LOC110495691 (LOC106574621)


Basic Information

Item Value
gene id LOC110495691
gene name LOC106574621
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 17005029 ~ 17009539 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571072.2
AAAGCTTGTTTAATTTCGTTTTGACTACAATTCCCAAGATGCAATGTCTAAGCGCCTCTTGGTCACTTACCGGAAGTTTCTACGTGTTCAGTTGTCCGGAAGAGCTATTTTTTACTGAGGAAAAGGAACTTTCTTCTAAAAATAGGAGGTTTAGTAGCACTATGTTACCGACCACCTCGCCGCAGAACGGAAGCCTGAGCGCCCGCGATGCGGCACGCCACACAGCGGGCGCCAAGCGCTACAAATACCTGAGGAGGCTGCTGCACTTCAAAGCCATGGACTTTGAGTTTGCCGTGTGGCAGATGCTCTACCTGTTCACCTCCCCACAGAGAGTCTATCGTAACTTCCACTACAGGAAGCAGACCAAGGACCAGTGGGCCAGAGACGACCCTGCCTTCCTGGTGTTACTCAGCATCTGGCTCTGTGTGTCCACAGTGGGCTTTGGGCTGGTGCTGGACATGGGCTTTGTGGAGACTCTGAAGCTGCTGCTGTGGGTGGTGTTCATAGACTGCATCGGCGTGGGCCTGCTCATCTCCACACTCATGTGGTTCATCACCAATAAGTACCTGCTGAAGCCGCCCAGTAAGGACTATGATGTAGAGTGGGGCTACGCATTCGATGTGCATCTCAATGCCTTCTACCCCCTGCTTGTCATCCTGCACTTCCTACAGCTCTTCTTTATAAACCATATCGTAGTGATAAACTCAGACTGGTTCCTGGGGTACTTTGTAGGGAACAGTCTGTGGCTGACAGCCATCAGCTACTACCTATACATTACATTCCTGGGATACAACGCATTGCCCCAACTGCAGAACACAGTGGTTCTGCTCTACCCCTTCGCCCTGCTAGTtctcctctacatcctctctctctccctgggatgGAACTTCACCAAGGGCCTCTGCTGGTTCTACAAGTACCGCGTCCAGTAGACACTAGTCAGGACCAGAGCCCACAGACAGTCAGGTGGCTCTGAGGACTCATGGACAATGTTTTCATTCTGGAATGTGATTGGATGGGGTGATGCAGTTTTGTATACTTTGTAAATAATACTTTGGCTGTAAGATACAAATTgtggtttgtttttattttttattttaaacatgACGTACTGAAAAGCTTGTTTATTGAAGAGAAAGAAGTAATGAAAAGTGGTGAATTTGTATTTCAATTGGACTAAGGGGCGTTTCTCTGAGTACATTCCTGGGCACTTTCAATAAAGAGGCTTTACTTCA
>XM_021571073.2
GCGCCTCTTGGTCACTTACCGGAAGTTTCTACGTGTTCAGTTGTCCGGAAGAGCTATTTTTTACTGAGGAAAAGGAACTTTCTTCTAAAAATAGGAGGTTTACACTATGTTACCGACCACCTCGCCGCAGAACGGAAGCCTGAGCGCCCGCGATGCGGCACGCCACACAGCGGGCGCCAAGCGCTACAAATACCTGAGGAGGCTGCTGCACTTCAAAGCCATGGACTTTGAGTTTGCCGTGTGGCAGATGCTCTACCTGTTCACCTCCCCACAGAGAGTCTATCGTAACTTCCACTACAGGAAGCAGACCAAGGACCAGTGGGCCAGAGACGACCCTGCCTTCCTGGTGTTACTCAGCATCTGGCTCTGTGTGTCCACAGTGGGCTTTGGGCTGGTGCTGGACATGGGCTTTGTGGAGACTCTGAAGCTGCTGCTGTGGGTGGTGTTCATAGACTGCATCGGCGTGGGCCTGCTCATCTCCACACTCATGTGGTTCATCACCAATAAGTACCTGCTGAAGCCGCCCAGTAAGGACTATGATGTAGAGTGGGGCTACGCATTCGATGTGCATCTCAATGCCTTCTACCCCCTGCTTGTCATCCTGCACTTCCTACAGCTCTTCTTTATAAACCATATCGTAGTGATAAACTCAGACTGGTTCCTGGGGTACTTTGTAGGGAACAGTCTGTGGCTGACAGCCATCAGCTACTACCTATACATTACATTCCTGGGATACAACGCATTGCCCCAACTGCAGAACACAGTGGTTCTGCTCTACCCCTTCGCCCTGCTAGTtctcctctacatcctctctctctccctgggatgGAACTTCACCAAGGGCCTCTGCTGGTTCTACAAGTACCGCGTCCAGTAGACACTAGTCAGGACCAGAGCCCACAGACAGTCAGGTGGCTCTGAGGACTCATGGACAATGTTTTCATTCTGGAATGTGATTGGATGGGGTGATGCAGTTTTGTATACTTTGTAAATAATACTTTGGCTGTAAGATACAAATTgtggtttgtttttattttttattttaaacatgACGTACTGAAAAGCTTGTTTATTGAAGAGAAAGAAGTAATGAAAAGTGGTGAATTTGTATTTCAATTGGACTAAGGGGCGTTTCTCTGAGTACATTCCTGGGCACTTTCAATAAAGAGGCTTTACTTCA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0000139 Golgi membrane cellular_component
GO:0005637 nuclear inner membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003723 RNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571072.2 False 1235 mRNA 0.48 6 17005029 17009539
XM_021571073.2 True 1180 mRNA 0.49 6 17005080 17009539

