LOC110495676 (LOC106575553)


Basic Information

Item Value
gene id LOC110495676
gene name LOC106575553
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 16486853 ~ 16496136 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571045.2
AAGACAAGCTCCGCCTATTCGTTCCATGTCAGAAGATATAGGAAGAAGCCTAGCTTCGCTGTTCAGAAACATACAGCATCAAATCATCATACGTATTTGCCTTGACTGGTGACGTTTGCTACATTttacattcaattgattgaatgGCAACGACGGATACTGTACAGTCGAACCAATATTTGAAACCAACCTGTGCTGCTTCATGCAACTGTAAAGGATATCGCGATGTAAGGGAAGCCAACACACAAACCGACACCAAAGTACAAGATCATGGACCCAGGCTGTCCAAGTTTAACCTCTTCACCCTGCTGAGTTTATGGATGGAACTTTTCCCCAAGGAGGAACCAGAAGACATAAACCAGAATGACTTTACGCGGGGTACAGGCCTGGTGGTGGTTCGGGACCAGAGGGTGGTGGGTCTCCACTGCTCCGGTCCAGAGCTCCACGTGGGGCAGGTAGCTGTGATCAGACACGGGCCCAGGCTGGCTGCCTCAGACCTCTACTTCTCTAGGAGACCCTGCGCTACCTGCCTCAAGATGCTTATCAATGCTGGGGTGAGCCGCATCTCCTTCTGGCCTGGTGACCCTGAGATGAGTCTGCTAGCGGTCAGGCCTAATGGGACGGACTCCATTTCCCAGGAGGCCATGTGGGACGCAATTGCGTCCGAGAAGCTGAAGTCCAACAGCCGGCCCCACATTAGTGTGGTGGTGCAGCCCGTGGCCCCTGGCCTGCAGCAGTTTGTGGAGGAGACCTCCAGGGGGTGTGACTTCATGGAGAGGGTGTCGGGGGACGACCCCGAATTGGACGCTGGGGACTTCTACAGGAAGCAGAGGAGACGGAACCTGGACACTTTCTCCGAAGAGTTCCTAATCCCACACGAACAGTGCCACCGTGACATTCTCACCAAAATAGGTCTGGAGAACTTCTCCACGGAGCCGTACTTCTCCAACCTGCGTCAGAACATGAGGGAGCTGGTCGGGGTTCTGGCCTCAGTAGCTGCTAGTGTGCCTCTTCTccagcatggattctacaagaAGGACTCCCAGCCTGCAACCTCAGAGCAGCCCCAGCCTCAGGGGGTGTCCCAGGAGATTGCCAGACACTGCATCGTACAGGCCAGACTGTTGGCCTACAGAACAGAGGACCCTAAGGTTGGGGTTGGTGCTGTCATTTGGGCAGAAGGGAAATCAGGTGGTTGTGATGGCACGGGGCGGCTGTACCTGGTGGGTTGTGGGTACAACGCCTACCCAGTGGGCTCAGAGTACGGACAGTACCCCCAGATGGACACCAAACAGCAGGACCGCCAGAGGAGGAAGTACCGCTACATCATCCACGCTGAGCAGAACGCACTCACCTTCAGGAGTGAAGAGATCCGTGAGGAGGAGAACACCATGCTGTTTGTGACTAAGTGTCCGTGTGATGAGTGTGTCCCTCTGATCCGAGGAGCTGGGATCAAGCAGATCTACACCACTGACCTGGACAGCGGCAAAGACAAGGGAGACATCTCCTACCTCAGATTCCACGGCCTCCAAGGAGTCCTGAAGTTAATTTGGCAGAAGTCCTCTCTAGCCAGGAGAGACGCTGAACATGCTGGTCTTCATCTAGCCAatggatgtgtggggAAGCATGGGAGACAGCCTGAACAGGCCCTTCAATCCAACAAGAGGTTACGGTCGGCAACAAATCCAGACCTTTCTCCTGTTTGTTGAACAATGGTACCTGTAGCTTTCAGTCTGGTTTCACCAGGCTATGGTCCCCAGGCTCTTGTTGGCATTGGAAACGTTTAATTTATCCAATCGCATATTGATCAGTGATTCAAGTAAGGAAGGATGCAttttaacttcttggcgcacccatcccgttagcgggatcattttcgtcaacatccgctcaattgcagagcgccaaattcaaattaaattacaaaaaatataaaatgttcatgaaatcacaagtgcaatatagcaaaacacagcttagcttgttgttaatccacctggcatgtcagatttcaaaaagctttacggcaaaagctatccaagcgtttatgttaggacatctctctctcagcagaaaaaacattacaaacagctagcagcaaagtagattggtcacaaaagtcaaaaaacaataaaatgaatcacttacctttgatcttcggatgtttgcactcaggAAACTccaagttacacaataaatgttccaataaagattatttttatatccaaaatacctccatttggttggcgcgttttgttcagaaatccacaggctcgagcggtcacgatggggcagacgaaaattccaaatagtatctgtaaagtttgtagaaacatgtcaaacgttttttttaatcaagccttgtttttacaataaataatcaatatttcaaccggatcatagctttttcaataggagagagagaaagtctgctccaagctgctccAAGATGTGATCCTTCTCGATactttttcagaataaaagcctgaaactatgtataaagactgttcacaccatgtggaagccatagggaaaggaatctggttgatatctctttaaatggagggaaggcatgcaatggaactgggagatttgtttctcttcggcacttccttgttggattttcctcaggttttcgcctgcaatatcagttctgttatactcagacaatatttagacagttttggaaacttgagtgtttatcctaatctgacaattatatgcatattctgggcctgagaaataggcagtttcatttgggtacgtttttcatccaaacatcaaaatactgccccctacactcaacaggttaacatTGTTGGAAATTCAAAGGCCTCTTCATACTCCCCTGTAATGGACAGTTTCAAGGAGTGACTGTATATTCAAAGGAAATGGTACTaggtagatttttttttaattgcaaaGCTTGTATGTATAAGTGAACTGTAAATGCGTGTTTCCTAATTGTTTGTCTGAAGAGTTTACAATGAAAGTTGTATGAAGGCTATTGTTGATTGTAGCTTTAAGTTTACTATAGTTCTTCCAGACTTGAAGAATATAAGTCACATTCCAGCCAGTGCAGGCTACCACCACTATATTGCACTTTGCCTCAAAGGATACTAACTCCTAGACCCCTGCAACTGTGCTTTGTCTGTTTCTTTGTTACATGGTTGGCTCCTACATCCTTGAATTGTTTCATCCTGTTTTGCCAAACTGCTTTTAACTGATAACAATAAGCAtctaacaacaaaaaatatatataaaatgacaAACCAGGAAAACAATGTATGCATTTATTTTATTGGTGTTGTGGTACAGTAGTATCAAtgggattaaaaataataataattccatgGTTGAAAAGGGTCAATATTACTTTAGTACAGTATGTTAATAAGTAAACCTGTTTTGGCTCAGGTATAAGTTCCTACTGATACAGCCTGAATCTAAGTCTCTTGTTTATCATTTTAATCCAACATCAGTTTGCCATTCAAaaccctgtttatacctggtgtTAATGTGGGTCCTGTGTCTTGATCTTGTCCATATTCTGATTATGACCATTTCTAGACCTGTGTAGAATATTACAATTATTGATGGTGATTCTTCCTGACTACCTCCAGAGGCCATCGAGGACTAATTGTATCTTTATTTTACAAGTGTAAACAGATCTGGATTGTCAAACCATTAATAGTCCTTCATTGATTCAAGGGATCTTAACATTGGGAATCTCATAATTTGAATACAGGGAGGGACTAGGGTTCAAAATATACCTTTTGAGAAAGGTCATTGGCATGGCAAGACTTGAACCTGTGACCTTGTGGTCCTAGCCCACAGCACCAGCAGGGAGGGCACCATTATTGTTTTTGTACATTTTATAAAGCTGTTCATTCCTTTTGTCATTTTAGAATGTCAGATAACATTTAAGTAGGTTGGAAAACAAAAGCTGCATTGGGATGCAAGCCGTTTAACACCCTCCCACAAGCAGTCCACCTCCCTGAAACACTTGTCTTTACTTGTAAACTCCACCCACTGACATGTTACTAAGCTCTGCCCACGGAACTTTCATCGAACCAATCAATTTGTCCCCGGCTACCTCgaggtggtcaggaagatctGTTCACATGTTAGCACCAGATATAGAACAGGGCTAGAATGACTGAGTTTCACCAAAACGACAAGGGCATTGAGGACACTATCCCTTGTGTGTCAAGTCCAATCtagaaatgtttttttaaaaatgtaaaagtaTTTGGCAATTTAAAGAACAATCACTTGTCCCATGGCATGGTGCCCATCACATTTATTATTCAATATTACATTGAAGAGCCATATTAGTTCATATTTTCAATTTAGATGTGATCGTAACTTAAGCTCAACCACCACAATTAAAATATGCATTGGCTCAATTTGTCTGAGGTTATTTAATTTAGAGTTCCCCCAAAACAAgctacatg

Function

NR:

description
cytidine and dCMP deaminase domain-containing protein 1-like

GO:

id name namespace
GO:0003824 catalytic activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571045.2 True 4457 mRNA 0.44 10 16486853 16496136

Neighbor

gene id symbol gene type direction distance location
LOC110495675 LOC106575507 coding upstream 549 16476472 ~ 16486304 (+)
LOC110495678 LOC106575507 coding upstream 12753 16471104 ~ 16474100 (+)
LOC110495674 LOC106575504 coding upstream 18400 16454118 ~ 16468453 (+)
LOC110495673 NA coding upstream 55500 16427597 ~ 16431410 (+)
gucy1b2 LOC106575503 coding upstream 59315 16422245 ~ 16427538 (+)
LOC110495683 LOC106575518 coding downstream 117513 16613649 ~ 16685491 (+)
LOC110497065 LOC106574631 coding downstream 476947 16973083 ~ 16984148 (+)
LOC110495688 LOC106574622 coding downstream 491604 16987740 ~ 17001956 (+)
LOC110495691 LOC106574621 coding downstream 508893 17005029 ~ 17009539 (+)
LOC110495692 tm182 coding downstream 569741 17065877 ~ 17069278 (+)
G1520973 NA non-coding upstream 47460 16438959 ~ 16439393 (+)
G1520968 NA non-coding upstream 54924 16431721 ~ 16431929 (+)
G1520964 NA non-coding upstream 74278 16412220 ~ 16412575 (+)
LOC110495668 LOC106575499 non-coding upstream 143919 16338325 ~ 16345761 (+)
G1521008 NA non-coding downstream 19970 16516106 ~ 16516354 (+)
G1521026 NA non-coding downstream 43692 16539828 ~ 16540341 (+)
G1521053 NA non-coding downstream 87529 16583665 ~ 16583951 (+)
G1521054 NA non-coding downstream 88013 16584149 ~ 16586203 (+)
G1521065 tubgcp3 non-coding downstream 104090 16600226 ~ 16600714 (+)
G1520748 NA other upstream 548035 15938230 ~ 15938818 (+)
G1520742 NA other upstream 563954 15919157 ~ 15922899 (+)
G1520649 NA other upstream 670848 15756493 ~ 15816005 (+)
LOC110527374 LOC106592210 other downstream 1127680 17623786 ~ 17631132 (+)
G1522415 LOC106575491 other downstream 1270083 17766219 ~ 17766694 (+)
G1522437 LOC106575479 other downstream 1343533 17839669 ~ 17844014 (+)
G1522438 NA other downstream 1360005 17856141 ~ 17860614 (+)
G1522684 NA other downstream 1882951 18379087 ~ 18380258 (+)

Expression


Co-expression Network