LOC110495684 (LOC106574593)


Basic Information

Item Value
gene id LOC110495684
gene name LOC106574593
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 16732325 ~ 16735884 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571062.2
CTCCTATGTCACCTGACCGCGAGACTGCATGCAAATCACGCCTTTCCTAAAGCGCCATTGGCCACCACCACCTCATTTAGTCGCTGTCAACGCGCATCATATGGGTAAGCTCGGTAACTTTACGACTATAGGCACAGAAAGTAGCTCAAAGAGACGCTTTTCATCGAGCTGGATGTGGAAAAAACAAGAGGAGAAAACGACTAATACAGAGAAGGAAGGAAAAGTTTATCGAAGTACCTTTAATTTTGGATTGTATTTCTTCgttccatttttttatttatttttttccggGAGGGTTGATTTGCGCAAGTGACGGTGTGTGCCAGCAGTGTGGAGGTGCCGTGACTGAATGTTTCCGTGTATTGGTTGAAAAAGTTAACGCCAGGTGAATGTATAGTATGATGATGGAGACTGACCTACACTCCCCAGTGCCCCAAACGAACACGAATTCGGGGCACACGGGAGGATCAAGCAATGGGAACAAAGTCAACCAAGACCGCGTAAAGAGACCGATGAATGCCTTCATGGTTTGGTCCCGGGGCCAGCGGCGGAAGATGGCTCAGGAGAACCCCAAAATGCACAACTCCGAGATCAGCAAGCGGCTCGGCGCCGAGTGGAAGGTGATGTCCGAGGCGGAGAAGAGACCCTTCATCGACGAGGCGAAGCGGCTACGAGCTATGCACATGAAGGAGCATCCGGATTATAAATACAGACCGAGACGGAAGACCAAGACACTGTTAAAAAAGGACAAATACTCTTTGGCCGGTGGGCTGCTTACCGGGACAGGGGGTGGGGGTGTCGGTCTAGGGATGAGCCCTGGGGTCGGACAGAGGTTAGACAGTCCCGGGGGTCACGTTGGTGCGTCTGCTGCCAGCTACGCGCACATGAATGGCTGGGCGAACGGTGCGTACTCGGGGCAGGTGGCTGCAGCTGCGGCGGCCGCGGCCATGATGCAGGAGGCTCAGCTCGCCTACAGCCAGCACCCGGGCAGCgggcaccaccaccactcacaccaccaccacccgcaCAACCCCCAGCCCATGCACCGCTACGACATGTcggccctccagtacagccccatCTCGAACTCTCAAAGCTACATGAACGCCTCTCCATCCGGCTACGGCGGGATCACCTACACGCAGCACCAGAGCTCTGGTGTCGCCTCGTCCGGGTCGATGGGCACACTGGGCTCTCTGGTGAAATCGGAACCGAGTGTGAGCCCTCCCGTCTCTACTCACTCGCGCGCCCCGTGTCCCGGGGACTTGAGGGACATGATAAGCATGTATTTACCGACGGGGGAAGCTGCAGGTGACCCGTCCGTTCAAAGTAGACTTCACGCGCTGCCGCAGCACTACCAGAGCTCCACGACAGGGTACCTAAAGAAAAGGACGACGTTGTGGTAGTCGCGAGGAAGGGAACAAGACAGGCTCGAGTCACAACACCTGTTGACTTGGCTAATGTCTCGTGGGAGGAACTTCGTCTCGTTCGACTAATGTTTTGATTTTCTTTTTTTGAACGGGCTTCTTTTGATTATCTGTCCGGTCACATATTTTTTGGACCAACAGGAAGACGCTCACGCCATCGGTCAACACTAGTTAGGCCTACTGATGACAGAATCACCCCTTTTAAAATAAGTTATTTGACTGTCTGTTTTTGATCTTCTAATATCCCATATAATTTGCCTAATAATGTAAACTTAATTGTGGACCAATTGTGATGATTTGACATGTGCGTTCTGGTTATTTGTTGATCATTGCAATATAACTATGAACCATTTTTTTCACATTCCCTTTTTCATGTTTGCCATTATACTCATACGTTAACTATATTTCAGTCATTTCCACATCTCGTAATGTGCGTAAAGATTTTATTTTTCATGGACATAATTATCATTTTCAAGAAAGTAGAAAAATACCTGTATTGGTCTACAATAATCTCATAAACTATAATATTCAAATGAGGGAATAAACGAAATGAGGGAATATTCTCTGCTCTcattttatttcattcatttacATTGAACTTTCAGAAAGCGTTGTTATTCAAACTTTTCCAGCACTTGCTGCAATTTTGATGGAGATGACAGACACAAACTGGAAGAATCAGTGCGCCAAGATGGAGAAACATAGGCTCAATATCATTAACTAATGGTGCAAATCTGCAATGGCATTATTTTACATCTTGTTTGTAGAGAATTTTCAAACTTGCGTCATATTGACCTTTGATTCCACGTTTCCCCCATGATTTTTGTTCGCGGTCCAATAAAGAAAATT

