LOC110495662 (LOC106575549)


Basic Information

Item Value
gene id LOC110495662
gene name LOC106575549
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 16135076 ~ 16164464 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952005.1
ATATAAAATTCACAGAACAAGAAAACGTTACTTTATTTTCAACTAAGCGGTCACGACGCATGCAGAGGGAAGAACTAAACCACATTTCACTTTCACAGCCTTGGGAAATTAAGATCAGAAGTAGGCTAGCTAACTAGCGCATATGCCTAAACTAACGCTCATCAGATTGTGTTTCTGGCTTTGTCTGGTGCGAACGGTGGTCTCCCGAGATGATCTTTATCATGAAGTGGGAGGGAAGCTCGTGTTGAAACCAGACAAGTCCACAGTGACTGACCCCATCACAAGCATCCTATGGAAGCATGGGAAGAACAAGGTGGCAGAGTGGGACAAGGATTTTGGTGGTCTGGATATCTATGCTGCCTTCAAAGAGCGTACAACCCTGGACCAGACTTCTGGAGAGCTGAGAATCAGTGGATTGAAGAAAACAGACAGTGGAGTTTATTCTGTGGAGTTCAACAGCAAACTGCTTAACAAGACATATACATTATCTGTTATCAAGGCAGTCCCCAAACCCACAATCACTTCTTCCTGTAACCCAGACAAAACctcctgcactctgacctgtgaGGTTGACACCACTGATGCTGAACCAGTCACCTACAgctggaaagagggagagggggcgtGGGAGGACTTAGACAAACAGCTTAATATCAATAAGAGTGACACTGGCAAATCAACCAAGTACATCTGCAAAATGAAAAACCCTGTTAGTGAAGAAGTCAGTGATCCAATTGGACAGGTGTTTGATCCAGAGGCAGTCCCTAAACCCACAATCACTTATACCTGCAACACAGACAAAATCTGCATTCTGACCTGTGAGGGCGACACCACTGATGCTGAACCCGTCACCTACAGCTGGAAAGTGGGGGAGGGGGCGTGGGAGGTCATAGGAAAACAGCTGATTGTCTCTAAGAGCGACACTGGCAAATCAACCAACAGTTACAAGTACATCTGCAAGCTGAAGAACTCTGTTAGTGGGGAAGTCAGTGAGCCAGTTGGAGAGGTGTTTGGTCCAGAGCCTTCTGAAGTCGGTGATGGTGGGATTGTTGTTGGTGTTGTCGTTATCATTGTAGCGCTTGTTGCCATTGTCATAACAAGTAAGAACAGCacatctatagtaacagatcactgcacatgtacatagTTGTGAATCACAGAT
>XM_021571008.2
ATATAAAATTCACAGAACAAGAAAACGTTACTTTATTTTCAACTAAGCGGTCACGACGCATGCAGAGGGAAGAACTAAACCACATTTCACTTTCACAGCCTTGGGAAATTAAGATCAGAAGTAGGCTAGCTAACTAGCGCATATGCCTAAACTAACGCTCATCAGATTGTGTTTCTGGCTTTGTCTGGTGCGAACGGTGGTCTCCCGAGATGATCTTTATCATGAAGTGGGAGGGAAGCTCGTGTTGAAACCAGACAAGTCCACAGTGACTGACCCCATCACAAGCATCCTATGGAAGCATGGGAAGAACAAGGTGGCAGAGTGGGACAAGGATTTTGGTGGTCTGGATATCTATGCTGCCTTCAAAGAGCGTACAACCCTGGACCAGACTTCTGGAGAGCTGAGAATCAGTGGATTGAAGAAAACAGACAGTGGAGTTTATTCTGTGGAGTTCAACAGCAAACTGCTTAACAAGACATATACATTATCTGTTATCAAGGCAGTCCCCAAACCCACAATCACTTCTTCCTGTAACCCAGACAAAACctcctgcactctgacctgtgaGGTTGACACCACTGATGCTGAACCAGTCACCTACAgctggaaagagggagagggggcgtGGGAGGACTTAGACAAACAGCTTAATATCAATAAGAGTGACACTGGCAAATCAACCAAGTACATCTGCAAAATGAAAAACCCTGTTAGTGAAGAAGTCAGTGATCCAATTGGACAGGTGTTTGATCCAGAGGCAGTCCCTAAACCCACAATCACTTATACCTGCAACACAGACAAAATCTGCATTCTGACCTGTGAGGGCGACACCACTGATGCTGAACCCGTCACCTACAGCTGGAAAGTGGGGGAGGGGGCGTGGGAGGTCATAGGAAAACAGCTGATTGTCTCTAAGAGCGACACTGGCAAATCAACCAACAGTTACAAGTACATCTGCAAGCTGAAGAACTCTGTTAGTGGGGAAGTCAGTGAGCCAGTTGGAGAGGTGTTTGGTCCAGagCCTTCTGAAGTCGGTGGTGGTGGGATTGTTGGTGTTGTCGTCATTATCATTGTAGCCATTGTAGCGCTTGTTGCCATTGTCATAACAATTTGGTTGGTGTGGAAGAAGAAAAAGGAATATCCCCAAGACACCTGGATTGACTTTTTGAGAAAGtattgtggtggaatgtgtgGGGTTCCGTTAACGCCCAACACCAAAACGGGGGAAGATGGCGCAGACAAAGCTGGAAGGGGGCAGGGGAATGAAGATGCCACTCCATTGAAGTAGAAAGACCACCAGTAAAGAATCCAGTATTTTAGGATGCTGGCGGTCGGTCTTGCTTGTGGGGTAACTGAGGACCAGAAACATGGGGTTTGAAGGCTCTCAGTACATGACTCCTTATGTTACATTGAGACAAACGACCAA
>XM_036952004.1
ATATAAAATTCACAGAACAAGAAAACGTTACTTTATTTTCAACTAAGCGGTCACGACGCATGCAGAGGGAAGAACTAAACCACATTTCACTTTCACAGCCTTGGGAAATTAAGATCAGAAGTAGGCTAGCTAACTAGCGCATATGCCTAAACTAACGCTCATCAGATTGTGTTTCTGGCTTTGTCTGGTGCGAACGGTGGTCTCCCGAGATGATCTTTATCATGAAGTGGGAGGGAAGCTCGTGTTGAAACCAGACAAGTCCACAGTGACTGACCCCATCACAAGCATCCTATGGAAGCATGGGAAGAACAAGGTGGCAGAGTGGGACAAGGATTTTGGTGGTCTGGATATCTATGCTGCCTTCAAAGAGCGTACAACCCTGGACCAGACTTCTGGAGAGCTGAGAATCAGTGGATTGAAGAAAACAGACAGTGGAGTTTATTCTGTGGAGTTCAACAGCAAACTGCTTAACAAGACATATACATTATCTGTTATCAAGGCAGTCCCCAAACCCACAATCACTTCTTCCTGTAACCCAGACAAAACctcctgcactctgacctgtgaGGTTGACACCACTGATGCTGAACCAGTCACCTACAgctggaaagagggagagggggcgtGGGAGGACTTAGACAAACAGCTTAATATCAATAAGAGTGACACTGGCAAATCAACCAAGTACATCTGCAAAATGAAAAACCCTGTTAGTGAAGAAGTCAGTGATCCAATTGGACAGGTGTTTGATCCAGAGGCAGTCCCTAAACCCACAATCACTTATACCTGCAACACAGACAAAATCTGCATTCTGACCTGTGAGGGCGACACCACTGATGCTGAACCCGTCACCTACAGCTGGAAAGTGGGGGAGGGGGCGTGGGAGGTCATAGGAAAACAGCTGATTGTCTCTAAGAGCGACACTGGCAAATCAACCAACAGTTACAAGTACATCTGCAAGCTGAAGAACTCTGTTAGTGGGGAAGTCAGTGAGCCAGTTGGAGAGGTGTTTGGTCCAGTTTGGTTGGTGTGGAAGAAGAAAAAGGAATATCCCCAAGACACCTGGATTGACTTTTTGAGAAAGtattgtggtggaatgtgtgGGGTTCCGTTAACGCCCAACACCAAAACGGGGGAAGATGGCGCAGACAAAGCTGGAAGGGGGCAGGGGAATGAAGATGCCACTCCATTGAAGTAGAAAGACCACCAGTAAAGAATCCAGTATTTTAGGATGCTGGCGGTCGGTCTTGCTTGTGGGGTAACTGAGGACCAGAAACATGGGGTTTGAAGGCTCTCAGTACATGACTCCTTATGTTACATTGAGACAAACGACCAA