Neighbor

gene id symbol gene type direction distance location
LOC110495688 LOC106574622 coding upstream 3073 16987740 ~ 17001956 (+)
LOC110497065 LOC106574631 coding upstream 20881 16973083 ~ 16984148 (+)
LOC110495683 LOC106575518 coding upstream 321952 16613649 ~ 16685491 (+)
LOC110495676 LOC106575553 coding upstream 508893 16486853 ~ 16496136 (+)
LOC110495675 LOC106575507 coding upstream 518725 16476472 ~ 16486304 (+)
LOC110495692 tm182 coding downstream 56338 17065877 ~ 17069278 (+)
LOC118941044 NA coding downstream 438899 17448438 ~ 17469192 (+)
LOC110527364 LOC105019822 coding downstream 541715 17551254 ~ 17554607 (+)
mrps9 LOC106574616 coding downstream 582906 17592445 ~ 17610875 (+)
LOC110527370 LOC106575456 coding downstream 601993 17611532 ~ 17620435 (+)
G1521240 NA non-coding upstream 59940 16944726 ~ 16945089 (+)
G1521235 NA non-coding upstream 67772 16935961 ~ 16937257 (+)
G1521234 NA non-coding upstream 69890 16934919 ~ 16935139 (+)
G1521230 LOC106574625 non-coding upstream 72562 16927179 ~ 16932467 (+)
G1522078 NA non-coding downstream 182736 17192275 ~ 17192511 (+)
G1522081 NA non-coding downstream 185464 17195003 ~ 17195262 (+)
G1522091 NA non-coding downstream 194893 17204432 ~ 17204648 (+)
G1522099 NA non-coding downstream 205789 17215328 ~ 17215962 (+)
G1522146 NA non-coding downstream 254513 17264052 ~ 17264563 (+)
LOC110495674 LOC106575504 other upstream 536606 16454118 ~ 16468453 (+)
G1520748 NA other upstream 1066211 15938230 ~ 15938818 (+)
G1520742 NA other upstream 1082130 15919157 ~ 15922899 (+)
G1520649 NA other upstream 1189024 15756493 ~ 15816005 (+)
LOC110527374 LOC106592210 other downstream 614277 17623786 ~ 17631132 (+)
G1522415 LOC106575491 other downstream 756680 17766219 ~ 17766694 (+)
G1522437 LOC106575479 other downstream 830130 17839669 ~ 17844014 (+)
G1522438 NA other downstream 846602 17856141 ~ 17860614 (+)
G1522684 NA other downstream 1369548 18379087 ~ 18380258 (+)

Expression


Co-expression Network