LOC110495674 (LOC106575504)


Basic Information

Item Value
gene id LOC110495674
gene name LOC106575504
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 16454118 ~ 16468453 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571041.2
CCATAGGTCCTCCTCCCCCAATTGACAGGATTCCGTGGCTCCTCCTTGACGAGATTATCCCATCGCGGTGTATCACGTCTGGCCAGCCACCCTTCGGCAAAACAGCAGTACGTTTTCTCTTTTCCCACCGGAGCTTCAAGTGCAGGACTAGCTAAACATCCCGAACACAGACAGCCATGGCAGAAAACGCCGACTTGGATAACCACCGAATTAAGAGCTTCAAAAACAAGGGGCGCGATGTCGAGACTATGCGAAGACATCGCAATGAAGTGACAGTGGAGCTGAGAAAGaacaaaCGAGATGAGCACCTTCTGAAGAAGAGGAACGTTCCACAGGAGGAGAGCCTGGAAGACTCAGACATAGACTCTGACTTCAAAGGGCAAAATGTAACACTGGAAGCCATCTTACAGAATGCTGTCAGTGACAACGGACTCATCCAGCTCAGTGCCGTGCAGGCAGCCAGAAAACTCCTGTCCAGTGACAGAAACCCCCCCATCGACGACTTGATTAAGTCTGGCATCCTGCCCATCCTGGTCAAATGCCTGGAGAGGGACGACAAtccctctctccagtTTGAGGCTGCCTGGGCGTTGACCAACATAGCATCAGGGACGTCACAACAGACTCAAGCTGTTGTCAAATCTAATGCTGTGCCTCTATTTCTGCGGCTGCTACAATCTCCTCACCAGAACGTATGTGAACAGGCCGTGTGGGCGCTAGGCAACATCATCGGCGATGGACCGCAGTGCAGGGATTACGTAATCTCCCTGGGCGTGGTCAAGCCCCTGCTGTCATTTATTAACCCCTCCATCCCCATCACCTTCCTCCGCAACGTCACCTGGGTCATCGTCAACCTCTGCCGCAACAAGGACCCACCGCCCCCCATGGAGACAGTACAGGAGATTCTACCTGCTCTCTGTGTATTGATATACCACACTGATATAAATATCCTAGTGGATACAGTGTGGGCCTTGTCCTATCTCACAGATGGAGGGAACGAACAGATCCAGATGGTCATCGACTCGGGGGTTGTCCCCTTCCTCGTCCCCCTGCTCAGCCATCAAGAGGTCAAAGTTCAGACTGCAGCTCTGAGGGCAGTGGGTAACATTGTGACGGGGACAGACGAGCAGACGCAGGTGGTGCTCAACTGTGACGTCCTCTCGCACTTCCCCAACCTGCTCACACACCCCAAGGAGAAGATCAACAAGGAGGCCGTGTGGTTCCTGTCCAACATCACAGCAGGCAACCAGCAGCAGGTGCAGGCCGTCATCGACGCTGGCCTGCTGCCCATGATCATCCACCAGCTGGCTAAGGGAGACTTTGGTACACAGAAGGAGGCAGCCTGGGCCATCAGCAACTTGACAATAAGTGGAAGAAAAGATCAGGTGGAGTACCTGGTGCAGCAGAATGTGGTTCCTCCGTTCTGCAGCCTGCTGTCTGTGAAGGACTCCCAGGTGGTTCAGGTGGTCCTAGACGGCCTCAAGAACGTCCTCATCATGGCCGGGGAAGAGGCCAGCACCATCGCTGAGATCATAGAGGAGTGTGGAGGTCTAGAGAAGATCGAGAACCTTCAGCAGCATGAAAACGAGGACATCTACAAACTAGCCTTCGAGATCATCGACCAGTACTTCTCAGGAGATGATattgatgaggatccCAGTTTGATCCCCGAAGCCACTCAGGGCGGAACCTTCAACTTTGACCCCGCCACCAACCTGCAAGCAAAGGAGTTCAAGTTTTAAAGGCAAACGTCCACCTAGTAGGTCTAACTCTAGCTGCTCTGAACCCTCCAGTCACCTCCTTCCCAACATCAATCACTGACTCACTAACAACAACAGTTCAAGCACTGAAGGAAGGATCATTGTTATCCATCTCTTTTCAAGCATCTCACAGCGATGCTTATAAATGTTCCAGAAAGAGAAAACGCCTCGTCCGTCATTCCTGCAGTTGCCAAAAAGTTGCTATTATCCTCTTACTCagacacgttcacacacacatacaccctgaAGAGACTGAAGTCATCTGTGTGCATGGACCAATGATCTTGTTCCACCAATCGTCATATCAGCAAAGAAGAGGAATGGTCTCATTTAAAGGCGTGCTCTTCTCTGGAGTCTGGGATCAGAGCACGTTGGACACAGCGACTGAAGACACTCAACCTCCGAGTTAATTGACTCTTGAGGAGTACGGACAGCATCTAGGCTGTCCTTTGTTAAACATTCTAATTGATGACCTCATCAAAGGGCTGTTAATTATTCAGTCCTCATTGAACTACAGTTTTTTTTGGAACAGAACACTGAGAATGAATGCTCTCAAACCCCTTCTCAGAGGGTAGAGAAGTGAGCAGTCGACATATTCCCATGTGGACTGAACAGACTTCAACAACCACCTATCACTATAATAATATTCCTTTTAGTTGTGAAATCATCATGGAAAACAATGGATTTAaagtacaaaaaatatatatttaaaattatGCAACAGGGAAATTCTGAAATTAATAACAAGGAAGACTTTGTAGCATTGATCTATGGATGGCTTGCTGGTGGAATGGTTTTTGGGTTGAGAGGAGGGGAATGGAGTTGAGCTGGAACCAAACACACCTCTCCTCAGAACCTTTAAACTGGGTTTTGGATCAGTCCCTCTTACCAGGTTCTATCCTCTGAACGAGAAACCCCTCAACAACGAATAAGCCTTAAAAACCAGGCTTCAACTGGGCGTTAACAAAAGACACATCTCCTCTTGCCGGGGAGACATATCGTCGGACATTGAATTTAATGACTCAATAATTTGAGGAAATATTTTGGAAAGATATATCggtagagggacagagaaagacaaTGTAACACTGATTTAATCTGTGTAGATTCCACATCTGCAGTTTCTATTCAGTCTTATGCACACTTCAGTCACCCCTCCCTCTGCTTACTGTGTGTGGAAAGCAATGTTTGCTTCGATAAGTCAAAGCTATGGTTGCATTGCAATGGTCCATTGACCATACAGTTGTTCTATATGCTACATCTAATTCTACAATTTAAGAGTATTTCCCCAACTGTCTGAAGTTTGGTCTGTACAAAGCAGCTGCATTTTGCCAGTCATCCATCGATCGGTTCACTTTGCGAGGCTGTAATGTTTTTACTGTTGAAAGATGAACAGGGAAGTTTTGTTTTTAAACGTGTAACGTGATCGATGACTTGATTGAAAATTCTCTTGTGAACTGGACTTGTGTGTGATTTCCCGCCAGCATTTATTTGTGAAGGGACCGGAAAAAAACAAATTACATTTGGACTAATGTAGTTATGTTTTGGCTGCTAACTACTGAGAAGGCATGGGGATTATTTCAGGGGAGCGGCCCACGCCTTTTTGGACTAGCCATTCACAACCGATGAACAAAGTCTAGCTGGTGTACAGTCATTGATCTAGATTCTAGAGACATAGAATGAGAGCCACTTTAAAGAATGGAATTTTTTGTCTTGTATCAAACTGATACAAGCTTATGCTTTTGGGCAAGATTTTTACTTGCTAACGAAACATGTATTAAATACGAAAAAGCAACAGATAGCATTTTGGCCTCTGTCTtactttttatacattttagaatccaTATCTCTTTAAGGTGGCTCAATGTTCCTTTCAACTCTTGTGCATATTAAAGAAAATGAGTTGAAATCCA
>XM_021571040.2
