LOC110497061 (LOC106574727)


Basic Information

Item Value
gene id LOC110497061
gene name LOC106574727
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 15996966 ~ 16015860 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951995.1
gaaacACATTGTGCTTTTCCATCAGGGTCAGAACAGGCCTGAGGATTCCATCAACTCCCACACACTGACCCCAGAACAGACCTCACACTGTTCTGCCAGCCTACACTGACACCATACCCACAGACTCTGAGTCAGTCAGTTGGTGCCTATTGTTGCTGTTGTTTGAGGATTGATAAAAACTTATCCTGGTGCACCAAAAGAGGCAGAGTTTCTGCATTGTAGGTTATTAAGGGCAGTGAATAAGCTAATTTTACTGGAATCATAAACTGAAACTTTTGCATCAGGAAGAAATTATTGTAGAGGGGCACATGGACCTGATTACGTATCTAAACAAGTTTACACGCTGTTCTCTGTTTGGCATGGGCTATTATTCATTCATTATGTCAGTACCTGTAGCTGAATTCAACACATCAGAACTACAATCTATAAACGAAAGACACCCACCAGACAGGGAAAACACCCAAACAGTGTGTCTATTATGCTAGCCGTGTGTGACTAACAAAGAAGGAGTGTGCTGTGTAAAACGTCTCACTGTCCTGCTCTGCATATCTAAACCCACCTCCCCTCGATCTTACCACCCCAATCATGGACACCCACAGCTACAGAACCCTCAGACCCGGTCTGGTCTCAGTcagcccagacagagacagtaactTTCATGAGTTTCTCTGACAGATTGATTTACGGATCGGGCTGTGTCTTTGGACCTCTAGGTTATGAGTCCATAAACTGATACCTTGACTTGTGTTGTCACCATGGCCTGGTTTGACATAGCAGCCAAAAAGCTGGGGTTCCCAACTATCGAGCTGTTTGTCAAGGCTGGCAGTGATGGTGAGAGCATCGGGAACTGTCCGTTCTCCCAGCGCCTCTTCATGATTCTGTGGCTGAAGGGAGTTATCTTCAACGTCACCACAGTTGACCTCAAAAGGAAACCGGCGGACCTGCAGGACCTGGCCCCGGGGACCAACCCTCCATTCGTCACATTTAATGGGGAGGTGAAGGTCGACGTCAACAAGATAGAAGAGTTCCTTGAGGAAAAACTCACGCCACCACGGTACCCCAAGTTGGCGACTAATCACCCAGAGTCAAACACCGCAGGTATAGATGTGTTCTCCAAGTTCTCTGCCTACATCAAGAACCCCCGCAAAGATACCAACGACGGCCTAGAGAAGGCCCTGTTGAAGTCTCTGAGGCGGCTGGATGAATTCCTGAGGACCCCCCTGCCGGAGGAGATCGATGCCAACAGCACAGAAGACCCTCAGGAGTCCACACGCTGCTTCCTGGATGGACCTGACCTCACACTGGCAGACTGCAACCTGCTGCCCaaactacacattataaagGTGGTGGCCAGGAAGTACCGTAGCTTTGAGATCCCGGCGGAGATGGCGGGGGTGTGGCGCTATCTGAACCACGCCTACAAGAGGGAAGAGTTTACTAACACCTGTCCTGTTGAGCGCGAAATCGAATTTGCCTACATAGATGTGGCCAAACGAATCAAATAgcgacagggggaggagggagagactgagaaggCCCAATcccaaattgtgtgtgtgtgcgtgtgtgtgtgtgtgtctttgtgcacTCACAGGTTGGGTTGCATGTAGTGTCATGGCTGCTGTGATTGTAAGACCACTAGACAGAGAGGTCTGCATCCATTTCACATCCAGTCCTTTAGACCAAAGCCCTCTGCGGTGCACTATAATACAGCTGTATGGTGTCATTGAAGACACAGACACTGTTAGAAACCTAGAGGAGGAACTCTAACAGCGTATAGTACTATCTACTATCTGCAACATTGTAAAACTGTCCTATAGCAGCCATAAGCATTCATTAGAGTGTTATAACCTCTGTGTCTTAGAGGAATAGCAGAGCACAGGTAGACACGCCATACTTATATGAATATGCAACACTTTGGCCTTGATCACAGTATTAACCTATGTCTAAAAATTAACATACATATACTTTATAAATTCACTTTTCATTAGTTTCTCCCCCGTCTTATTTTGGCTATCTATGGGTGAATAATAATCAATAGTAAAAAGCTTTTTGATGTCAAGGTCTGACTTATCTATTTGTACGTTTTGTAAAAGCAAATCTGCTTTAATACCATTTATATCGATTTCTATTGACCATAACAGGATTGTGGGTGGGGCTTCCTGTTGAGAAGCTCACCTGTTTGGGCCTTCCTGAACATGCAAGTTGAATCGGAAGCCATTTTGATTGTGGCGGAAGTGTGTACTGTATCTCTCTATGCACCAAACAAATACTGACACAACCCTGTGTACTCGCCTTATAATCCTCACCAGAGGAGACTTTATTAAACTGATTTCAGAACAGT
>XM_036951996.1
TTAAACCTCAGCTGCTctgcagggaggaagaggagggaggcacATGTTTCCATACAACACCCACAAACTTTAAAACTAGCCTACACATCCATTTTCTCAAGACTACACCCAGAGGCCTACATGCAAGTTAACAGTATCGAGGTATTGTGTCTGGACCCTCGACTGACACTTTTTGACAGCACTACTTTCATTCTGcatgcagagatcatcaactCTTGTCTGAGATGTCGTCTCCAGCTGCTGCTACACGAAAGGCTGGCAGTGATGGTGAGAGCATCGGGAACTGTCCGTTCTCCCAGCGCCTCTTCATGATTCTGTGGCTGAAGGGAGTTATCTTCAACGTCACCACAGTTGACCTCAAAAGGAAACCGGCGGACCTGCAGGACCTGGCCCCGGGGACCAACCCTCCATTCGTCACATTTAATGGGGAGGTGAAGGTCGACGTCAACAAGATAGAAGAGTTCCTTGAGGAAAAACTCACGCCACCACGGTACCCCAAGTTGGCGACTAATCACCCAGAGTCAAACACCGCAGGTATAGATGTGTTCTCCAAGTTCTCTGCCTACATCAAGAACCCCCGCAAAGATACCAACGACGGCCTAGAGAAGGCCCTGTTGAAGTCTCTGAGGCGGCTGGATGAATTCCTGAGGACCCCCCTGCCGGAGGAGATCGATGCCAACAGCACAGAAGACCCTCAGGAGTCCACACGCTGCTTCCTGGATGGACCTGACCTCACACTGGCAGACTGCAACCTGCTGCCCaaactacacattataaagGTGGTGGCCAGGAAGTACCGTAGCTTTGAGATCCCGGCGGAGATGGCGGGGGTGTGGCGCTATCTGAACCACGCCTACAAGAGGGAAGAGTTTACTAACACCTGTCCTGTTGAGCGCGAAATCGAATTTGCCTACATAGATGTGGCCAAACGAATCAAATAgcgacagggggaggagggagagactgagaaggCCCAATcccaaattgtgtgtgtgtgcgtgtgtgtgtgtgtgtctttgtgcacTCACAGGTTGGGTTGCATGTAGTGTCATGGCTGCTGTGATTGTAAGACCACTAGACAGAGAGGTCTGCATCCATTTCACATCCAGTCCTTTAGACCAAAGCCCTCTGCGGTGCACTATAATACAGCTGTATGGTGTCATTGAAGACACAGACACTGTTAGAAACCTAGAGGAGGAACTCTAACAGCGTATAGTACTATCTACTATCTGCAACATTGTAAAACTGTCCTATAGCAGCCATAAGCATTCATTAGAGTGTTATAACCTCTGTGTCTTAGAGGAATAGCAGAGCACAGGTAGACACGCCATACTTATATGAATATGCAACACTTTGGCCTTGATCACAGTATTAACCTATGTCTAAAAATTAACATACATATACTTTATAAATTCACTTTTCATTAGTTTCTCCCCCGTCTTATTTTGGCTATCTATGGGTGAATAATAATCAATAGTAAAAAGCTTTTTGATGTCAAGGTCTGACTTATCTATTTGTACGTTTTGTAAAAGCAAATCTGCTTTAATACCATTTATATCGATTTCTATTGACCATAACAGGATTGTGGGTGGGGCTTCCTGTTGAGAAGCTCACCTGTTTGGGCCTTCCTGAACATGCAAGTTGAATCGGAAGCCATTTTGATTGTGGCGGAAGTGTGTACTGTATCTCTCTATGCACCAAACAAATACTGACACAACCCTGTGTACTCGCCTTATAATCCTCACCAGAGGAGACTTTATTAAACTGATTTCAGAACAGT
>XM_036951994.1
GGAGCTGGGCTGGGGGGATATAGGCTCTGGGCGGATTTAGATGAGGCAGGCTGGTCATGTGGGGATCAACTTCTGAAACTCAGCCTAATCCtttggagaaggagggagagggagagggagagagagagagagagagagagagattgtactTTGACCAACTGTACACAGGCACTATTTACAGATTGGAGCCCCAGGCAGCGACAACTAGAAGCTGTGCGTGTGTCCGTggaacatacaaacacacacttatCCAACTTTCTCAAACTTGGCTTGAACTCCTGGACACATACTCGTTGGAACCTTGAACACACTCCTTCCCAGTGTGTGTTGGTCTTCCAGTAACCATGGAACAGTCTGAAGCTAATGGCCTCAGCCCGGACCTCTCCAATGGAGCCATCATCCACAGCCCTATAGGAACCTGTACCAACccggacagacagagacaacgagatgaagaggaggaggaggatgtagaacTAGCAGAGGAGGTGTTAGAACTGGGGGAGGAGGTGGGCGAGGACATGGAGTACATTGGGATGGCAGGTGCAGCTGATCATTTCGATGTGACGATGCAAGCTAGCGGGAgcggaggaaaggagggagaggagggagagagggggattgaAGAGGAGGTTGGTTtacaggaaaagagagagggggataaaggGGAGCGGGAGCTGACCGTGACAGTTGTTGTAattgaagaggaggagaaagagcaggagaaaTTTGTAGAGGCTGTTGAAGAAGAGAAGTtcgctgagagagaggaggagtcagCAGgggcggagaaagagagagaaatagaggagagagaagctcCTCTCCCCCCACCACCCCCTAGTTTACCTGAAACTGAGTCCATTAATGATGAGGTAGAGAGGAAAGCATTGGAGACATCTCCAGAGGCAGAAAAGGCACAAGTCATTTTGCCTGTTGatgagacagagaagacagaggaCAATGTCGGTTTGACGACAACAGAACCGCCAGTCCCGTCAACTAATGATGAGGTGGAGAGTAAAGAAGAGCTGTGTACAGAGAGTCGAAAGCCAGAAACCACATCCACTACAGATGAGTTAACGAAGGGAGAGCAGAGTGGCGGCCAGGATGCAGAGATGCCCATCAGCCAGGTGACTAATGATGATGGCATGGCGAGAGTGAGTGATGAAAGCGGGAGTCAAGTGACCGATGACTGTCAAACGGTGTCCACTAGTGATGAGGTCAGAGAAACACGgcaggagggaggacaggaagagGTGCCTAAACATCAGCCAGCCAATGACAATgaaggagagagcgaggaaaGTAACAATAAATTGGCAAAAAATCGACAGGTTTCACaagaagagagggatgataaCCAGCAGGGAAGTGAGACGAGTACAGAGAAAAAAGAGGAGGAGGTTAAAAGCCATGTTACAGAAGAACAGGGAGAGACAACTAAAGCAGTTTTAGTGAAAAAAGAGGAGGGGCGTCAAGCGACAGAGCACCAGCCCCCGTTGTTTGTTACCAAGGAGTTCATAGCGCTTGGAGTCGTCAAGAGTCAGGCAACCACAGCTCAACAGCCACAGGATGTTGTCACTCCACCTgttgaggtagagggagggagcaagAGCAAGGCACAGCCACTGATACAGCCCAATGAGAGTCAGGAGGGTGAGAACGGCTCTAAAGAGGAGGGAGGTTTACAACAGACAGAACAGCAGCTACAGGTGGAAGAGGGTGACAGTGATAGGGCAGTGAAGGGaggtggtagggagagagaagagccGCAACAGGTTGGAGATAATGCGGTGGTGGGGATGGACACAGAAGGCAGCAAAGTAGAGGAGGAGCAAAAGAAGGAGGATAATGTAGACatagcagaggaagagagaagaggtggcAGTATGGAGGAACAGACGGAAAAGGCTTTGGAGCCTGATTATGCTGccagagaagagggggaagagaaagaaGACAAAGTTGTAGCTCAGCCACAGGTACAGATACTCAAGGGTTCAGCAGAAGCTACACAGGAGGACGACGACAAGGATTTAGAGCATGTCGAGGAGGCTTTCGAGcttgaggagggaggagacatggagaaagAACAGCCAGGAGAGGTCATTCTGGATGAGCCCGGAGCTGCAGAGGTAGGAGGGGCTGAAGAGATGGATAATCCAGTCCCGGTCTCAGAGATAGGAAcgggaggagcagagggagggggtgagTTGGAGGAACAGCCAGTGACAAACATTGACGATAATCTAGACTCACAATCAGAGGTAGCGATTGAGATGGCGGAAGAGCCAGAAGATCTCATTGAGGATGAGTCTAAATCTGCATTAGAGGGATGCAGCGAGAGAGTAGAACAGCCAGGGCCTGCCACTAAGGATGAGCCAGTAATGTTTGGGAAGGAATACACAgcgaaggaaagaaggaaagagaagaaagaagagGTGGAGCTAGGGGTCAAAAGTCGCAAAGCCAGGATAGAGAATGGGTTCCCTGGAACAGAGGAGGTGAAACGACAACTGCTGAATGAGATGCTGCTAACTCCCACAAGGCTGAGACAAGGAAAAATGAAAGAGGAGGCGACAGTAAAAAGAGATAGGGTGACACCCCGCAGAGGGAGCAACGACTGGATCAAGAAGGAGGCCCCAGCGGAGGCGCAGACCCGCAGAGGGAGCAACGACTGGATCAAGAAGGAGGCCCCAGAGGAGGTGCAGACCCGCAGAGGGAGCAACGACTGGAACAAGAAGGTGGCCCCAGAGGAGGCGCAGACCCGCAGAGGGAGCAACGACTGGAACAAGAAGGCGGCCCCAGAGGAGGCGCAAACCCGCAGAGGGAGCAATGACTGGAACAGGAAAGCGGCCCCAAAGGAGGCGCAGACCCGCAGAGGGAGCAACGACTGGAACAAGAAGGCGGCCCCAGAGGAGGCGCAGACCCGCAGAGGGAGCAACGACTGGAACAAGAAGGCGGCACCAGAGGAGGCGCAGACCCGCAGAGGGAGCAACGACTGGAACAAGAAGGCGGCCCCAGAGGAGGCGCAGACCCGCAGAGGGAGCAACGACTGGAACAAGAAGGCGGCCCCAGAGGAGGCGCAGACCCGCAGAGGGAGCAACGACTGGAACAAGAAGGCGGCCCCAGAGGAGGCGCAGACCCGCAGAGGGAGCAACGACTGGAACAAGAAGGCGGCCCCAGAGGAGGCGCAGACCCGCAGAGGGAGCAACGACTGGAACAAGAAGGCGGCCCCAGAGGAGGCGCAGACCCGCAGAGGGAGCAATGACTGGAACAAGAAGGCGGCCCCAGAGGAGGCGCAGACCCGCAGAGGGAGCAACGACTGGAACAAGAAGGCGGCCCCAGAGGAGGCGCAGACCCGCAGAGGGAGCAACGACTGGAACAAGAAGGAGGCCCCAGAGGAGGCGCAGACCCGCAGAGGGAGCAACGACTGGAACAAGAAGGCGGCCCCAGAGGAAGCGCAGACCCGCAGAGGGAGCAACGACTGGAACAAGAAGGCGGCCCCAGAGGAGACGCAGACCCGCAGAGGGAGCAACGACTGGAACAAGAAGGCGGCCCCAGAAGAGGCGCAGACCCGCAGAGGGAGCAACGACTGGAACAAGAAGGTGGCCCCAGAAGAGGCGCAGACCCGCAGAGGGAGCAACGACTGGAACAAGGAGGCGGCCCCAGAGGAGGCACAGACCCCctggtggagggaggactgggCCAAGAAGGAGGCCCCAGAGGAGGTGCAGACCCGCAGAAGGAGTGATGACTGGATCAAGAAGGAAGCCCCAGAGGAGGCGCAGACCCCTgggtggagggaggactggatTAAGAAGTTGTCCCCAGAGGAGGTGCAGACCCCTGAGCGGAAGGAGGACGGGATTAAGAAGTTGTCCCCAGAGGAAGCGCAGACCCCCGAGAGGAGGGAGGACTGGATAAAGGAGCTGAAGTCGGTGCTCAAAGAGGAGGTACTTTCCccgaagaggagagaggagcaggtgaagaaaaagaagaagaaggtgGTGGTCATGGACGAAGTGCCCACGTTCATGCACCAGAGGACAGAGGTGAAGATAGAggtgaagaaagagaaggaggcgCAGGGGGAGGAGAAGACGCCAAAGAAGTCTGTGAGGCTGCAGAGCCCAACTCCTCACGAGGAAGACAGCGACAGTCCGGACCCCCAGGAGTACGAGATCTCCCTCTATGTCAAGGCTGGCAGTGATGGTGAGAGCATCGGGAACTGTCCGTTCTCCCAGCGCCTCTTCATGATTCTGTGGCTGAAGGGAGTTATCTTCAACGTCACCACAGTTGACCTCAAAAGGAAACCGGCGGACCTGCAGGACCTGGCCCCGGGGACCAACCCTCCATTCGTCACATTTAATGGGGAGGTGAAGGTCGACGTCAACAAGATAGAAGAGTTCCTTGAGGAAAAACTCACGCCACCACGGTACCCCAAGTTGGCGACTAATCACCCAGAGTCAAACACCGCAGGTATAGATGTGTTCTCCAAGTTCTCTGCCTACATCAAGAACCCCCGCAAAGATACCAACGACGGCCTAGAGAAGGCCCTGTTGAAGTCTCTGAGGCGGCTGGATGAATTCCTGAGGACCCCCCTGCCGGAGGAGATCGATGCCAACAGCACAGAAGACCCTCAGGAGTCCACACGCTGCTTCCTGGATGGACCTGACCTCACACTGGCAGACTGCAACCTGCTGCCCaaactacacattataaagGTGGTGGCCAGGAAGTACCGTAGCTTTGAGATCCCGGCGGAGATGGCGGGGGTGTGGCGCTATCTGAACCACGCCTACAAGAGGGAAGAGTTTACTAACACCTGTCCTGTTGAGCGCGAAATCGAATTTGCCTACATAGATGTGGCCAAACGAATCAAATAgcgacagggggaggagggagagactgagaaggCCCAATcccaaattgtgtgtgtgtgcgtgtgtgtgtgtgtgtctttgtgcacTCACAGGTTGGGTTGCATGTAGTGTCATGGCTGCTGTGATTGTAAGACCACTAGACAGAGAGGTCTGCATCCATTTCACATCCAGTCCTTTAGACCAAAGCCCTCTGCGGTGCACTATAATACAGCTGTATGGTGTCATTGAAGACACAGACACTGTTAGAAACCTAGAGGAGGAACTCTAACAGCGTATAGTACTATCTACTATCTGCAACATTGTAAAACTGTCCTATAGCAGCCATAAGCATTCATTAGAGTGTTATAACCTCTGTGTCTTAGAGGAATAGCAGAGCACAGGTAGACACGCCATACTTATATGAATATGCAACACTTTGGCCTTGATCACAGTATTAACCTATGTCTAAAAATTAACATACATATACTTTATAAATTCACTTTTCATTAGTTTCTCCCCCGTCTTATTTTGGCTATCTATGGGTGAATAATAATCAATAGTAAAAAGCTTTTTGATGTCAAGGTCTGACTTATCTATTTGTACGTTTTGTAAAAGCAAATCTGCTTTAATACCATTTATATCGATTTCTATTGACCATAACAGGATTGTGGGTGGGGCTTCCTGTTGAGAAGCTCACCTGTTTGGGCCTTCCTGAACATGCAAGTTGAATCGGAAGCCATTTTGATTGTGGCGGAAGTGTGTACTGTATCTCTCTATGCACCAAACAAATACTGACACAACCCTGTGTACTCGCCTTATAATCCTCACCAGAGGAGACTTTATTAAACTGATTTCAGAACA

