LOC110495661


Basic Information

Item Value
gene id LOC110495661
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 16181210 ~ 16210360 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037385.1
GAACTAAAATCCACATTTTACTTTCACTTTCACAGCCTCGGTAGGCAAGGCTATGAACCACATAGTGTTTTAGCATATCTCATTTGAACTTACTTTTATTTACTATAGAAATAAACGAACGAACTAACAAAGATGTCCAAACTTAAGCTTATCCGATTGTGCTTCTGGTTTTATCTGGTGCGAACGGTGGTCTCCGAAGGTGATCTTTATCTTAAAGTGGGAGGTGAGCTCGTGTTGACGCCGGACAAGTCCACAGTGCCTGACTCCATCATAAGCATCATATGGAAGCATGGGAAGAACAAGGTGGCAGAGTGGGACAAGGATTTTGGTGGTCTGGATATCTATGGTGCCTTCAAAAACCACACAACCCTGGACAATACTACTGGAGAGCTGAGAATCAGTGGATTGGAGAAAACAGACAGTGGAGTTTATTCTGTGGAGTTCAACAGCAAACTGCTTCACAAGACATATACATTATCTGTTATCAAGGCAGTCCCCAAACCCACCATCACTTCTTCCTGTAACCCAGACAAAACctcctgcactctgacctgtgaGGGTGACACCACTGATGCTGAACCAGTCACCTACAgctgggaagagggagagagggtgtccAAGGTCTTAGACAAACAGCTAAGTGTCTCTGAATCAACCAATGGAATCAAGTACACCTGCAAGCTGAGTAATGCTGTTAGTTCGAATGTCAGTGAGCCAGTTGGAGAGGTGTTTGGTCCAGAGCATTCCAGTATCGGTGCTGTTGTTGCTTTGGTTGTCGTTGCCATTGTAGCGTTTGCTGTCATAATAGGATTTTTGGTGTGGAAGAAAAAGACAGAATATCCCCAAGACACCTGGATCGACTTTTTGAGAATGTATTGTGGTGGAATTTATGGTAGAATTTGTGCTAAAGGCACCGATGGAGTCCAGCCAGAACAAGGGAAAAGCAATGCAGATAAAGCTGAAAAGGGGCAGGGGGATGAAGATCTTTATCTTAAAGTGGGAGGTGAGCTCGTGTTGACGCCGGACAAGTCCACAGTGCCTGACTCCATCACAAGCGTCCTATGGAAGCATGAGAAGAGCTACGTGGCAGAGTGGGAAAATGAATTTGATCGTCTGACCATCTATGGTGTCTTCAAAGGCCGCACAACCCTGAACCAGACTACTGGAGAGCTGAGAATCAGTGGCTTGAAGAAAACAGACAGTGGAGTTTATTCTGTGGAGTTCAACAGAAAACTTCTTGATAAGACATATAAAATATCTGTTAGCAGGGGCGATGATGAGACTACAATGAATGGCAGCGCTGCACCAGGGGGCGACCTTGACGCCACTGAAAAAGGAGAGGCAAATGGAGAGGGGTCCGTGCTGCTGAAAGAAGACACGGTGAAGTACGACAATGGAAAGGGGGAAACAGAAGAGAATTCAACATTGTAGGACGGACGCCAGGGAACTGTGGACCAGAGGCACCGTCTCATCTTGACCACCAGCACTGGACGACATGGGTGACCCTCTGAGATGCCACTCCATTGAAGTAGAAAGACCACCAGTAAAGAATCCAGTATTTTAGGATGCTAGTGGTCTTCCTGGTGGGGTAACTGAGGACCAGAAACATGGGGTTTGAAGGCTCTCAGTACATGACTCCATATCTGTTACATTGAGACAAATGACCAAGAAGAGAGAAACATGTTTGAACTGTTGGAGATGTTTTTAATGAAATGTACATTTAAAATGAAGGAAAACAACAGGCGAACGTTGCACAAAGTAACATGCATTCAATCAGATGAAGTACAGTGAGCTACAAAAGTATTGGCACCGACATCTTtagctgttttggctctgtactccagcactttagatttaaaattatacaatgactataAAGTTAAAGTACAGACTGACAGCTTtgatttgagggtattttcatccatatcagttgagccgtttagaaattacagcacttttgtacatagtccccccattttaggggacctaa
>XM_036952006.1
ACTAAAATCCACATTTTACTTTCACTTTCACAGCCTCGGTAGGCAAGGCTATGAACCACATAGTGTTTTAGCATATCTCATTTGAACTTACTTTTATTTACTATAGAAATAAACGAACGAACTAACAAAGATGTCCAAACTTAAGCTTATCCGATTGTGCTTCTGGTTTTATCTGGTGCGAACGGTGGTCTCCGAAGATCTTTATCTTAAAGTGGGAGGTGAGCTCGTGTTGACGCCGGACAAGTCCACAGTGCCTGACTCCATCATAAGCATCATATGGAAGCATGGGAAGAACAAGGTGGCAGAGTGGGACAAGGATTTTGGTGGTCTGGATATCTATGGTGCCTTCAAAAACCACACAACCCTGGACAATACTACTGGAGAGCTGAGAATCAGTGGATTGGAGAAAACAGACAGTGGAGTTTATTCTGTGGAGTTCAACAGCAAACTGCTTCACAAGACATATACATTATCTGTTATCAAGGCAGTCCCCAAACCCACCATCACTTCTTCCTGTAACCCAGACAAAACctcctgcactctgacctgtgaGGGTGACACCACTGATGCTGAACCAGTCACCTACAgctgggaagagggagagagggtgtccAAGGTCTTAGACAAACAGCTAAGTGTCTCTGAATCAACCAATGGAATCAAGTACACCTGCAAGCTGAGTAATGCTGTTAGTTCGAATGTCAGTGAGCCAGTTGGAGAGGTGTTTGGTCCAGAGCATTCCAGTATCGGTGCTGTTGTTGCTTTGGTTGTCGTTGCCATTGTAGCGTTTGCTGTCATAATAGGATTTTTGGTGTGGAAGAAAAAGACAGAATATCCCCAAGACACCTGGATCGACTTTTTGAGAATGTATTGTGGTGGAATTTATGGTAGAATTTGTGCTAAAGGCACCGATGGAGTCCAGCCAGAACAAGGGAAAAGCAATGCAGATAAAGCTGAAAAGGGGCAGGGGGATGAAGATCTTTATCTTAAAGTGGGAGGTGAGCTCGTGTTGACGCCGGACAAGTCCACAGTGCCTGACTCCATCACAAGCGTCCTATGGAAGCATGAGAAGAGCTACGTGGCAGAGTGGGAAAATGAATTTGATCGTCTGACCATCTATGGTGTCTTCAAAGGCCGCACAACCCTGAACCAGACTACTGGAGAGCTGAGAATCAGTGGCTTGAAGAAAACAGACAGTGGAGTTTATTCTGTGGAGTTCAACAGAAAACTTCTTGATAAGACATATAAAATATCTGTTAGCAGGGGCGATGATGAGACTACAATGAATGGCAGCGCTGCACCAGGGGGCGACCTTGACGCCACTGAAAAAGGAGAGGCAAATGGAGAGGGGTCCGTGCTGCTGAAAGAAGACACGGTGAAGTACGACAATGGAAAGGGGGAAACAGAAGAGAATTCAACATTGTAGGACGGACGCCAGGGAACTGTGGACCAGAGGCACCGTCTCATCTTGACCACCAGCACTGGACGACATGGGTGACCCTCTGAGGTTGCGTTTTTTGTGGATTTATCCTTTTTTGGGAAAGATCTGAATTTTATCATTATTGAGAATCTAAAGATTTAAAGGAACTGAATCTctttttgactttttttttttttgaaaaaaaaaatcacctttatttaaccatataggcta
>XM_036952007.1
AGGAACTAAAATCCACATTTTACTTTCACTTTCACAGCCTCGGTAGGCAAGGCTATGAACCACATAGTGTTTTAGCATATCTCATTTGAACTTACTTTTATTTACTATAGAAATAAACGAACGAACTAACAAAGATGTCCAAACTTAAGCTTATCCGATTGTGCTTCTGGTTTTATCTGGTGCGAACGGTGGTCTCCGAAGGTGATCTTTATCTTAAAGTGGGAGGTGAGCTCGTGTTGACGCCGGACAAGTCCACAGTGCCTGACTCCATCATAAGCATCATATGGAAGCATGGGAAGAACAAGGTGGCAGAGTGGGACAAGGATTTTGGTGGTCTGGATATCTATGGTGCCTTCAAAAACCACACAACCCTGGACAATACTACTGGAGAGCTGAGAATCAGTGGATTGGAGAAAACAGACAGTGGAGTTTATTCTGTGGAGTTCAACAGCAAACTGCTTCACAAGACATATACATTATCTGTTATCAAGGCAGTCCCCAAACCCACCATCACTTCTTCCTGTAACCCAGACAAAACctcctgcactctgacctgtgaGGGTGACACCACTGATGCTGAACCAGTCACCTACAgctgggaagagggagagagggtgtccAAGGTCTTAGACAAACAGCTAAGTGTCTCTGAATCAACCAATGGAATCAAGTACACCTGCAAGCTGAGTAATGCTGTTAGTTCGAATGTCAGTGAGCCAGTTGGAGAGGTGTTTGGTCCAGAGCATTCCAGTATCGGTGCTGTTGTTGCTTTGGTTGTCGTTGCCATTGTAGCGTTTGCTGTCATAATAGGATTTTTGGTGTGGAAGAAAAAGACAGAATATCCCCAAGACACCTGGATCGACTTTTTGAGAATGTATTGTGGTGGAATTTATGGTAGAATTTGTGCTAAAGGCACCGATGGAGTCCAGCCAGAACAAGATAAAGCTGAAAAGGGGCAGGGGGATGAAGATCTTTATCTTAAAGTGGGAGGTGAGCTCGTGTTGACGCCGGACAAGTCCACAGTGCCTGACTCCATCACAAGCGTCCTATGGAAGCATGAGAAGAGCTACGTGGCAGAGTGGGAAAATGAATTTGATCGTCTGACCATCTATGGTGTCTTCAAAGGCCGCACAACCCTGAACCAGACTACTGGAGAGCTGAGAATCAGTGGCTTGAAGAAAACAGACAGTGGAGTTTATTCTGTGGAGTTCAACAGAAAACTTCTTGATAAGACATATAAAATATCTGTTAGCAGGGGCGATGATGAGACTACAATGAATGGCAGCGCTGCACCAGGGGGCGACCTTGACGCCACTGAAAAAGGAGAGGCAAATGGAGAGGGGTCCGTGCTGCTGAAAGAAGACACGGTGAAGTACGACAATGGAAAGGGGGAAACAGAAGAGAATTCAACATTGTAGGACGGACGCCAGGGAACTGTGGACCAGAGGCACCGTCTCATCTTGACCACCAGCACTGGACGACATGGGTGACCCTCTGAGGTTGCGTTTTTTGTGGATTTATCCTTTTTTGGGAAAGATCTGAATTTTATCATTATTGAGAATCTAAAGATTTAAAGGAACTGAATCTctttttgactttttttttttttgaaaaaaaaaatcacctttatttaaccatataggcta