ATAGGTCCTCCTCCCCCAATTGACAGGATTCCGTGGCTCCTCCTTGACGAGATTATCCCATCGCGGTGTATCACGTCTGGCCAGCCACCCTTCGGCAAAACAGCAGTACGTTTTCTCTTTTCCCACCGGAGCTTCAAGTGCAGGACTAGCTAAACATCCCGAACACAGACAGCCATGGCAGAAAACGCCGACTTGGATAACCACCGAATTAAGAGCTTCAAAAACAAGGGGCGCGATGTCGAGACTATGCGAAGACATCGCAATGAAGTGACAGTGGAGCTGAGAAAGaacaaaCGAGATGAGCACCTTCTGAAGAAGAGGAACGTTCCACAGGAGGAGAGCCTGGAAGACTCAGACATAGACTCTGACTTCAAAGGGCAAAATGTAACACTGGAAGCCATCTTACAGAATGCTGTCAGTGACAACGGACTCATCCAGCTCAGTGCCGTGCAGGCAGCCAGAAAACTCCTGTCCAGTGACAGAAACCCCCCCATCGACGACTTGATTAAGTCTGGCATCCTGCCCATCCTGGTCAAATGCCTGGAGAGGGACGACAAtccctctctccagtTTGAGGCTGCCTGGGCGTTGACCAACATAGCATCAGGGACGTCACAACAGACTCAAGCTGTTGTCAAATCTAGTCCAGATGCTGTGCCTCTATTTCTGCGGCTGCTACAATCTCCTCACCAGAACGTATGTGAACAGGCCGTGTGGGCGCTAGGCAACATCATCGGCGATGGACCGCAGTGCAGGGATTACGTAATCTCCCTGGGCGTGGTCAAGCCCCTGCTGTCATTTATTAACCCCTCCATCCCCATCACCTTCCTCCGCAACGTCACCTGGGTCATCGTCAACCTCTGCCGCAACAAGGACCCACCGCCCCCCATGGAGACAGTACAGGAGATTCTACCTGCTCTCTGTGTATTGATATACCACACTGATATAAATATCCTAGTGGATACAGTGTGGGCCTTGTCCTATCTCACAGATGGAGGGAACGAACAGATCCAGATGGTCATCGACTCGGGGGTTGTCCCCTTCCTCGTCCCCCTGCTCAGCCATCAAGAGGTCAAAGTTCAGACTGCAGCTCTGAGGGCAGTGGGTAACATTGTGACGGGGACAGACGAGCAGACGCAGGTGGTGCTCAACTGTGACGTCCTCTCGCACTTCCCCAACCTGCTCACACACCCCAAGGAGAAGATCAACAAGGAGGCCGTGTGGTTCCTGTCCAACATCACAGCAGGCAACCAGCAGCAGGTGCAGGCCGTCATCGACGCTGGCCTGCTGCCCATGATCATCCACCAGCTGGCTAAGGGAGACTTTGGTACACAGAAGGAGGCAGCCTGGGCCATCAGCAACTTGACAATAAGTGGAAGAAAAGATCAGGTGGAGTACCTGGTGCAGCAGAATGTGGTTCCTCCGTTCTGCAGCCTGCTGTCTGTGAAGGACTCCCAGGTGGTTCAGGTGGTCCTAGACGGCCTCAAGAACGTCCTCATCATGGCCGGGGAAGAGGCCAGCACCATCGCTGAGATCATAGAGGAGTGTGGAGGTCTAGAGAAGATCGAGAACCTTCAGCAGCATGAAAACGAGGACATCTACAAACTAGCCTTCGAGATCATCGACCAGTACTTCTCAGGAGATGATattgatgaggatccCAGTTTGATCCCCGAAGCCACTCAGGGCGGAACCTTCAACTTTGACCCCGCCACCAACCTGCAAGCAAAGGAGTTCAAGTTTTAAAGGCAAACGTCCACCTAGTAGGTCTAACTCTAGCTGCTCTGAACCCTCCAGTCACCTCCTTCCCAACATCAATCACTGACTCACTAACAACAACAGTTCAAGCACTGAAGGAAGGATCATTGTTATCCATCTCTTTTCAAGCATCTCACAGCGATGCTTATAAATGTTCCAGAAAGAGAAAACGCCTCGTCCGTCATTCCTGCAGTTGCCAAAAAGTTGCTATTATCCTCTTACTCagacacgttcacacacacatacaccctgaAGAGACTGAAGTCATCTGTGTGCATGGACCAATGATCTTGTTCCACCAATCGTCATATCAGCAAAGAAGAGGAATGGTCTCATTTAAAGGCGTGCTCTTCTCTGGAGTCTGGGATCAGAGCACGTTGGACACAGCGACTGAAGACACTCAACCTCCGAGTTAATTGACTCTTGAGGAGTACGGACAGCATCTAGGCTGTCCTTTGTTAAACATTCTAATTGATGACCTCATCAAAGGGCTGTTAATTATTCAGTCCTCATTGAACTACAGTTTTTTTTGGAACAGAACACTGAGAATGAATGCTCTCAAACCCCTTCTCAGAGGGTAGAGAAGTGAGCAGTCGACATATTCCCATGTGGACTGAACAGACTTCAACAACCACCTATCACTATAATAATATTCCTTTTAGTTGTGAAATCATCATGGAAAACAATGGATTTAaagtacaaaaaatatatatttaaaattatGCAACAGGGAAATTCTGAAATTAATAACAAGGAAGACTTTGTAGCATTGATCTATGGATGGCTTGCTGGTGGAATGGTTTTTGGGTTGAGAGGAGGGGAATGGAGTTGAGCTGGAACCAAACACACCTCTCCTCAGAACCTTTAAACTGGGTTTTGGATCAGTCCCTCTTACCAGGTTCTATCCTCTGAACGAGAAACCCCTCAACAACGAATAAGCCTTAAAAACCAGGCTTCAACTGGGCGTTAACAAAAGACACATCTCCTCTTGCCGGGGAGACATATCGTCGGACATTGAATTTAATGACTCAATAATTTGAGGAAATATTTTGGAAAGATATATCggtagagggacagagaaagacaaTGTAACACTGATTTAATCTGTGTAGATTCCACATCTGCAGTTTCTATTCAGTCTTATGCACACTTCAGTCACCCCTCCCTCTGCTTACTGTGTGTGGAAAGCAATGTTTGCTTCGATAAGTCAAAGCTATGGTTGCATTGCAATGGTCCATTGACCATACAGTTGTTCTATATGCTACATCTAATTCTACAATTTAAGAGTATTTCCCCAACTGTCTGAAGTTTGGTCTGTACAAAGCAGCTGCATTTTGCCAGTCATCCATCGATCGGTTCACTTTGCGAGGCTGTAATGTTTTTACTGTTGAAAGATGAACAGGGAAGTTTTGTTTTTAAACGTGTAACGTGATCGATGACTTGATTGAAAATTCTCTTGTGAACTGGACTTGTGTGTGATTTCCCGCCAGCATTTATTTGTGAAGGGACCGGAAAAAAACAAATTACATTTGGACTAATGTAGTTATGTTTTGGCTGCTAACTACTGAGAAGGCATGGGGATTATTTCAGGGGAGCGGCCCACGCCTTTTTGGACTAGCCATTCACAACCGATGAACAAAGTCTAGCTGGTGTACAGTCATTGATCTAGATTCTAGAGACATAGAATGAGAGCCACTTTAAAGAATGGAATTTTTTGTCTTGTATCAAACTGATACAAGCTTATGCTTTTGGGCAAGATTTTTACTTGCTAACGAAACATGTATTAAATACGAAAAAGCAACAGATAGCATTTTGGCCTCTGTCTtactttttatacattttagaatccaTATCTCTTTAAGGTGGCTCAATGTTCCTTTCAACTCTTGTGCATATTAAAGAAAATGAGTTGAAATCCA
>TU1741359
ACAGAAGGAGGCAGCCTGGGCCATCAGCAACTTGACAATAAGTGGAAGAAAAGATCAGGTGGAGTACCTGGTGCAGCAGAATGTGGTTCCTCCGTTCTGCAGCCTGCTGTCTGTGAAGGACTCCCAGGTGGTTCAGGTGGTCCTAGACGGCCTCAAGAACGTCCTCATCATGGCCGGGGAAGAGGCCAGCACCATCGCTGAGATCATAGAGGAGTGTGGAGGTCTAGAGAAGATCGAGAACCTTCAGCAGCATGAAAACGAGGACATCTACAAACTAGCCTTCGAGATCATCGACCAGTACTTCTCAGGAGATGATattgatgaggatccCAGTTTGATCCCCGAAGCCACTCAGGGCGGAACCTTCAACTTTGACCCCGCCACCAACCTGCAAGCAAAGGAGTTCAAGTTTTAAAGGCAAACGTCCACCTAGTAGGTCTAACTCTAGCTGCTCTGAACCCTCCAGTCACCTCCTTCCCAACATCAATCACTGACTCACTAACAACAACAGTTCAAGCACTGAAGGAAGGATCATTGTTATCCATCTCTTTTCAAGCATCTCACAGCGATGCTTATAAATGTTCCAGAAAGAGAAAACGCCTCGTCCGTCATTCCTGCAGTTGCCAAAAAGTTGCTATTATCCTCTTACTCagacacgttcacacacacatacaccctgaAGAGACTGAAGTCATCTGTGTGCATGGACCAATGATCTTGTTCCACCAATCGTCATATCAGCAAAGAAGAGGAATGGTCTCATTTAAAGGCGTGCTCTTCTCTGGAGTCTGGGATCAGAGCACGTTGGACACAGCGACTGAAGACACTCAACCTCCGAGTTAATTGACTCTTGAGGAGTACGGACAGCATCTAGGCTGTCCTTTGTTAAACATTCTAATTGATGACCTCATCAAAGGGCTGTTAATTATTCAGTCCTCATTGAACTACAGTTTTTTTTGGAACAGAACACTGAGAATGAATGCTCTCAAACCCCTTCTCAGAGGGTAGAGAAGTGAGCAGTCGACATATTCCCATGTGGACTGAACAGACTTCAACAACCACCTATCACTATAATAATATTCCTTTTAGTTGTGAAATCATCATGGAAAACAATGGATTTAaagtacaaaaaatatatatttaaaattatGCAACAGGGAAATTCTGAAATTAATAACAAGGAAGACTTTGTAGCATTGATCTATGGATGGCTTGCTGGTGGAATGGTTTTTGGGTTGAGAGGAGGGGAATGGAGTTGAGCTGGAACCAAACACACCTCTCCTCAGAACCTTTAAACTGGGTTTTGGATCAGTCCCTCTTACCAGGTTCTATCCTCTGAACGAGAAACCCCTCAACAACGAATAAGCCTTAAAAACCAGGCTTCAACTGGGCGTTAACAAAAGACACATCTCCTCTTGCCGGGGAGACATATCGTCGGACATTGAATTTAATGACTCAATAATTTGAGGAAATATTTTGGAAAGATATATCggtagagggacagagaaagacaaTGTAACACTGATTTAATCTGTGTAGATTCCACATCTGCAGTTTCTATTCAGTCTTATGCACACTTCAGTCACCCCTCCCTCTGCTTACTGTGTGTGGAAAGCAATGTTTGCTTCGATAAGTCAAAGCTATGGTTGCATTGCAATGGTCCATTGACCATACAGTTGTTCTATATGCTACATCTAATTCTACAATTTAAGAGTATTTCCCCAACTGTCTGAAGTTTGGTCTGTACAAAGCAGCTGCATTTTGCCAGTCATCCATCGATCGGTTCACTTTGCGAGGCTGTAATGTTTTTACTGTTGAAAGATGAACAGGGAAGTTTTGTTTTTAAACGTGTAACGTGATCGATGACTTGATTGAAAATTCTCTTGTGAACTGGACTTGTGTGTGATTTCCCGCCAGCATTTATTTGTGAAGGGACCGGAAAAAAACAAATTACATTTGGACTAATGTAGTTATGTTTTGGCTGCTAACTACTGAGAAGGCATGGGGATTATTTCAGGGGAGCGGCCCACGCCTTTTTGGACTAGCCATTCACAACCGATGAACAAAGTCTAGCTGGTGTACAGTCATTGATCTAGATTCTAGAGACATAGAATGAGAGCCACTTTAAAGAATGGAATTTTTTGTCTTGTATCAAACTGATACAAGCTTATGCTTTTGGGCAAGATTTTTACTTGCTAACGAAACATGTATTAAATACGAAAAAGCAACAGATAGCATTTTGGCCTCTGTCTtactttttatacattttagaatccaTATCTCTTTAAGGTGGCTCAATGTTCCTTTCAACTCTTG

Function

NR:

description
importin subunit alpha-4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571041.2 False 3673 mRNA 0.47 16 16454118 16468453
XM_021571040.2 False 3677 mRNA 0.47 16 16454120 16468453