Function

NR:

description
PREDICTED: calponin homology domain-containing protein DDB_G0272472-like isoform X1

GO:

id name namespace
GO:0043269 regulation of ion transport biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0006821 chloride transport biological_process

KEGG:

id description
K05026 CLIC6; chloride intracellular channel protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951995.1 False 2344 mRNA 0.46 6 15996966 16001636
XM_036951996.1 False 1780 mRNA 0.47 6 15996966 16015860
XM_036951994.1 True 5729 mRNA 0.53 6 15996968 16008823

Neighbor

gene id symbol gene type direction distance location
LOC110495653 LOC106574394 coding downstream 68193 15877503 ~ 15928773 (-)
LOC110497059 donson coding downstream 123008 15869734 ~ 15873958 (-)
LOC110495652 LOC106575579 coding downstream 148776 15843210 ~ 15848190 (-)
LOC110495638 LOC106575588 coding downstream 286598 15705622 ~ 15710368 (-)
LOC110495443 LOC106574666 coding downstream 392257 15601688 ~ 15604709 (-)
LOC110495656 NA coding upstream 6706 16022467 ~ 16024382 (-)
LOC110495663 NA coding upstream 102241 16118101 ~ 16126127 (-)
LOC110495662 LOC106575549 coding upstream 119216 16135076 ~ 16164464 (-)
LOC110495664 NA coding upstream 153385 16169245 ~ 16171657 (-)
LOC110495661 NA coding upstream 165350 16181210 ~ 16210360 (-)
G1521564 NA non-coding downstream 1032 15995718 ~ 15995934 (-)
G1521562 NA non-coding downstream 2891 15993634 ~ 15994075 (-)
G1521540 NA non-coding downstream 26691 15970045 ~ 15970275 (-)
G1521539 NA non-coding downstream 28788 15967929 ~ 15968178 (-)
G1521538 NA non-coding downstream 29308 15967435 ~ 15967658 (-)
G1521572 NA non-coding upstream 17109 16032969 ~ 16033299 (-)
G1521575 NA non-coding upstream 21213 16037073 ~ 16037440 (-)
G1521582 NA non-coding upstream 31083 16046943 ~ 16052241 (-)
G1521583 NA non-coding upstream 38159 16054019 ~ 16054411 (-)
G1521584 LOC106575572 non-coding upstream 38885 16054745 ~ 16055020 (-)
G1521563 LOC106575575 other downstream 1649 15994964 ~ 15995317 (-)
G1521387 NA other downstream 237732 15685901 ~ 15815957 (-)
G1521308 NA other downstream 448483 15547876 ~ 15548483 (-)
G1521546 LOC100380633 other upstream 39268 16055128 ~ 16084966 (-)
G1521712 NA other upstream 402390 16418250 ~ 16418918 (-)
LOC110495686 LOC106574627 other upstream 921792 16915423 ~ 16946521 (-)
LOC118941063 LOC106574632 other upstream 993522 17009382 ~ 17011759 (-)

Expression


Co-expression Network