LOC110495657 (LOC100380633)


Basic Information

Item Value
gene id LOC110495657
gene name LOC100380633
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 16075992 ~ 16089889 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570998.2
TTCTATGTTACCATGGCAAAAAGTGCAGACGTCACGATCGAAAGGAACACTGTATATAAGTATTGGACCTTTTAATGAGACGGGGAGCTTGGATGCGTGTCCGGTAGGAGTGACACGTGTGGATAAGGGCGCATCCAGGGGCAATACATTTTTCAATTCGTTTTAAAGTAAATTGGGATTTGATTGTTCAATAAGTTTTTTTTCCTCCACAAACTGCAAACATGGGACGTGGAGAAGGACGGGAACAGTATGAGCTGGCGGCGACCTCTGAGCAGGGAGGCAAGAAGAAGAATGCCAAGGCCATGAAGAAGGAGAGGGACATGGATGAGTTGAAAAAGGAAGTTGATCTGGATGACCATAAACTGACCCTGGATGAGCTCAACCGCAAATACGGCACTGACCTTAGTAGGGGATTATCCAGTGCTAAGGCTGCCGAGAACCTTGCCCGTGATGGCCCCAATTCCCTGACCCCTCCTCCCACTACCCCTGAGTGGGTGAAGTTCTGCAAGCAGATGTTTGGCGGGTTCTCCATGCTGCTGTGGACTGGTGCTCTCCTCTGCTTCCTGGCCTACGGAATCCAGGCAGCCATGGAGGATGAGCCGGCCAATGATAACTTGTACCTGGGGGTTGTACTCTCTGCTGTTGTCATTGTTACTGGCTGTTTCTCCTACTACCAAGAGGCCAAGAGCTCAAAGATCATGGACTCCTTTAAGAACCTGGTCCCACAGCAAGCCCTGGTTGTCCGTGACGGTGAGAAGATGAACATCAACGCTCAACAAGTGGTGGTTGGAGATCTGGTGGAGGTGAAAGGTGGAGATAGGATTCCTGCCGATTTGCGAATCATCTCTGCCAGCGGTTGCAAAGTGGACAACTCCTCCCTCACTGGTGAATCTGAGCCCCAGACACGTACTCCGGACTACTCCAATGACAACCCCCTGGAGACAAGGAACATTGCCTTCTTCTCTACCAACTGTGTTGAAGGAACTGCCAGAGGTATTGTCATCAACACTGGTGACCGCACTGTTATGGGTCGTATTGCTACCCTCGCCTCTGGCCTGGAAGTCGGACGTACCCCAATCTCCATTGAAATTGAGCACTTCATCCACATCATCACCGGTGTGGCCGTCTTTCTGGGCATGTCTTTCTTTGTCCTGTCCCTCATCCTCGGATACTCTTGGCTGGAAGCTGTCATCTTCCTCATCGGAATCATTGTCGCTAATGTGCCTGAGGGTCTCCTGGCCACTGTAACTGTGTGTTTAACTCTGACTGCCAAGCGTATGGCCAAGAAGAACTGCCTGGTGAAGAATCTCGAAGCTGTTGAGACCTTGGGCTCCACCTCCACCATTTGCTCTGACAAGACCGGAACCCTGACTCAGAACAGAATGACCGTGGCTCACATGTGGTTCGACAACCAGATCCATGAGGCTGACACCACAGAGAACCAGAGTGGTACCTCCTTTGACAGGAGCTCTGCCACCTGGGCTGCCCTGGCTAGAGTCGCTGGCCTGTGTAACCGTGCCGTCTTCCTGGCAGAACAGAGCGGTATTCCTATCCTTAAAAGAGATGTGGCTGGTGATGCCTCAGAGTCTGCCCTGCTGAAGTGTATTGAGCTGTGCTGTGGGTCTGTGCAAGGCATGAGAGACCAGTACACCAAGGTTGCTGAGATCCCATTCAACTCCACCAACAAATACCAGCTCTCAGTTCACCTGAACAAGAATGAGGGTGAGTCCAAGCATCTGCTGGTGATGAAGGGAGCCCCTGAGAGGATCCTGGACCGCTGCTCCACCATTTTGATCCAGGGCAAAGAACAGCCTCTGGATGACGAGATGAAGGACTCTTTCCAGAACGCCTACATGGAACTGGGTGGTCTGGGAGAGCGAGTGCTGGGGTTCTGTCATTTCCAGCTCCCTGATGACCAGTTCGCTGAGGGCTTCCAGTTCGATTGTGAAGAGGTGAACTTCCCAACTGAGAATCTGTGCTTCGTTGGCCTAATGTCCATGATTGACCCTCCCCGTGCTGCTGTGCCTGACGCTGTAGGAAAGTGCAGGAGTGCTGGAATCAAGGTTATCATGGTCACTGGTGATCATCCCATCACTGCTAAAGCCATTGCCAAGGGTGTGGGCATCATTTCTGAAGGAAATGAGACTGTTGAAGACATTGCTGCTCGTCTGAACATTCCAGTCAATGAAGTTGACCCTAGGGATGCCAAGGCCTGTGTGGTCCATGGTGGTGACCTCAAGGACCTGAGCGCTGAACAGTTGGACGACATCCTGAAATATCACACAGAGATTGTGTTTGCCAGAACCTCTCCTCAGCAGAAGCTTATTATCGTGGAGGGCTGCCAGCGCCAGGGTGCTATTGTAGCTGTGACAGGTGATGGTGTGAACGATTCTCCTGCTCTGAAGAAGGCTGACATCGGTGTTGCTATGGGTATCTCTGGATCGGATGTATCCAAGCAGGCTGCCGACATGATCCTCCTGGATGACAACTTTGCCTCCATCGTGACTGGTGTCGAAGAAGGCCGTCTGATCTTTGACAACTTGAAGAAGTCCATCGCCTACACCCTGACCAGTAACATTCCAGAAATCACACCCTTCCTCTTCTTCATCATTGCAAACATTCCACTGCCCCTAGGAACCGTCACCATCCTCTGTATCGACTTGGGAACTGACATGGTCCCCGCCATCTCCCTGGCCTACGAAGCTGCTGAGAGTGACATCATGAAGAGACAGCCCAGAAACTCCAAAACAGACAAACTGGTGAATGAAAGACTTATCAGCATAGCCTACGGTCAAATCGGTATGATCCAGGCTTTGGCTGGGTTCTTCACATACTTTGTGATCCTTGCTGAGAATGGGTTCTTACCCTCTAGACTGCTAGGTATTCGTGTGGACTGGGACAACAAATTTTGCAATGACCTGGAGGATAGCTATGGCCAGCAGTGGACTTATGAACAGAGAAAGATTGTGGAGTTCACCTGCCACACAGCATTCTTTGCCAGTATTGTAGTTGTACAGTGGGCTGATTTGATCATCTGTAAGACCAGGAGGAACTCAGTCTTCCAACAAGGAATGAGGAACAAGATTCTCATCTTCGGCCTGTTTGAGGAGACCGCCCTGGCCGCCTTCCTGTCCTACTGTCCTGGGATGGGCATCGCCCTCAGAATGTACCCACTCAAACCCAGCTGGTGGTTCTGCGCCTTCCCATactctctcctcatctttattTATGATGAAATCCGAAAACTGATCATCCGACGCAGCCCAGGAGGTTGGGTGGAGAGGGAGACGTACTACTAGAAAGCATCCCGTGTGCATCGCCCAAGTTCTTGCATGGTTGTCTTGCTGCTCGGAATTTTAAGTTCTGTAAAATGTGGATGTGTTTTTATATAGGGAATGCGTGATACTAAAACACTGAGATCGAGATGATGAACCAAGACATTTGACATTGTGTGCCTTGTTTCTGGAACAGGACCAATTTTATACATGTTTTTAACAGTAATATAAATAAACTTTCAGTCAGCTCCCA

