LOC110527374 (LOC106592210)


Basic Information

Item Value
gene id LOC110527374
gene name LOC106592210
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 17623786 ~ 17631132 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608607.2
CATCCGTATATACGTCATAAGAAACGGACGCCGTGTTGTTGATGGTTGAGAAATGTTCAACGTTTTCTGCTTTtgtgtgtagctagctaggttgTTTAACCTTCATTATATTAACGTTATATTGGATCAGAAGACACAATGTCAGAATATTGGAAGTCCCAGCCGAAGAAATTCTGCCAGTACTGCAAATGCTGGATAGCCGATAATAAACCTAGTGTTGAGTTTCATGAACGAGGGAAGAATCACAAAGAAAATGTTGCTGCCAAAATTGCTGAGATGCAAAAGAAGAGCATTGACAAGGCGAAGAAGGAGGATCGTCAGTCTAAAGAGTTTGCAACGATGGAGGCGGCTGCACTGAAAGCTTATGAGGAGGATATGAAAAGGTTGGGGATAAAACCATCAGATTCACCATCTCAAACCAAAGCCCAAACTCCAAGTCCagttccatctccatctccatctcaatctccatctccatctcaatCTCAATCTCGAAAACAAGAAAAGAAGCGAAAGCCTAGAAAGGAGAGGATGCCCAGAAACGAATCAGAGAACTGGGTGGAGGGAAAGACAGGCGAAGGACTCACATATTACTACAACTCTATGACAGGAGAATCTCAGTGGGACAAACCATGTGGGTTGCAGGGAAAGAGCACACCCTCTCCACAGCCGGGTCAAACCGAGATCTCCTTAGTAGGTAGTGCCTGGATGGAGGCCGTCAGTCCTGATGGATTTacatactactacaacacagagacTGGAGAGTCCAGCTGGGAAAGACCTGCAGATCTCCCTGCCGGTGGTGAGTCTGGGCCCGGGCCCAGTGGAGAGACAGTGGGCCCCCCAGGGTTAGATGACTCATCTGCCCTGCAGCCAGAACCCCTCTCTGGGGAGGACAGCTCCAACAGTACCAAAGGAGCCGGGGAGAGAGAGGATTCCAAACAGAATACACCGccttcagacaaggagggggagaaTAAAGATGGTGAGGATGATGACGGGGGGAAGGGAGACGAAGGGGCCAAAGACACACCGGCAGCTGTGcctgaggagaaagaggagaggcctGCTGTTAAGAAGCCCAGAAAGACCAACCCTTACGGAGCCTGGGAGCAGATACAGGAAGTAGAAGAGCCTTATGAGAAAGTGGACCTGCAACTACCACAGGTGGAAGGTGCAGCTAGCGCCCCCGCCCCCACGGAGCTTCCGCCTGAGCCCAAACCCAAGTTTAGGGAGCGTATCATCACCTCTCTGGGCGACGAGGGTGGCCCCGCGTCGGGAGCCGGGGCCACGTTCAGGAAGAGGAAAGCAGAGAACGGGAAATCCTCCAGGAGCCTGAGGCAACGGGGAGATGATGACTAATACTCCGGCTAACTCAGATATGAACTCTTTTTAAACAGACACAAGGCTTGACAAACTGGGGATGTTGTTGGAGACTGTTGTTATTGTGTAAGGGGACAATTCTAGCAACGTCATATCAATACCTGGATATGCAGGTCAGGTTCCTGTGGGCTACAGAGAACTCGAGTTAGCTACTCACCAAGATGCCATCATTTCAGAATTGTTCAGGTTGAATTTTACCCATCCAACCTTCCAAGTTACATCATATCAGCAGCTTTTGGGGTTGAATAGGACAAGCAGATGTCTGAAACAAGCTGGATCAGTGGCTTTAGCTGTCCTAACTTCCAGTGTTTGTCTTACTCTTTACAATTTCCTTTTTCAATGCCTGATGCCCTCCTGCTTTTTCATTTGAGTTGAATAGCGTACAGCCGTGACGGACAGACTATCATTCCCAGAGGTATTTTCTTATGCGTGTGTGATGTACCCCTGTGATGTCCTTACTGTGGTGGTGGTTATTTTCCACATCACCACCAGTACATGCTCATGCCTGGGTCTCCCAAAACCATCGTAGCACTACGGCCATCTTTTGTCTATTTAGTTTCAATGGAATTAACATCCTAGTGCTACGATGCTTTGGGGAGACCCAGACCTTGACCGTACTCCAGCATGGTTGGAGTATGTGAGAAGGAGAATGCAAAGAGAGTTTTCTACAGTATGATTTGATGAAATATTGTACTTGAATATATTCTGCTGGTGTGGA
>TU1742927
CCGTGTTGTTGATGGTTGAGAAATGTTCAACGTTTTCTGCTTTtgtgtgtagctagctaggttgTTTAACCTTCATTATATTAACGTTATATTGGATCAGAAGACACAATGTCAGAATATTGGAAGTCCCAGCCGAAGAAATTCTGCCAGTACTGCAAATGCTGGATAGCCGATAATAAACCTAGTGTTGAGTTTCATGAACGAGGGAAGAATCACAAAGAAAATGTTGCTGCCAAAATTGCTGAGATGCAAAAGAAGAGCATTGACAAGGCGAAGAAGGAGGATCGTCAGTCTAAAGAGTTTGCAACGATGGAGGCGGCTGCACTGAAAGCTTATGAGGAGGATATGAAAAGGTTGGGGATAAAACCATCAGATTCACCATCTCAAACCAAAGCCCAAACTCCAAGTCCagttccatctccatctccatctcaatctccatctccatctcaatCTCAATCTCGAAAACA
>TU1742928
TGATACTCCGGTCCCTCTTCTGTACAGATGCAAAAGAAGAGCATTGACAAGGCGAAGAAGGAGGATCGTCAGTCTAAAGAGTTTGCAACGATGGAGGCGGCTGCACTGAAAGCTTATGAGGAGGATATGAAAAGGTTGGGGATAAAACCATCAGATTCACCATCTCAAACCAAAGCCCAAACTCCAAGTCCagttccatctccatctccatctcaatctccatctccatctcaatCTCAATCTCGAAAACA