Function

NR:

description
pregnancy-specific beta-1-glycoprotein 2-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952005.1 False 1162 mRNA 0.46 5 16135076 16164464
XM_021571008.2 False 1426 mRNA 0.47 10 16146044 16164464
XM_036952004.1 True 1336 mRNA 0.47 9 16146044 16164464

Neighbor

gene id symbol gene type direction distance location
LOC110495663 NA coding downstream 8949 16118101 ~ 16126127 (-)
LOC110495656 NA coding downstream 110698 16022467 ~ 16024382 (-)
LOC110497061 LOC106574727 coding downstream 119216 15996966 ~ 16015860 (-)
LOC110495653 LOC106574394 coding downstream 206303 15877503 ~ 15928773 (-)
LOC110497059 donson coding downstream 261118 15869734 ~ 15873958 (-)
LOC110495664 NA coding upstream 4781 16169245 ~ 16171657 (-)
LOC110495661 NA coding upstream 16746 16181210 ~ 16210360 (-)
LOC118941105 NA coding upstream 56730 16221194 ~ 16224343 (-)
LOC118941103 NA coding upstream 63578 16228042 ~ 16236785 (-)
LOC118941104 LOC106575549 coding upstream 80596 16245060 ~ 16258999 (-)
G1521550 NA non-coding downstream 44774 16088233 ~ 16090302 (-)
G1521584 LOC106575572 non-coding downstream 80056 16054745 ~ 16055020 (-)
G1521583 NA non-coding downstream 80665 16054019 ~ 16054411 (-)
G1521582 NA non-coding downstream 82835 16046943 ~ 16052241 (-)
G1521575 NA non-coding downstream 97636 16037073 ~ 16037440 (-)
G1521683 NA non-coding upstream 170431 16334895 ~ 16335197 (-)
G1521692 NA non-coding upstream 180588 16345052 ~ 16345240 (-)
G1521691 NA non-coding upstream 181634 16346098 ~ 16346458 (-)
G1521695 NA non-coding upstream 189750 16354214 ~ 16354733 (-)
G1521546 LOC100380633 other downstream 50110 16055128 ~ 16084966 (-)
G1521563 LOC106575575 other downstream 139759 15994964 ~ 15995317 (-)
G1521387 NA other downstream 375842 15685901 ~ 15815957 (-)
G1521712 NA other upstream 253786 16418250 ~ 16418918 (-)
LOC110495686 LOC106574627 other upstream 773188 16915423 ~ 16946521 (-)
LOC118941063 LOC106574632 other upstream 844918 17009382 ~ 17011759 (-)
G1522794 NA other upstream 1277195 17441659 ~ 17450178 (-)
LOC110528763 LOC106575486 other upstream 1477954 17640874 ~ 17671930 (-)

Expression


Co-expression Network