LOC110519433


Basic Information

Item Value
gene id LOC110519433
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 17715037 ~ 17716919 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002472840.2
ctgcctcccccttctcccccctactactcccccctccctccccctcctccccccttctactcccccctccctccccctcctcccccagatCTGCTGTTGGACAGttactccccccccctcccccgctcTATGACCCTCCCCCGCCGGCCCACTGTCTCAGCCCACAGCCGCGCTGATCAAGAAGTCTATTACAAGACCATGCAGACGGAGAGGAGATTATAACGCGACATAGAGGAgttataatagacagtaacacTACTAAAAACAGACTACGAGGTCAGAAGAGAACATAGGGGAATTTATAGAGCAAGAGACAGTTGTACCACTAGTTAACCATACAGTCAGGGGCCGTAATTAAATGTGACACCATTTGGGGAGCCCTAACAGTCAGGGGAAGTTATTAAATGTGACACAGTTTGGGGAGACCAAACAGTCAGGAGAACTACTACATGACTTAAATGAGTGAGAGGAGGTTATGAGACGACTTAGGAGTTAAAATGTAATATAATGGAGGTTATAACTTGGCGTAGAGGAGTCACAATGATCCAGAACACTACTTCAATACTGAGAAAGGGTCCAGATGGAAACAGACAAATAGCTGATCTTCAAGACACTGCAGAGTAGGAGAAGGACATGAGATGACTTAAAGAAGTTAAGATATGACATAACAGCAAAACCTACAAGACATTGCAGAGTAAGACTTGGGAGGACTGCTAAGTCAAGGTCTAACAGTGGAGGTGGAGCGTGTCTGACTGAAGGTCTTCAGGAGCATGGAGACTGGATCACTAAAGACAACAGAAACAATAGCAGCTCTAGTAGTTGGTTTACCACCGACTACTATCTGACTAGACTATACAACTATACTGACTATACTCACCagctgtactatactatactatactatactgtatataggatcTCTCTCAGGTTTCCATTCCACTGACTTACTGtagagatgaagaagaggaggggaaaagGAGGAAGGAAAGTGAACATCTTGGAGAGGATTActacagtaaacaaagagggggaGACAAAGACTGGAGGGGACATTTGGCTTAACAACGTGAACagatccacacagacacacatagctGTGGGAAGTCGTTTGGTGGTGGGGGTCCGCGCTACAGACCGCtaacacagtgcactacttttaggaAAATTGAAAATGAAGGATTTTAGATTTTAATTTTAATTCAGATTTTTAGTAGTACCCCTACTACCCGTggcgctacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactaacgcacacacactaacgcacacagacagactcaaCCAATCACCTCCAATTGTATACAATTACATGCAATAATATCAATTATTTTTAAGCTCATGTGTTGCTAATCAAACCCCCACTGACAATACAATAAGATAAATGGTGACTAAAGACTGTATAGACTTGTGGGTGTGGTCTGTGTGCATCGGTTGCCTAGTAGCAGAATGACTTGTTCTGTAGTGGATATCCTCTTTTGATAATAGAACTGTTGAATACTGGTGTTAgtctgcatgtgcatgtgtgtgagggtgtgtctgtcttgcatgtgtgtttctgtgtgtgaatgagtgtattCTACTTCATTGTGTTTCTATGAACTTGCATTATGACTTCTAAGAAACAGAAATGCTGCCTTTTCCAGAGATGTCATTTATTTACCTTTTTGTCTTTATTACCAATGTAAATACTAATATTATATTACTGTCCTTTTTTCATGGGCTACTGTTTTTTTAAACTTGTGTTTCCAGGTAATGGTTATAAACTCCTTGACTAAGG
>TU1742968
CCCACTGTCTCAGCCCACAGCCGCGCTGATCAAGAAGTCTATTACAAGACCATGCAGACGGAGAGGAGATTATAACGCGACATAGAGGAgttataatagacagtaacacTACTAAAAACAGACTACGAGGTCAGAAGAGAACATAGGGGAATTTATAGAGCAAGAGACAGTTGTACCACTAGTTAACCATACAGTCAGGGGCCGTAATTAAATGTGACACCATTTGGGGAGCCCTAACAGTCAGGGGAAGTTATTAAATGTGACACAGTTTGGGGAGACCAAACAGTCAGGAGAACTACTACATGACTTAAATGAGTGAGAGGAGGTTATGAGACGACTTAGGAGTTAAAATGTAATATAATGGAGGTTATAACTTGGCGTAGAGGAGTCACAATGATCCAGAACACTACTTCAATACTGAGAAAGGGTCCAGATGGAAACAGACAAATAGCTGATCTTCAAGACACTGCAGAGTAGGAGAAGGACATGAGATGACTTAAAGAAGTTAAGATATGACATAACAGCAAAACCTACAAGACATTGCAGAGTAAGACTTGGGAGGACTGCTAAGTCAAGGTCTAACAGTGGAGGTGGAGCGTGTCTGACTGAAGGTCTTCAGGAGCATGGAGACTGGATCACTAAAGACAACAGAAACAATAGCAGCTCTAGTAGTTGGTTTACCACCGACTACTATCTGACTAGACTATACAACTATACTGACTATACTCACCagctgtactatactatactatactatactgtatataggatcTCTCTCAGGTTTCCATTCCACTGACTTACTGtagagatgaagaagaggaggggaaaagGAGGAAGGAAAGTGAACATCTTGGAGAGGATTActacagtaaacaaagagggggaGACAAAGACTGGAGGGGACATTTGGCTTAACAACGTGAACagatccacacagacacacatagctGTGGGAAGTCGTTTGGTGGTGGGGGTCCGCGCTACAGACCGCtaacacagtgcactacttttaggaAAATTGAAAATGAAGGATTTTAGATTTTAATTTTAATTCAGATTTTTAGTAGTACCCCTACTACCCGTggcgctacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactaacgcacacacactaacgcacacagacagactcaaCCAATCACCTCCAATTGTATACAATTACATGCAATAATATCAATTATTTTTAAGCTCATGTGTTGCTAATCAAACCCCCACTGACAATACAATAAGATAAATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002472840.2 False 1852 mRNA 0.43 2 17715037 17716919
TU1742968 True 1312 lncRNA 0.42 2 17715184 17716526
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Neighbor