Function

NR:

description
WW domain-binding protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608607.2 False 2101 mRNA 0.48 10 17623786 17631132
TU1742927 False 470 TUCP 0.42 5 17623816 17627644
TU1742928 True 251 lncRNA 0.45 2 17627056 17627644

Neighbor

gene id symbol gene type direction distance location
LOC110527370 LOC106575456 coding upstream 3351 17611532 ~ 17620435 (+)
mrps9 LOC106574616 coding upstream 12911 17592445 ~ 17610875 (+)
LOC110527364 LOC105019822 coding upstream 69179 17551254 ~ 17554607 (+)
LOC118941044 NA coding upstream 154594 17448438 ~ 17469192 (+)
LOC110495692 tm182 coding upstream 554508 17065877 ~ 17069278 (+)
LOC110527377 LOC100136320 coding downstream 547 17631679 ~ 17636584 (+)
LOC110527382 LOC106575451 coding downstream 7501 17638633 ~ 17640790 (+)
LOC118936563 LOC106591654 coding downstream 74246 17705378 ~ 17715036 (+)
LOC110519433 NA coding downstream 83905 17715037 ~ 17716919 (+)
LOC110528768 LOC106591671 coding downstream 200318 17831450 ~ 17839017 (+)
G1522364 NA non-coding upstream 1976 17621611 ~ 17621810 (+)
G1522310 NA non-coding upstream 38167 17530402 ~ 17585619 (+)
G1522337 NA non-coding upstream 43559 17579121 ~ 17580227 (+)
G1522336 NA non-coding upstream 45722 17577602 ~ 17578064 (+)
G1522298 NA non-coding upstream 118570 17504937 ~ 17505216 (+)
G1522368 NA non-coding downstream 6839 17637971 ~ 17638173 (+)
G1522372 NA non-coding downstream 11698 17642830 ~ 17644739 (+)
G1522385 NA non-coding downstream 39324 17670456 ~ 17671940 (+)
G1522348 LOC106575485 non-coding downstream 44078 17675210 ~ 17684532 (+)
LOC110495674 LOC106575504 other upstream 1155363 16454118 ~ 16468453 (+)
G1520748 NA other upstream 1684968 15938230 ~ 15938818 (+)
G1520742 NA other upstream 1700887 15919157 ~ 15922899 (+)
G1520649 NA other upstream 1807781 15756493 ~ 15816005 (+)
G1522415 LOC106575491 other downstream 135087 17766219 ~ 17766694 (+)
G1522437 LOC106575479 other downstream 208537 17839669 ~ 17844014 (+)
G1522438 NA other downstream 225009 17856141 ~ 17860614 (+)
G1522684 NA other downstream 747955 18379087 ~ 18380258 (+)
LOC110495728 LOC106574584 other downstream 963202 18594324 ~ 18595682 (+)
LOC110495644 LOC106575583 other upstream 1823935 15796262 ~ 15801788 (+)

Expression


Co-expression Network