LOC110495694 (LOC106575448)


Basic Information

Item Value
gene id LOC110495694
gene name LOC106575448
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18129571 ~ 18136939 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037393.1
actggagcagcagcacagccaggtggactggggacagcaaggagtcatcatgtcaggtattcctggggcatggtcctactGCTGACCTCGTACAGCTGACATACTGCTGACCTCGTACAGCTGACATACTGCTGACCTCGTACAGCTGACATACTGCTGACCTCGTACAGCTGACATACTGCTGACCTCGTACAGCTGACATACTGCTGACCTCGTACAGCTGACATACCGCTGACCTCATACAGCAGACATACCGCTGACCTTATACAGCTGACATACTGGTGACCTTATACAGCTGACATACTGCTGACCTTATACTGCTGACCTCATACTGCTGACCTCATTCATACTGCTGACCTCATTCATACTGCTGACCACATACTGCCCACCACATACTGCTGACCACATACTGCCCACCACACTGCTGATCTCATACAGTTGACCTCACACTGCTGACTTCATACAGCTGACTTCATACAGTTGACCTTACACTGCTGACCTCATACTGCTGACCACATACTGCTGACCTCATTCATACTGCTGACCTCATTCATACTGCTGACCTCATTCATACTGCTGACCTCATTCATACTGCTGACTTCATACTGCTGACCTCATACTGCTGATCTCATACAGTTGACCTCACACTGCTGACCTCATACTGCTGACCTCATACTGCCGACCACATACTGCCCACCACATACTGCCCACCACATACCGCCCACCACATACCGCCCACCACATACCGCCCACCACATACTGCTGATCTCATACAGTTGACCACACACTGCTGACCTCATACTGCTGACCTCATACTGCTGACCTCATACTGCTGACCTCATACTGCTGACCTCATACTGCTGACCTCATACTGCTGACCTCATACTGCTGACCACATACTGCTGACCTCATACTACTGAATACATACTGCTGACCTCATACTGCTGACCACATACTGCTGACCACATACTGCTGACCACATACTGCTGACCTCATACTGCTGACCTCATACTGCTGACCTCATACTGCTGACCACATACTGCTGACCACACACTACTGACCACACACTGCTGACCACACACTGCTGACCACATACTGCTGACCTCATACTGCTGACCACATACTGCTGACCTCATACTGCTGACCTCATACTGCTGACCAAATACTGCTGACCTCATACTGCTGACCACACACTACTGACCACACACTGCTGACCACATACTGCTGACCTCATACTACTGAATACATACTGCTGACCTCATACTACTGACCACATACTGCTGACCTTATACTGCTGACCTCATACTGCTGACTGCTGACCACATACTGCCCACCACATACTGCTGATCACATATTGCTGACCACATACTGCTGACCTCATACTGCTGACCACACACTACTGACCACACACTGCTGACCACATACTGCTGACCACATACTGCTGACCTCATACTACTGAATACATACTGCTGACCTCATACTACTGACCACATACTGCTGACCTCATACTACTGACCACATACTGCTGACCTCATACTACTGAATACATACTGCTGACCTCATACTACTGACCACATACTGCTGACCTCATACTACTGAATACATACTGCTGACCTCATACTACTGACCACATACTGCTGACCTTATACTGCTGACCTCATACTGCTGACTGCTGACCACATACTGCCCACCACATACTGCTGATCACATATTGCTGACCACATACTGCTGACCTCATACTACTGACCACATACTACTGACCACATATTGCTGACCACATACTGCTGACCTCATATTGCTGACCACATACTGCTGACCTCATACTACTGACCACATACTACTGACCACATACTACTGACCACATACTGCTGACCACATACTACTGACCACATACTACTGACCACATACTGCTGACCTCATACTGCTGACCGCCGACCTCATACTGCTGACCTCATACTGCTGACTGCTGACCACATACTGCCCACCACATACTGCTGATCTCATACTGCCCACCACATACTGCTGATCTCATACAGTTGACCTCACACTGCTGACCTCATACTGCTGACCACATACTGCTGACCTCATACTGCTGACCTCATACTGCTGACTGCTGACCACATACTGCTGACCTCATACTGCTGACCACATACTGCTGATCACATACTGCCCACCACATACTGCTGATCTCATACTGCTGACTTCATACAGCTGACTTCATACAGCTGACCTCACACTGCTGACCACATACTGCTGACCTCATATCGGTGACGTCTTACCGCTGACCTCATGAATTGACCCTTCGCTAACCAGCTGAGCTAGCAAACAATGTAACAAATTATAATTTTTGAATCTCAAAATACTCCaaaaggctctgcatctcaggaATCACAAGTACCCCTGGTGCACTGTTAAATTATTTTTccattacatgttttatttatttatttaattttttaaagaAAACTCTGTTTTTGCCATAGCCCTCACTGGCTTTCATGCGATTTAAACGTGAGCTTGTCCTATGTGCCAGACTGGATGACAGTTGCTATCCATTGGACCTTCTCAGACTTAACGAAGGGTTTATACGTAGTTGGCTCAGGAGAGGTGTGCCTTAGGTTTCCAAGAGTGTCAACTATGCACAGCATCAAAAGTCAATTCtcatcgctctctcctctctcattctctccctatgttttctctctctctgtctgtctgtctctctctctctctctctctctctgagtctaaATGCTAACCCATTAGGAGAGGAGTATGTAGCTCATGTCTCCTACATGTTCAGCTTCCTACGAGTCAGATGGCTGAAGATGTGGGCCCAGGAAGTCTCTCGGGCAGAGATGGAGCTGAGgatctctcagtgtgtgtttgaccgacagtcagagatcaccagaCTACTGCTGGAGGGAATCAACACTACACATGCTGCCCATTTGAGAAGTCTGTCTGACTTTGTAGAAGCCCAGGGTAGCTACCAGCTCACACAGGACCTACACACCCAACTGGCctggtgtgtatctgtgtgtgtgtgtgtgttaaccgcTTTTTACTTTCTCTCATTGTAGCTCTCCCCCTCTGATCTGCTATAATAACAACTGGCACTTAGAAACTAACCAACCCTCAACAGGTAACCTGCCCTTATCAACCATTCAGCCCCTAGCAACCTGTGACTCTTCAACAACCAACCAGGCAACTAGTCAACCCTTAGCAACCAACCAGGCAAACAGCCAACCCTTAACAACCACCCAGCCCTTAGCAACATGTGAGTTTTCGACAACCATCCAGGCAACTAGCCAACCTGTAGCAGCCAACCAGGCAACTAGCCAACCCCTATCAAGCAACCAGGCAAACAGCCAACCCTTAGCAACCAACCAGGCAGCCTACGAGTCCTCAAAAACCAAGAAGTCCTCGACATACAACCAGACAAGCAGCCAAATCTTAGCAACCACTGGATCCTCTACAACCAACCAGGTAACCAACTAGTTTAGATTAGTTTATTGACAAAAATGTTGATTTGCTAGGCCTCGACACTCATCCAGGCAACCAGCCAACCCCTAGAAATCAACCAGGCAACCAGCCAACCTCTACAAACCATCCAGGCAACCAATGAGTCCCCAACAACCAATGTGTCCTCATCAACCAACCAGGCAACAAACCAACCCTTAACAACTAACCAGCCATTGACAACCAACCAGGCAACCAGTCAATCCCTAGCAACCAACCAGGCACCCAGTCAATCCTTAGCAAACATTGAGTCCTCACCAATCAACGAGTCCCCGACAAACAACCAAGCAACCAGCCAAGCCTTgacaaccaaccagccaaccattAGCAACCAATGAGTCCTCAACCACCAACCAGGTAACTAACCAACCCTTGCAAACCAACCAAGCCAACAATGACTTCTCAATAACCAATGAGTCCTCAACCACCAACCAGGCAACTAGCCAACCCTTAGCGACTCACCAGCCCTCGACAACTAACCAGGCAACCAGCCAATCCTTAGCAACTAACCAGGTCCCCAGCCAACCCTTTACAACCAGCTGGGAATCTTTCAAACCCTTAGCAACCAATGACTCATCAACAACCAACGAGTTCTCAACAACCAACCAGACAACTAGCCAACCCTTAGCCACCAACAGGTCAACCAACCAGACAACCAATGTGTTTTCAACAACTAATGAGTCCTCGACCACCAACCAGGTAACTAACCAGCCCTCGACAACCAATAAGGTAACCAACCAATCTCTAGCAACCTACCGGACAAACAGCCAATGAGTCGTCACCAAACAACGAGAACTTGACAAACAACCAAGCAACCAGCCAACCCTTGACATCCAACCAGGCAATCCTTACAAACCACCCggtaaccaaccaaccaacagacAGCCCTTGATAAGCCACCAGGAAACCATCAAACCCTTAGCAGCCAATGATTTCTCAGCAATCAACGAGTCCTCGACAATCAAGGAGAACGTGACAAACAACCAACTCTCAACAACCAACCAGCCCTTAGAAACCAGCCAGAGAACCAGTCagcctgcaggtggtcctgtagCTGACTGAACAATCTGACTGTGGAACTGTCTGTATGAAAAGCGTGCGTTTATATTGTGGGTTTGAGTTGTGAACAGCTCCTCTCTGCCAAAACATCAGCTACCATGGCTAGGTCCTAAATGAAGGCTCTGTCTCAGTCGTAGTGGTGAAGGGCAACACAGCTATAGGGGCCGTCTATAAACCGTAGCAGGCTTGTATTGACCATTCACCAGTGTTGTTGTTGGACCCAGCAGGACACACGCGTACGGGCTAATCCAGGAAGAGTAAGAGGACATGCTACTATGGAGTCATCAGTGGTAGGGAAGTCTTAGATGTTgatatctactgtcctgtcatAACCTGTGTGTCTATCGGAGCGTCCATGTACTCTTTAAGGGAGTTATATGGTGGTGGTCTACAGTATGTGCAGGTTATCTAGATGTATGTAGGTTACTGTATATGGGGGTGTAGATCTATATGGTTGGTATAGACTGTCTATTTGGAGACTTGGAGGAAAACTGACAGCTGTGTTTACATGATGTATTGTGTCGTCTGAAAACAGTTTGTGTGATCAAGAGAGGTGACATGTTTCATATGTaatacatgtgtgtgtgacccTTCACCTCTATAGGGTGAGGTCATTTTCCATACGGCAACATGTCGCGCTTATTCCATAGTATTAAACATACACACAGCCTTGAATATAGTCCCACCAGGCTAAACCGTGTAAATGTTTCCGTCTACAGATGTTTTCAATTGACCCTGCCTGAGAGGgcagctatacacacacacacgacagccCCGCCTCGATCTGCTGGTGCTGAGGTCTACGTGCTTACTCTGGGTTACTgggacacagaacacacacacattaactattGAGGTTTGACTTCCCTGTCTCTGAACCTGTCAGGGTTGTTTCAGTGACATTATGTTTTATTAACTCTGACCATATAAGATCATCTGGAATTATTTAGAATCATATTAAACTGATAATGAGGC
>TU1743201
CCAAAAATCCCCTAAAACCGCGAATAGAGAAACGAGCTACTGGAGAGGTAAACAGAATGAACATATTCCGCTGTCATTCATTCAAACAACGCGAGCTGATATGATGGATATTCTTAGCTCCTCTGTGTGGAAAATGTTATGACAGGATACATCACCGCTAGTCATACTCTGTCTTTCGAGAATGGTCGTTGTTTACGGTCTCAGTTTTTCACATGCCAGTAATCCATTTAGAAGAGATGTCTTTTTATAGCTGTCCACGGCTGCTAGACAACTAGCCAAGCTCGTTGCGCCGTAGGAGAGAGGCCGACCTTGACCAGATGGATATCACGAGGCTCGCTGTGGACGCGGGCGCGTTTATCAACCGAGCAGTTCAGGAGAGGAGTATGTAGCTCATGTCTCCTACATGTTCAGCTTCCTACGAGTCAGATGGCTGAAGATGTGGGCCCAGGAAGTCTCTCGGGCAGAGATGGAGCTGAGgatctctcagtgtgtgtttgaccgacagtcagagatcaccagaCTACTGCTGGAGGGAATCAACACTACACATGCTGCCCATTTGAGAAGTCTGTCTGACTTTGTAGAAGCCCAGGGTAGCTACCAGCTCACACAGGACCTACACACCCAACTGGCctggtgtgtatctgtgtgtgtgtgtgtgttaaccgcTTTTTACTTTCTCTCATTGTAGCTCTCCCCCTCTGATCTGCTATAATAACAACTGGCACTTAGAAACTAACCAACCCTCAACAGGTAACCTGCCCTTATCAACCATTCAGCCCCTAGCAACCTGTGACTCTTCAACAACCAACCAGGCAACTAGTCAACCCTTAGCAACCAACCAGGCAAACAGCCAACCCTTAACAACCACCCAGCCCTTAGCAACATGTGAGTTTTCGACAACCATCCAGGCAACTAGCCAACCTGTAGCAGCCAACCAGGCAACTAGCCAACCCCTATCAAGCAACCAGGCAAACAGCCAACCCTTAGCAACCAACCAGGCAGCCTACGAGTCCTCAAAAACCAAGAAGTCCTCGACATACAACCAGACAAGCAGCCAAATCTTAGCAACCACTGGATCCTCTACAACCAACCAGGTAACCAACTAGTTTAGATTAGTTTATTGACAAAAATGTTGATTTGCTAGGCCTCGACACTCATCCAGGCAACCAGCCAACCCCTAGAAATCAACCAGGCAACCAGCCAACCTCTACAAACCATCCAGGCAACCAATGAGTCCCCAACAACCAATGTGTCCTCATCAACCAACCAGGCAACAAACCAACCCTTAACAACTAACCAGCCATTGACAACCAACCAGGCAACCAGTCAATCCCTAGCAACCAACCAGGCACCCAGTCAATCCTTAGCAAACATTGAGTCCTCACCAATCAACGAGTCCCCGACAAACAACCAAGCAACCAGCCAAGCCTTgacaaccaaccagccaaccattAGCAACCAATGAGTCCTCAACCACCAACCAGGTAACTAACCAACCCTTGCAAACCAACCAAGCCAACAATGACTTCTCAATAACCAATGAGTCCTCAACCACCAACCAGGCAACTAGCCAACCCTTAGCGACTCACCAGCCCTCGACAACTAACCAGGCAACCAGCCAATCCTTAGCAACTAACCAGGTCCCCAGCCAACCCTTTACAACCAGCTGGGAATCTTTCAAACCCTTAGCAACCAATGACTCATCAACAACCAACGAGTTCTCAACAACCAACCAGACAACTAGCCAACCCTTAGCCACCAACAGGTCAACCAACCAGACAACCAATGTGTTTTCAACAACTAATGAGTCCTCGACCACCAACCAGGTAACTAACCAGCCCTCGACAACCAATAAGGTAACCAACCAATCTCTAGCAACCTACCGGACAAACAGCCAATGAGTCGTCACCAAACAACGAGAACTTGACAAACAACCAAGCAACCAGCCAACCCTTGACATCCAACCAGGCAATCCTTACAAACCACCCggtaaccaaccaaccaacagacAGCCCTTGATAAGCCACCAGGAAACCATCAAACCCTTAGCAGCCAATGATTTCTCAGCAATCAACGAGTCCTCGACAATCAAGGAGAACGTGACAAACAACCAACTCTCAACAACCAACCAGCCCTTAGAAACCAGCCAGAGAACCAGTCagcctgcaggtggtcctgtagCTGACTGAACAATCTGACTGTGGAACTGTCTGTATGAAAAGCGTGCGTTTATATTGTGGGTTTGAGTTGTGAACAGCTCCTCTCTGCCAAAACATCAGCTACCATGGCTAGGTCCTAAATGAAGGCTCTGTCTCAGTCGTAGTGGTGAAGGGCAACACAGCTATAGGGGCCGTCTATAAACCGTAGCAGGCTTGTATTGACCATTCACCAGTGTTGTTGTTGGACCCAGCAGGACACACGCGTACGGGCTAATCCAGGAAGAGTAAGAGGACATGCTACTATGGAGTCATCAGTGGTAGGGAAGTCTTAGATGTTgatatctactgtcctgtcatAACCTGTGTGTCTATCGGAGCGTCCATGTACTCTTTAAGGGAGTTATATGGTGGTGGTCTACAGTATGTGCAGGTTATCTAGATGTATGTAGGTTACTGTATATGGGGGTGTAGATCTATATGGTTGGTATAGACTGTCTATTTGGAGACTTGGAGGAAAACTGACAGCTGTGTTTACATGATGTATTGTGTCGTCTGAAAACAGTTTGTGTGATCAAGAGAGGTGACATGTTTCATATGTaatacatgtgtgtgtgacccTTCACCTCTATAGGGTGAGGTCATTTTCCATACGGCAACATGTCGCGCTTATTCCATAGTATTAAACATACACACAGCCTTGAATATAGTCCCACCAGGCTAAACCGTGTAAATGTTTCCGTCTACAGATGTTTTCAATTGACCCTGCCTGAGAGGgcagctatacacacacacacgacagccCCGCCTCGATCTGCTGGTGCTGAGGTCTACGTGCTTACTCTGGGTTACTgggacacagaacacacacaca

