LOC110495677 (LOC106575510)


Basic Information

Item Value
gene id LOC110495677
gene name LOC106575510
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 16494961 ~ 16516009 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571047.2
CGCCTATCCCGGGACTGTGGCTCATAACGAATCAGACCAAATGGAATTCTGCACTGCCTTCTTAAAAGATTCCGTACATTTTAATTCGCACATACACATATTCCTCTGACGTTTTGCCCAGCATACAACACACCGCTGGCGTGACCAGAAAAAGCTGCTCGGTTACATTGAGAATCGAGACAGCAGCAAAGACATCcgagagaaaaaaatacaaaatagacTCTTGCACCgCTGTCAGAAGAGACCCGAGGAGAGGCCCAGCCACCATGCCGCTGTTCGGTAAATCCCACAAGAATCCCGCCGACATTGTCCGGACTCTGAAGGAGAACATGGCCATCCTGGTCAAACAAGACAAGAAAACAGATAAGGCATCAGAGGAGGTGTCTAAGTGTCTTGTGGCCATGAAGGAGATACTATATGGGACCGGTGACAAGGAGCCTCACACAGAGACGGTGGCCCAGTTGGCCCAGGAGCTCTACAACAGCGGCCTGCTCATCTCCCTGGTGGAAAACCTGCAGGTCATCGACTTTGAGGGGAAGAAGGACGTGTGTCAGATCTTCAACAACATCCTGCGGAGGCAGATCGGCACCCGCAGCCCCACTGTCGAGTACTTCTGCTCTCACCAAGAGGTGCTATTTGTGCTGCAAAAAGGGTATGAGACCCCTGGGTCTGCGCTGAACTGTGGCATCATGCTGAGGGAGTGTATCAGACACGAGCCACTGGCCAAGCTGGTTCTCCACTCAGAACACTTCCAGCACTTCTTCAATTACGTAGAGATGGAGACCTTCGACATCGCCTCAGACGCTTTCGCCACCTTCAAGGACCTGCTCACAAGACACAAGGTCCTGGTAGCTGAATATCTAGAACAAAATTATGATGCCATCTTTGACCAGTATGAGAAGTTATTACACTCTGATAACTATGTGACAAAGAGACAGTCATTAAAGttGTTGGGAGAGCTTCTGTTGGACAGGCATAACTTCACAGTGATGACCCGGTACATCAGCAAGCCTGAGAACCTGAAGCTGATGATGAACCTACTGAGGGACAAGAGCCCTAACATACAATTTGAGGCCTTCCACGTCTTCAAGGTGTTTGTGGCGAACCCCAACAAGACACAGCCCATCATAGACATCCTGCTGAAGAACCAGCCCAAACTCATCGACTTCCTTAGCAACTTCCAGAAGGACCGCATGGACGACGAGCAATTCAACGACGAGAAGACCTACCTAATCAAACAGATCCGAGACCTAAAGAAACCCGCCTCTTAAAACCTTACCCCCATTCGTCCCCAAAACCCTTCCCCTTAGCTATGACCTTTACCCTAACCTTTACTTTTTATTGTCGACAAAAATACATTGACAATAATGATTCAATTTCTTAATATCAAAGACATTCTTTTTCTTGGTTCCTTAAACTTTGCTGAGAATAGTTCTTAATCACagattttttttcattgtttttacTTTTAAATGAATCCTTTTCTTATTAGTGTGTAGTGTTCCACAACGGGAAGGGGATTTCCTCTCTTGGGGGGAACCAATGCTTAGAGACCTTTAGGTGATTGGCTGAGTGAGCTGTGGAGACCACTGGTCATCACTTTAATTGcgcaaatatttttttgaaaatgttCTCTTTTCATTGCCACTTGCAGGCACGAGCCAGCTAGATAGTTCTGACTTCTTTCTAATACTCTCCTAATCTAACCACAGTACAACTGAAGTATCCAGAATCATAGGAATTGCTATTTCTCTATTAGAGGATCGAAATGGTCTTCTCAAATGTTCCATAGAACTCCTCTTCAGACTCACATTCCCTGCTAGTCTTACTCCTGTGGTTGTACTTCCACTATTTACACTTAAGTTATGTTTCAACACTGTAGTAGGTCCTCTGACATGACAACTCTACATTTGACCTTACAAGGAACATATTAGATGTCTGGTGATCAGCAGGGCCATTCTTCTACTGCTAACCTTCGTATAGAATATGACTTATCAATAGTTTTGATAATTGATTCTCCATGGATGGCTGGTAGCACTTTCAATATCATTCAACGCTAAAGGAGTGATTCCTTTTTGGTTTATTTTAAGCTGATGAAGTAGAATCCTGTTGAACAGGAAACTATCTTGATGATTAAAAAACAAGTTTGTCTTGTGTATAAAAGATGGTTTTAACCCATAAGTGAGTGCCATTGCGGGTGACAGAAAAATCCTCTGATTTTTTTTCTGTACGAAAGTGATTTCTTTGAACTTGTTTTCTTATTTAGATGGAGGGGGATGGTTGGTGGAACACATTAACAGTAGGGGGTACATGCAGAAGTGCCTTTatgtttttccttttttttgtattttaaataCCTTTTTCTGGGCGGAGCTTAATTCTTATTTAGAAAAATATGGTCTGGTTGAATATATTAGTTGTGATTAAGCAATGAACCTTGAACTCACTATATTTGAGTTGTGCAGTTGAAATAGTATTTTACTTTATGAGAACTTGTTGCAGTTCATTGATCACATCATAAAACTAGGAACCAGGAGGCCAAAACTCAGGACTGATTGTCCAGGAAAGTTAACATGCCAGTAAACTGGATATGGTAGAAGCATCTTGCtctgaatttttttttacatgtagcTTGTTTTGGGGGAACTCTAAATTAAATAACCTCAGACAAATTGAGCCAATGCATATTTTAATTGTGGTGGTTGAGCTTAAGTTACGATCACATCTAAATTGAAAATATGAACTAATATGGCTCTTCAATGTAATATTGAATAATAAATGTGATGGGCACCATGCCATGGGACAAGTGATTGTTCTTTAAATTGCCAAAtacttttacatttttaaaaaaacatttctaGATTGGACTTGACACACAAGGGATAGTGTCCTCAATGCCCTTGTCGTTTTGGTGAAACTCAGTCATTCTAGCCCTGTTCTATATCTGGTGCTAACATGTGAACagatcttcctgaccacctcGAGGTAGCCGGGGACAAATTGATTGGTTCGATGAAAGTTCCGTGGGCAGAGCTTAGTAACATGTCAGTGGGTGGAGTTTACAAGTAAAGACAAGTGTTTCAGGGAGGTGGACTGCTTGTGGGAGGGTGTTAAACGGCTTGCATCCCAATGCAGCTTTTGTTTTCCAACCTACTTAAATGTTATCTGACATTCTAAAATGACAAAAGGAATGAACAGCTTTATAAAATGTACAAAAACAATAATGGTGCCCTCCCTGCTGGTGCTGTGGGCTAGGACCACAAGGTCACAGGTTCAAGTCTTGCCATGCCAATGACCTTTCTCAAAAGGTATATTTTGAACCCTAGTCCCTCCCTGTATTCAAATTATGAGATTCCCAATGTTAAGATCCCTTGAATCAATGAAGGACTATTAATGGTTTGACAATCCAGATCTGTTTACACTTGTAAAATAAAGATACAATTAGTCCTCGATGGCCTCTGGAGGTAGTCAGGAAGAATCACCATCAATAATTGTAATATTCTACACAGGTCTAGAAATGGTCATAATCAGAATATGGACAAGATCAAGACACAGGACCCACATTAacaccaggtataaacagggttTTGAATGGCAAACTGATGTTGGATTAAAATGATAAACAAGAGACTTAGATTCAGGCTGTATCAGTAGGAACTTATACCTGAGCCAAAACAGGTTTACTTATTAACATACTGTACTAAAGTAATATTGACCCTTTTCAACcatggaattattattatttttaatcccaTTGATACTACTGTACCACAACACCAATAAAATAAATGCATACATTG