gene id symbol gene type direction distance location
LOC118936563 LOC106591654 coding upstream 1 17705378 ~ 17715036 (+)
LOC110527382 LOC106575451 coding upstream 74247 17638633 ~ 17640790 (+)
LOC110527377 LOC100136320 coding upstream 78453 17631679 ~ 17636584 (+)
LOC110527374 LOC106592210 coding upstream 83905 17623786 ~ 17631132 (+)
LOC110527370 LOC106575456 coding upstream 94602 17611532 ~ 17620435 (+)
LOC110528768 LOC106591671 coding downstream 114531 17831450 ~ 17839017 (+)
LOC110527394 LOC106591034 coding downstream 325814 18042733 ~ 18053825 (+)
LOC110528909 LOC106595470 coding downstream 340783 18057702 ~ 18075184 (+)
LOC110495693 LOC105019803 coding downstream 359281 18076200 ~ 18093990 (+)
atr atr coding downstream 380644 18097563 ~ 18129363 (+)
G1522348 LOC106575485 non-coding upstream 30505 17675210 ~ 17684532 (+)
G1522385 NA non-coding upstream 43097 17670456 ~ 17671940 (+)
G1522372 NA non-coding upstream 70298 17642830 ~ 17644739 (+)
G1522368 NA non-coding upstream 76864 17637971 ~ 17638173 (+)
G1522396 NA non-coding downstream 778 17717697 ~ 17718046 (+)
G1522401 LOC106591655 non-coding downstream 7196 17724115 ~ 17733070 (+)
G1522410 LOC100194703 non-coding downstream 30526 17747445 ~ 17747757 (+)
G1522412 NA non-coding downstream 34788 17751707 ~ 17753430 (+)
G1522413 NA non-coding downstream 43814 17760733 ~ 17764467 (+)
LOC110495674 LOC106575504 other upstream 1246614 16454118 ~ 16468453 (+)
G1520748 NA other upstream 1776219 15938230 ~ 15938818 (+)
G1520742 NA other upstream 1792138 15919157 ~ 15922899 (+)
LOC110495644 LOC106575583 other upstream 1915156 15796262 ~ 15801788 (+)
G1522415 LOC106575491 other downstream 49300 17766219 ~ 17766694 (+)
G1522437 LOC106575479 other downstream 122750 17839669 ~ 17844014 (+)
G1522438 NA other downstream 139222 17856141 ~ 17860614 (+)
G1522684 NA other downstream 662168 18379087 ~ 18380258 (+)
LOC110495728 LOC106574584 other downstream 877415 18594324 ~ 18595682 (+)

Expression

LOC110519433 Expression in all Baseline Samples

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LOC110519433 Expression in each Bioproject

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LOC110519433 Expression in each Sample
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Co-expression Network