Function

NR:

description
PREDICTED: sodium/potassium-transporting ATPase subunit alpha-1

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function

KEGG:

id description
K01539 ATP1A; sodium/potassium-transporting ATPase subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570998.2 True 3528 mRNA 0.50 22 16075992 16089889

Neighbor

gene id symbol gene type direction distance location
LOC110495658 LOC100136184 coding upstream 15047 16047145 ~ 16060945 (+)
LOC110495655 LOC106574721 coding upstream 54096 16009775 ~ 16021896 (+)
LOC110495654 LOC106575575 coding upstream 79133 15993613 ~ 15996859 (+)
LOC110495649 LOC106574731 coding upstream 210953 15852644 ~ 15865039 (+)
LOC110495650 LOC106575578 coding upstream 223735 15847368 ~ 15852257 (+)
LOC110495667 LOC106575562 coding downstream 182347 16272236 ~ 16277918 (+)
LOC110497062 LOC106575548 coding downstream 198992 16288881 ~ 16332222 (+)
LOC110495668 LOC106575499 coding downstream 248436 16338325 ~ 16345761 (+)
LOC110495670 tgds coding downstream 262944 16352833 ~ 16367882 (+)
gucy1b2 LOC106575503 coding downstream 332356 16422245 ~ 16427538 (+)
G1520797 NA non-coding upstream 22595 16053091 ~ 16053397 (+)
G1520787 NA non-coding upstream 43592 16032153 ~ 16032400 (+)
G1520782 NA non-coding upstream 50277 16025516 ~ 16025715 (+)
G1520781 NA non-coding upstream 50725 16024980 ~ 16025267 (+)
G1520780 NA non-coding upstream 51215 16024542 ~ 16024777 (+)
G1520804 NA non-coding downstream 66011 16155900 ~ 16156236 (+)
G1520721 NA non-coding downstream 67378 16157267 ~ 16203602 (+)
G1520733 NA non-coding downstream 95324 16185213 ~ 16191473 (+)
G1520736 NA non-coding downstream 96096 16185985 ~ 16192172 (+)
G1520876 NA non-coding downstream 140688 16230577 ~ 16231069 (+)
G1520748 NA other upstream 137174 15938230 ~ 15938818 (+)
G1520742 NA other upstream 153093 15919157 ~ 15922899 (+)
G1520649 NA other upstream 259987 15756493 ~ 15816005 (+)
LOC110495644 LOC106575583 other upstream 276111 15796262 ~ 15801788 (+)
LOC110495440 LOC106575601 other upstream 859748 15207355 ~ 15251952 (+)
LOC110495674 LOC106575504 other downstream 375624 16454118 ~ 16468453 (+)
LOC110527374 LOC106592210 other downstream 1533927 17623786 ~ 17631132 (+)
G1522415 LOC106575491 other downstream 1676330 17766219 ~ 17766694 (+)
G1522437 LOC106575479 other downstream 1749780 17839669 ~ 17844014 (+)
G1522438 NA other downstream 1766252 17856141 ~ 17860614 (+)

Expression


Co-expression Network