Function

NR:

description
PREDICTED: mucin-17-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037393.1 False 5556 mRNA 0.47 3 18131106 18136939
TU1743201 True 3033 lncRNA 0.48 4 18129571 18136808

Neighbor

gene id symbol gene type direction distance location
atr atr coding upstream 1743 18097563 ~ 18129363 (+)
LOC110495693 LOC105019803 coding upstream 37116 18076200 ~ 18093990 (+)
LOC110528909 LOC106595470 coding upstream 55922 18057702 ~ 18075184 (+)
LOC110527394 LOC106591034 coding upstream 77281 18042733 ~ 18053825 (+)
LOC110528768 LOC106591671 coding upstream 292089 17831450 ~ 17839017 (+)
LOC110495707 LOC106574672 coding downstream 6197 18143136 ~ 18145481 (+)
LOC110495710 LOC106574671 coding downstream 19911 18156850 ~ 18158501 (+)
LOC110517300 LOC106575446 coding downstream 39782 18176721 ~ 18224140 (+)
LOC110497069 ppp2r3a coding downstream 114799 18251738 ~ 18305237 (+)
LOC110495706 LOC105019796 coding downstream 173042 18309981 ~ 18432516 (+)
G1522544 NA non-coding upstream 108825 18022058 ~ 18022281 (+)
G1522487 NA non-coding upstream 190395 17938478 ~ 17940711 (+)
G1522466 LOC100534484 non-coding upstream 197825 17921980 ~ 17933281 (+)
G1522498 LOC106575464 non-coding upstream 210013 17920084 ~ 17921093 (+)
G1522477 NA non-coding upstream 241898 17885675 ~ 17889208 (+)
G1522600 NA non-coding downstream 79701 18216640 ~ 18217776 (+)
G1522563 NA non-coding downstream 87843 18224782 ~ 18231387 (+)
G1522601 LOC106575419 non-coding downstream 94951 18231890 ~ 18236181 (+)
G1522604 NA non-coding downstream 102970 18239909 ~ 18241184 (+)
G1522605 NA non-coding downstream 104325 18241264 ~ 18242350 (+)
G1522438 NA other upstream 270492 17856141 ~ 17860614 (+)
G1522437 LOC106575479 other upstream 287092 17839669 ~ 17844014 (+)
G1522415 LOC106575491 other upstream 364412 17766219 ~ 17766694 (+)
LOC110527374 LOC106592210 other upstream 503462 17623786 ~ 17631132 (+)
LOC110495674 LOC106575504 other upstream 1662683 16454118 ~ 16468453 (+)
G1522684 NA other downstream 242148 18379087 ~ 18380258 (+)
LOC110495728 LOC106574584 other downstream 457395 18594324 ~ 18595682 (+)
LOC118936474 LOC106574488 other downstream 578923 18702289 ~ 18722091 (+)
LOC110495746 LOC106574508 other downstream 822505 18959384 ~ 18978475 (+)
G1523506 NA other downstream 885066 19022005 ~ 19022395 (+)

Expression


Co-expression Network