LOC110528768 (LOC106591671)


Basic Information

Item Value
gene id LOC110528768
gene name LOC106591671
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 17831450 ~ 17839017 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952086.1
TTTTCTTTAGAAGTGGAGCCTCTCCAAACTGACAGGACTACACAACAGACCCAggagagacaacacacagttCTGGGATTACTTCTTGAGGAATTTTCTCATCGAAAACTAACACTAACTTCACACAGTATTTGGCTATCATTTTCTTCTGTTTTACAGTTTTCACCAGGGTTTGTACAACACAGGACTATTTTGAAATCATAACAATTCCTTTCACAATAGTCCCACAGGCGTTGTGAGCCTGGCAAGCGAGGCTACTTTCACACAAGCTTCAAACTATCTTTAAAGTATCATCAGTTGTTTTTGGACTATTTGGGCTGTGGACTGTCCAATTCACCGTCTTGAGTCACTCTGACTGCCTGGACCATTTTACGATTTTCTAAACAGTTTTCGGAGACTATTCTATCCTAGGACTACCCTACCTCTCATTGCCATGGCGAACAGCTGTCTCCAGCTCAGCGGTTTTGTGATGAGTTGTATCGGCTGGGTCGGGATCCTTATCGCCACGGCCACCAACGACTGGGTAGTGACATGTAAATACGGCATGAACACCTGCAAGAAGATGGACGAGTTAGGAGCCAAGGGCCTGTGGGCTGAATGTGTCATTTCAACCGCCCTCTATCACTGTATATCACTGACACAGATATTGGACCTACCGGcaTACATCCAGACGTCGAGGGCATTGATGATAACTGGATCCCTCCTGGGGCTGCCTGCAGTGGGGATGGTCCTAACAGCCACGCCCTGCATCTCTCTGGGTGATGAGCCTCAGTCAGCCAAGAACAAACGATCCCTACTTGGGGGAGTTCTCATACTGCTAGTGGCTCTCTGTGGGGGGGTGTCCACAGTATGGTTTCCTATCGGAGCCCACCAGGACCAGGGACTCATGTCGTTTGGGTTCAGCCTGTACGCTGGCTGGGTGGGCACGGCCTTCTGTCTCCTGGGAGGGGCCATGATCACCTGCTGTTCCACTGAACCGTCCCAACACTACAATCACCATGACAACGACAGGTTCTACTACTCCAAAGGACAGGGGCCTGGCAACCCTGTTCCACCCTCCACTAACCATGCCAAGAGTGCCCATGTTTAGACACACATGAAGTacatacgtgcacacacacacacgcacacacacacacacagacacacaccagtgTTGTGTAATGCAGAGCGACGTCTAACCTGGTGCCTGAAGAGAAACCAAGGGGTCCTGATCGGGACAACCCTGCTCTGATGAAGGACTAATTTTCATCTCTTTGTTATACAatgaaggctagggttagggttctttgttttacaatgaaggctagggttagggttagggttatttgTTCTACAatgaaggctaggGTTAGGGTTCTTTGTTCTACAATgaaggctaaggttagggttcttTGTTCTACAatgaaggctagggttagggttctttGTTCTACAatgaaggctagggttagggttctttGTTCTACAATgaaggctaaggttagggttcttTGTTCTACAATgaaggctagggttaggattagggttctttgttttacaatgaaggctagggttaggattagggttctTTGTTTTACAATGAAGGCTATGATTAGGATTAGGGTTCTTTGTTCTACAATgaaggctagggttaggattagggttctTTGTTCTACAATGAAGGCCAAGGTTAGGGTTCCTTGTTCTACAATgaaggctaaggttagggttatttgTTCTACAATgaaggctagggttaggattagggttctTTGTTCTACTGTGAAGGATAACTGTGGATGGAAAGTACTGTGCACCTGTCAGTGCATTTTATAGAAAATATAGTGTACCTTTTTTAATAAAGACTGTCTTGATTTTTAGTGTTTTGATAAATACCATGTATTGAATGTTTCTTGTTGTTGATTATACATTGATCATTATGTGGGTACCTACCTGTGTTCCAACAGTACTGTGGTAAGgaaatgtattattatatagtTTCATTATACGATGACAAACCGATGAAATTGCAATATAGCCATTCTCTCAAACACTGCCAAGTCAGTTTCTTCAGCCTGATGGAACGGTTAGTGATAGGGTTGGCCTAACAATCTGGCCATCCGGAATCACAACAACACGCTGACTTCTTCCCCATGGAAGCGCGCACATCGTTTTtcgtgacgttgtcagctaaTCCATTTATACTGTATGCAGCGTtgaccgtgaatgcagtctctgctaacgCAGGAATATTACCTTTACATTTTTAACGCGCTATAGCGCAGACCTTTAGTGCTCGAGCCCCTAGAGGGCTTGAGTGACCGTAATGAACAAATTATGTTTTGACAAAGAGAACTACAACTAAAATTGTTAAGATAACATGATTCATTTCCTGTTTGATCCACATCTGTAGCAGAGGATGtgtactgtttctatgtctccaGGTTTCATATCTCTGGCAACATGGTCCCTCCCTTTTTCACGTCTAGACCTCTGCATCTCTAATGACACcctaccctatatagtgcactacaaaggacAGATGGGGGTAAACACGACATTGTATGTGTCTCTGGCCTGTGTTAACGCAGCACGCTGGGGTGTCATTTCAGATGTGTTTGTTCATATGTGGTCTATACACCAGAGTAACACTCCCTCTCTGTAGTTCTAGCAATACATCTTTGTTTAAACACAGACACGTTTGTGTTTATCTTGGTTAATGTATTGTGCTATGTTGTGCTATCCCAGTGTTTTTGTTCGATTTTCtgtaataaataaaaatgtcatttggttaatactaataataataatgacaaagtCCCAA
>TU1743072
gttagggttctttgttttacaatgaaggctagggttagggttctttGTTTTAAAATGAAGGTTAGGGTTCTTTGTTTTCTACAATGAAGGCTAGGGGTAGGGTTCTTTGTTTTACAATGAAGGTTAGGGTTCTTTGTTCTACAATgaaggctaaggttagggttcttTGTTCTACAATgaaggctagggttaggattagggttctttgttttacaatgaaggctagggttaggattagggttctTTGTTTTACAATGAAGGCTATGATTAGGATTAGGGTTCTTTGTTCTACAATgaaggctagggttaggattagggttctTTGTTCTACAATGAAGGCCAAGGTTAGGGTTCCTTGTTCTACAATgaaggctaaggttagggttatttgTTCTACAATgaaggctagggttaggattagggttctTTGTTCTACTGTGAAGGATAACTGTGGATGGAAAGTACTGTGCACCTGTCAGTGCATTTTATAGAAAATATAGTGTACCTTTTTTAATAAAGACTGTCTTGATTTTTAGTGTTTTGATAAATACCATGTATTGAATGTTTCTTGTTGTTGATTATACATTGATCATTATGTGGGTACCTACCTGTGTTCCAACAGTACTGTGGTAAGgaaatgtattattatatagtTTCATTATACGATGACAAACCGATGAAATTGCAATATAGCCATTCTCTCAAACACTGCCAAGTCAGTTTCTTCAGCCTGATGGAACGGTTAGTGATAGGGTTGGCCTAACAATCTGGCCATCCGGAATCACAACAACACGCTGACTTCTTCCCCATGGAAGCGCGCACATCGTTTTtcgtgacgttgtcagctaaTCCATTTATACTGTATGCAGCGTtgaccgtgaatgcagtctctgctaacgCAGGAATATTACCTTTACATTTTTAACGCGCTATAGCGCAGACCTTTAGTGCTCGAGCCCCTAGAGGGCTTGAGTGACCGTAATGAACAAATTATGTTTTGACAAAGAGAACTACAACTAAAATTGTTAAGATAACATGATTCATTTCCTGTTTGATCCACATCTGTAGCAGAGGATGtgtactgtttctatgtctccaGGTTTCATATCTCTGGCAACATGGTCCCTCCCTTTTTCACGTCTAGACCTCTGCATCTCTAATGACACcctaccctatatagtgcactacaaaggacAGATGGGGGTAAACACGACATTGTATGTGTCTCTGGCCTGTGTTAACGCAGCACGCTGGGGTGTCATTTCAGATGTGTTTGTTCATATGTGGTCTATACACCAGAGTAACACTCCCTCTCTGTAGTTCTAGCAATACATCTTTGTTTAAACACAGACACGTTTGTGTTTATCTTGGTTAATGTATTGTGCTATGTTGTGCTATCCCAGTGTTTTTGTTCGATTTTCtgtaataaataaaaatgtcatttggttaatactaataataata