Function

NR:

description
uncharacterized protein LOC110495661 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037385.1 False 1990 mRNA 0.45 14 16181210 16210358
XM_036952006.1 False 1654 mRNA 0.44 12 16188873 16210356
XM_036952007.1 True 1646 mRNA 0.45 12 16188873 16210360

Neighbor

gene id symbol gene type direction distance location
LOC110495664 NA coding downstream 9553 16169245 ~ 16171657 (-)
LOC110495662 LOC106575549 coding downstream 16746 16135076 ~ 16164464 (-)
LOC110495663 NA coding downstream 55083 16118101 ~ 16126127 (-)
LOC110495656 NA coding downstream 156832 16022467 ~ 16024382 (-)
LOC110497061 LOC106574727 coding downstream 165350 15996966 ~ 16015860 (-)
LOC118941105 NA coding upstream 10834 16221194 ~ 16224343 (-)
LOC118941103 NA coding upstream 17682 16228042 ~ 16236785 (-)
LOC118941104 LOC106575549 coding upstream 34700 16245060 ~ 16258999 (-)
LOC110495665 NA coding upstream 52365 16262725 ~ 16267362 (-)
LOC110497063 LOC106575501 coding upstream 137176 16347536 ~ 16352967 (-)
G1521550 NA non-coding downstream 90908 16088233 ~ 16090302 (-)
G1521584 LOC106575572 non-coding downstream 126190 16054745 ~ 16055020 (-)
G1521583 NA non-coding downstream 126799 16054019 ~ 16054411 (-)
G1521582 NA non-coding downstream 128969 16046943 ~ 16052241 (-)
G1521575 NA non-coding downstream 143770 16037073 ~ 16037440 (-)
G1521683 NA non-coding upstream 124535 16334895 ~ 16335197 (-)
G1521692 NA non-coding upstream 134692 16345052 ~ 16345240 (-)
G1521691 NA non-coding upstream 135738 16346098 ~ 16346458 (-)
G1521695 NA non-coding upstream 143854 16354214 ~ 16354733 (-)
G1521546 LOC100380633 other downstream 96244 16055128 ~ 16084966 (-)
G1521563 LOC106575575 other downstream 185893 15994964 ~ 15995317 (-)
LOC110497059 donson other downstream 308744 15869734 ~ 15873958 (-)
G1521387 NA other downstream 421976 15685901 ~ 15815957 (-)
G1521712 NA other upstream 207890 16418250 ~ 16418918 (-)
LOC110495686 LOC106574627 other upstream 727292 16915423 ~ 16946521 (-)
LOC118941063 LOC106574632 other upstream 799022 17009382 ~ 17011759 (-)
G1522794 NA other upstream 1231299 17441659 ~ 17450178 (-)
LOC110528763 LOC106575486 other upstream 1432058 17640874 ~ 17671930 (-)

Expression


Co-expression Network