TU1741359 True 2316 TUCP 0.43 4 16465513 16468423

Neighbor

gene id symbol gene type direction distance location
LOC110495673 NA coding upstream 22765 16427597 ~ 16431410 (+)
gucy1b2 LOC106575503 coding upstream 26580 16422245 ~ 16427538 (+)
LOC110495670 tgds coding upstream 86236 16352833 ~ 16367882 (+)
LOC110495668 LOC106575499 coding upstream 108357 16338325 ~ 16345761 (+)
LOC110497062 LOC106575548 coding upstream 121896 16288881 ~ 16332222 (+)
LOC110495678 LOC106575507 coding downstream 2651 16471104 ~ 16474100 (+)
LOC110495675 LOC106575507 coding downstream 8019 16476472 ~ 16486304 (+)
LOC110495676 LOC106575553 coding downstream 18400 16486853 ~ 16496136 (+)
LOC110495683 LOC106575518 coding downstream 145196 16613649 ~ 16685491 (+)
LOC110497065 LOC106574631 coding downstream 504630 16973083 ~ 16984148 (+)
G1520973 NA non-coding upstream 14725 16438959 ~ 16439393 (+)
G1520968 NA non-coding upstream 22189 16431721 ~ 16431929 (+)
G1520964 NA non-coding upstream 41543 16412220 ~ 16412575 (+)
G1521008 NA non-coding downstream 47653 16516106 ~ 16516354 (+)
G1521026 NA non-coding downstream 71375 16539828 ~ 16540341 (+)
G1521053 NA non-coding downstream 115212 16583665 ~ 16583951 (+)
G1521054 NA non-coding downstream 115696 16584149 ~ 16586203 (+)
G1521065 tubgcp3 non-coding downstream 131773 16600226 ~ 16600714 (+)
G1520748 NA other upstream 515300 15938230 ~ 15938818 (+)
G1520742 NA other upstream 531219 15919157 ~ 15922899 (+)
G1520649 NA other upstream 638113 15756493 ~ 15816005 (+)
LOC110495644 LOC106575583 other upstream 654237 15796262 ~ 15801788 (+)
LOC110495440 LOC106575601 other upstream 1237874 15207355 ~ 15251952 (+)
LOC110527374 LOC106592210 other downstream 1155363 17623786 ~ 17631132 (+)
G1522415 LOC106575491 other downstream 1297766 17766219 ~ 17766694 (+)
G1522437 LOC106575479 other downstream 1371216 17839669 ~ 17844014 (+)
G1522438 NA other downstream 1387688 17856141 ~ 17860614 (+)
G1522684 NA other downstream 1910634 18379087 ~ 18380258 (+)

Expression


Co-expression Network