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952086.1 False 2806 mRNA 0.44 4 17831450 17839017
TU1743072 True 1464 lncRNA 0.39 2 17837440 17839002

Neighbor

gene id symbol gene type direction distance location
LOC110519433 NA coding upstream 114531 17715037 ~ 17716919 (+)
LOC118936563 LOC106591654 coding upstream 116414 17705378 ~ 17715036 (+)
LOC110527382 LOC106575451 coding upstream 190660 17638633 ~ 17640790 (+)
LOC110527377 LOC100136320 coding upstream 194866 17631679 ~ 17636584 (+)
LOC110527374 LOC106592210 coding upstream 200318 17623786 ~ 17631132 (+)
LOC110527394 LOC106591034 coding downstream 203716 18042733 ~ 18053825 (+)
LOC110528909 LOC106595470 coding downstream 218685 18057702 ~ 18075184 (+)
LOC110495693 LOC105019803 coding downstream 237183 18076200 ~ 18093990 (+)
atr atr coding downstream 258546 18097563 ~ 18129363 (+)
LOC110495694 LOC106575448 coding downstream 292089 18129571 ~ 18136939 (+)
G1522434 NA non-coding upstream 9844 17821093 ~ 17821606 (+)
G1522433 NA non-coding upstream 11457 17819787 ~ 17819993 (+)
G1522430 NA non-coding upstream 15930 17815300 ~ 17815520 (+)
G1522428 LOC106591757 non-coding upstream 16851 17813636 ~ 17814599 (+)
G1522426 NA non-coding upstream 21438 17809800 ~ 17810012 (+)
G1522449 slc7a14 non-coding downstream 5244 17844261 ~ 17844493 (+)
G1522450 LOC106591672 non-coding downstream 5537 17844554 ~ 17845026 (+)
G1522440 NA non-coding downstream 6161 17845178 ~ 17845491 (+)
G1522441 NA non-coding downstream 6858 17845875 ~ 17846110 (+)
G1522451 NA non-coding downstream 8327 17847344 ~ 17847644 (+)
G1522415 LOC106575491 other upstream 64756 17766219 ~ 17766694 (+)
LOC110495674 LOC106575504 other upstream 1363027 16454118 ~ 16468453 (+)
G1520748 NA other upstream 1892632 15938230 ~ 15938818 (+)
G1520742 NA other upstream 1908551 15919157 ~ 15922899 (+)
G1522437 LOC106575479 other downstream 652 17839669 ~ 17844014 (+)
G1522438 NA other downstream 17124 17856141 ~ 17860614 (+)
G1522684 NA other downstream 540070 18379087 ~ 18380258 (+)
LOC110495728 LOC106574584 other downstream 755317 18594324 ~ 18595682 (+)
LOC118936474 LOC106574488 other downstream 876845 18702289 ~ 18722091 (+)

Expression


Co-expression Network