Function

NR:

description
calcium-binding protein 39-like

GO: NA

KEGG:

id description
K08272 CAB39, MO25; calcium binding protein 39

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571047.2 True 3800 mRNA 0.41 9 16494961 16516009

Neighbor

gene id symbol gene type direction distance location
LOC110495679 LOC106575508 coding downstream 18709 16473995 ~ 16476252 (-)
LOC110495671 LOC105019845 coding downstream 83452 16386046 ~ 16411509 (-)
LOC110495669 LOC106575500 coding downstream 111640 16368547 ~ 16383321 (-)
LOC110497063 LOC106575501 coding downstream 141994 16347536 ~ 16352967 (-)
LOC110495665 NA coding downstream 227599 16262725 ~ 16267362 (-)
LOC110495681 LOC106575511 coding upstream 658 16516667 ~ 16584000 (-)
LOC110495682 tubgcp3 coding upstream 69774 16584154 ~ 16610837 (-)
LOC110495684 LOC106574593 coding upstream 216316 16732325 ~ 16735884 (-)
LOC110495686 LOC106574627 coding upstream 399414 16915423 ~ 16946521 (-)
LOC110495685 eif5b coding upstream 431758 16947767 ~ 16969915 (-)
G1521763 NA non-coding downstream 8699 16484896 ~ 16486262 (-)
G1521757 NA non-coding downstream 15176 16479143 ~ 16479785 (-)
G1521740 NA non-coding downstream 45491 16449240 ~ 16449470 (-)
G1521738 NA non-coding downstream 47386 16447372 ~ 16447575 (-)
G1521725 NA non-coding downstream 63653 16431106 ~ 16431308 (-)
G1521810 NA non-coding upstream 48289 16564298 ~ 16564796 (-)
G1521827 NA non-coding upstream 95012 16611021 ~ 16611238 (-)
G1521858 NA non-coding upstream 139112 16655121 ~ 16656216 (-)
G1521871 LOC106575518 non-coding upstream 164766 16680775 ~ 16683073 (-)
G1521712 NA other downstream 76043 16418250 ~ 16418918 (-)
G1521546 LOC100380633 other downstream 409995 16055128 ~ 16084966 (-)
LOC110495656 NA other downstream 470579 16022467 ~ 16024382 (-)
G1521563 LOC106575575 other downstream 499644 15994964 ~ 15995317 (-)
LOC110497059 donson other downstream 622495 15869734 ~ 15873958 (-)
LOC118941063 LOC106574632 other upstream 493373 17009382 ~ 17011759 (-)
G1522794 NA other upstream 925650 17441659 ~ 17450178 (-)
LOC110528763 LOC106575486 other upstream 1126409 17640874 ~ 17671930 (-)
LOC118941106 LOC106575483 other upstream 1171921 17685551 ~ 17702827 (-)

Expression


Co-expression Network