Function

NR:

description
transcription factor Sox-1a-like

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0051091 positive regulation of DNA-binding transcription factor activity biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09267 SOX1S; transcription factor SOX1/3/14/21 (SOX group B)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571062.2 True 2276 mRNA 0.48 2 16732325 16735884

Neighbor

gene id symbol gene type direction distance location
LOC110495682 tubgcp3 coding downstream 121488 16584154 ~ 16610837 (-)
LOC110495681 LOC106575511 coding downstream 148325 16516667 ~ 16584000 (-)
LOC110495677 LOC106575510 coding downstream 216316 16494961 ~ 16516009 (-)
LOC110495679 LOC106575508 coding downstream 256073 16473995 ~ 16476252 (-)
LOC110495671 LOC105019845 coding downstream 320816 16386046 ~ 16411509 (-)
LOC110495686 LOC106574627 coding upstream 179539 16915423 ~ 16946521 (-)
LOC110495685 eif5b coding upstream 211883 16947767 ~ 16969915 (-)
LOC110495687 LOC106574624 coding upstream 235169 16971053 ~ 16972390 (-)
LOC118941063 LOC106574632 coding upstream 273499 17009382 ~ 17011759 (-)
LOC110495689 LOC106574620 coding upstream 276243 17012127 ~ 17053482 (-)
G1521896 NA non-coding downstream 302 16731697 ~ 16732023 (-)
G1521892 NA non-coding downstream 1980 16730136 ~ 16730345 (-)
G1521891 NA non-coding downstream 2892 16728933 ~ 16729433 (-)
G1521890 NA non-coding downstream 3439 16728489 ~ 16728886 (-)
G1521885 NA non-coding downstream 12590 16719245 ~ 16719735 (-)
G1521909 NA non-coding upstream 25221 16761105 ~ 16762998 (-)
G1521910 NA non-coding upstream 26307 16762191 ~ 16764291 (-)
G1521913 NA non-coding upstream 30265 16766149 ~ 16767550 (-)
G1521915 NA non-coding upstream 31465 16767349 ~ 16782554 (-)
G1521979 LOC100194703 non-coding upstream 176028 16911912 ~ 16912362 (-)
G1521712 NA other downstream 313407 16418250 ~ 16418918 (-)
G1521546 LOC100380633 other downstream 647359 16055128 ~ 16084966 (-)
LOC110495656 NA other downstream 707943 16022467 ~ 16024382 (-)
G1521563 LOC106575575 other downstream 737008 15994964 ~ 15995317 (-)
LOC110497059 donson other downstream 859859 15869734 ~ 15873958 (-)
G1522794 NA other upstream 705775 17441659 ~ 17450178 (-)
LOC110528763 LOC106575486 other upstream 906534 17640874 ~ 17671930 (-)
LOC118941106 LOC106575483 other upstream 952046 17685551 ~ 17702827 (-)

Expression


Co-expression Network