LOC110495707 (LOC106574672)


Basic Information

Item Value
gene id LOC110495707
gene name LOC106574672
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18143136 ~ 18145481 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571099.2
TAACTGAGATGTGTGTATATAAGGAGGGGGTCTGAGCCTCATAAAGTGCATCATATCTGAAGAGGTATCGTTTCAGAATGAGGGGTGCTGTAGCTCTGCTTgtgttgctgttctgtctgtctggggcatGGACTCAGGAGGAGAGTGGACGGGTCAGAGAGAGTGACATCACTCAACAGGGACacagtgcagggagagagagccgaGGGAGCGAAGCTACAGAGGTGACCGGCGAACGTGCGACCATGCAACCTGACATCTGGGATGAGATGAAGGGCCTGAGAgacatggtgatggagcagagagagaagctgaGGACGATGGAGGGCAGAGTGACAGCCTGTGAGGGTGAGGTAgagacacagaaaaacacagtgaTGGACCTAAGAATCCAGCTGATGGTCACTAAGGCCAAAGTGGCGGAACTGGAGAAAGATAATGCAGCCCTGGAGGCCAGACTGAGTGCCAGTGAGAGAGAACTGACCACCACTAGGAATGATGTTGAGGAACTGAAGAGACAGAGCACAGACAGACCAAAAGTGGCTTTCTCTGCTGCTGGTTTGAACGATAAGGGACCCATAGGTCCCTTCAATACTGACGCCAACCTGGTCTACACCAGAGTCATCACCAACATCGGCAAGGCCTACAGCCCGATTACAGGTGCCTTCACAGCACCAGTGAGAGGCGTCTACTACATCAGATTCACCGCTGCTCAACATGGGCTTGGTTACATGGGTATATCCATGTTAAAGAATGGGCAGGCGACCATGTCCAACTATCATTACAATAGCCATGGATACTGGATCCATTTATCTAATGGAGTCATTCTGGAGCTGGAGGAGGGAGACGTGGTGTACATGCGTCTCCCTGCGAGCTTCAGGCTCTATGATAACTCATATAATCAAAACATCTTCAGTGGCTTCCTGCTTTTCACTGTGTGAGAACATCAGAAATACTGTGATGGTCTCATGTGAAGAGGAGTTTGAATGTCAGGGCCTCGCGGAGCCACAAAGGCTCCTCTTACGATCAATAAACACATCTTGAAAAAAGGAAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571099.2 True 1055 mRNA 0.50 4 18143136 18145481

Neighbor

gene id symbol gene type direction distance location
LOC110495694 LOC106575448 coding upstream 6197 18129571 ~ 18136939 (+)
atr atr coding upstream 13773 18097563 ~ 18129363 (+)
LOC110495693 LOC105019803 coding upstream 49146 18076200 ~ 18093990 (+)
LOC110528909 LOC106595470 coding upstream 67952 18057702 ~ 18075184 (+)
LOC110527394 LOC106591034 coding upstream 89311 18042733 ~ 18053825 (+)
LOC110495710 LOC106574671 coding downstream 11369 18156850 ~ 18158501 (+)
LOC110517300 LOC106575446 coding downstream 31240 18176721 ~ 18224140 (+)
LOC110497069 ppp2r3a coding downstream 106257 18251738 ~ 18305237 (+)
LOC110495706 LOC105019796 coding downstream 164500 18309981 ~ 18432516 (+)
LOC110497071 LOC106574566 coding downstream 302953 18448434 ~ 18480492 (+)
G1522544 NA non-coding upstream 120855 18022058 ~ 18022281 (+)
G1522487 NA non-coding upstream 202425 17938478 ~ 17940711 (+)
G1522466 LOC100534484 non-coding upstream 209855 17921980 ~ 17933281 (+)
G1522498 LOC106575464 non-coding upstream 222043 17920084 ~ 17921093 (+)
G1522600 NA non-coding downstream 71159 18216640 ~ 18217776 (+)
G1522563 NA non-coding downstream 79301 18224782 ~ 18231387 (+)
G1522601 LOC106575419 non-coding downstream 86409 18231890 ~ 18236181 (+)
G1522604 NA non-coding downstream 94428 18239909 ~ 18241184 (+)
G1522605 NA non-coding downstream 95783 18241264 ~ 18242350 (+)
G1522438 NA other upstream 282522 17856141 ~ 17860614 (+)
G1522437 LOC106575479 other upstream 299122 17839669 ~ 17844014 (+)
G1522415 LOC106575491 other upstream 376442 17766219 ~ 17766694 (+)
LOC110527374 LOC106592210 other upstream 515492 17623786 ~ 17631132 (+)
LOC110495674 LOC106575504 other upstream 1674713 16454118 ~ 16468453 (+)
G1522684 NA other downstream 233606 18379087 ~ 18380258 (+)
LOC110495728 LOC106574584 other downstream 448853 18594324 ~ 18595682 (+)
LOC118936474 LOC106574488 other downstream 570381 18702289 ~ 18722091 (+)
LOC110495746 LOC106574508 other downstream 813963 18959384 ~ 18978475 (+)
G1523506 NA other downstream 876524 19022005 ~ 19022395 (+)

Expression


Co-expression Network