495648 LOC106575580 coding downstream 24060 15825848 ~ 15841645 (+)
LOC110495650 LOC106575578 coding downstream 45580 15847368 ~ 15852257 (+)
LOC110495649 LOC106574731 coding downstream 50856 15852644 ~ 15865039 (+)
LOC110495637 LOC106575461 non-coding upstream 121600 15622187 ~ 15674929 (+)
G1520560 NA non-coding upstream 164177 15577484 ~ 15632085 (+)
LOC110495451 fbx36 non-coding upstream 181586 15603978 ~ 15615215 (+)
G1520565 NA non-coding upstream 189444 15590725 ~ 15606818 (+)
LOC110495448 LOC106575529 non-coding upstream 233948 15554859 ~ 15563239 (+)
G1520677 NA non-coding downstream 22939 15824727 ~ 15825140 (+)
G1520691 NA non-coding downstream 67946 15869734 ~ 15870666 (+)
G1520697 NA non-coding downstream 74363 15876151 ~ 15878418 (+)
G1520704 LOC106595378 non-coding downstream 84554 15886342 ~ 15893668 (+)
G1520705 NA non-coding downstream 85397 15887185 ~ 15887551 (+)
LOC110495440 LOC106575601 other upstream 580018 15207355 ~ 15251952 (+)
il8r il8r other upstream 896090 14898154 ~ 14901354 (+)
G1519733 NA other upstream 981376 14813982 ~ 14814886 (+)
LOC110495481 LOC106574739 other upstream 1238916 14556326 ~ 14558589 (+)
G1519538 NA other upstream 1297125 14498786 ~ 14499137 (+)
G1520742 NA other downstream 117369 15919157 ~ 15922899 (+)
G1520748 NA other downstream 136442 15938230 ~ 15938818 (+)
LOC110495674 LOC106575504 other downstream 663725 16454118 ~ 16468453 (+)
LOC110527374 LOC106592210 other downstream 1822028 17623786 ~ 17631132 (+)
G1522415 LOC106575491 other downstream 1964431 17766219 ~ 17766694 (+)

Expression


Co-expression Network