LOC110517300 (LOC106575446)


Basic Information

Item Value
gene id LOC110517300
gene name LOC106575446
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18176721 ~ 18224140 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952116.1
GGCAGTAAGGTTGCAGTGAGAGGCTGCGCCACCAGAACAGCATTACAGCGAGGAAGGCTCCACCAGATGGCAGTTTAGGATTGTTCCTTTCTGCTCCAAGGCGCGGTTCCCGCTTCTCACGACatatttacaatattaaaatCTACACACTTTTATCAGATATATCGATTATTTTATTTCGGAAGACTGTAATCGATTGGTCAATGGCCGGTAAAGgggCTGGTGTGTTGTGAGGTGCTGTGTCCCGTCCCCAGTGTTGAGTGAATTTGGTCACCactctgtaacccccccccccacacacacacacacacacacacacacacacacggttgacCCCGTACCGAGCCACACCCCTCCCTCCAGCGgaccacacacacccactctttcctgaggacacacacccctcccctgcaGCAGTCAGGATGATCACCTCTGAGCTGCCTGTCCTACAGGACTCGTCCAATGAGAGCGGAGCGGCAGACACAGTGAgtctgagtgtgagtgtgagtgagctGGAGGACCCGACAGACACTAAAGgcaagaagaagagagggaggcctgGCAGACCACCAGCAGCCAATAAGAAGCCTCGGAAGTCCCCAGCGGAGAAGGCTACAGGCGGGGCTAAAGGGAGGAAGGCCAATGGGGTCCCTCAGACCAACGGCGAGGGAGGAGACCCCGTCACTCTGTTTGAGGTGGTCAGAATGGGAAAGAGTGCCATGCAGTCTGTGGTTGATGACTGGATCGAGTCGTACAAGCAGGACAGAGACATCGCCTTACTGGACCTCATCAACTTCTTTATCCAGTGTTCTGGCTGCAAAGGCACCGTGCGCATCGAGATGTTCCGGAACATGCAGAACGCTGAGATCATCAGGAAGATGACAGAGGAGTTTGACGAGGACAGTGGGGACTACCCTCTCACCATGCCCGGGCCGCTGTGGAAGAAGTTCCGCTACAACTTCTGTGAGTTCATCTGCGTATTGATACGTCAGTGCCAGTACAGCATCATCTACGATGAGTACCTCATGGACACGGTCATATCCCTCCTCACGGGACTATCTGACTCACAGGTCAGAGCTTTCAGACACACCAGCACACTGGCAGCGATGAAGTTGATGACAGCGTTGGTGAACGTGGCGTTGAACCTCAGTATCCACCAGGACAACACCCAGAGACAGTATGAGGCTGAGAGGAACAAGATGGCCGGAAAACGAGCCAATGAGAAGCTAGAGCTGCTGCTGCAGAAGAGGAAGGAGCTCCAGGAGAACCAGGATGAGATTGAGAACATGATGAACTCTATCTTCAAAGGCATCTTTGTCCACcgctacagGGATGCTATAGCTGAGATCAGAGCTATCTGTATTGAGGAGATTGGAGTTTGGATGAAGATGTACTCTGACGCCTTCCTCAACGACAGCTACCTGAAATATGTAGGATGGACCTTACACGACCGGCAAGGTGAGGTCCGTCTGAAGTGTCTGAAGGCTCTCCAGAACCTGTACACCAACAGAGAACTGTTTCCTAAACTGGAGCTGTTCACCAACCGCTTCAAGGACCGCATCGTGTCCATGACTCTGGATAAGGAGTATGACGTGGCTGTGGAGGCTATTAGACTGATCACTCTCATCCTGCAGGGCAGCGAGGATGCGTTGTCCAATGAGGACTGCGAGAATGTCTACCACCTGGTTTACTCCGCCCACAGACCTGTCGCCGTGGCAGCAGGAGAGTTTCTGCACAGGAAGTTGTTCAGCAGACATGACCCCCAGGCAGAGGAGGAGTTGgctaagaggagagggaggagcagcCCCAACGGGAACCTCCTCCGCATGCTGGTGCTTTTCTTCTTGGAGAGTGAGCTTCATGAACATGCAGCCTATCTGGTGGACTCTCTGTGGGAGAGTTCTCAGGAGCTGCTGAAGGACTGGGAGTGTATGACTGAGTTACTGCTGGAGGAGCCTGTacaaggagaggaggTgctgtcagacagacaggagagttCCCTGATAGAGTTGATGGTGTGTACCATCCGGCAGGCAGCAGAGGCTCACCCACCCGTCGGCAGGGGCACTGGGAAGCGTGTTCTCACGGCGAAGGAGAGGAAGACTCAGATAGACGACAAGAACAAACTGACAGAACACTTCATCATGGCCCTGCCCATGCTCCTGTCTAAGTACCAGGCTGACTCTGAGAAGGTGGCTAACCTGCTACAGATCCCTATGTTCTTTGATCTGGACGTGTACAGCGCTGGGCGTATGGAGAagcacCTAGATGCCTTACTGAAGCAGATCCGCCTGGTGGTGGAGAAACACATTGAGACAGATGTTCTGGAGGCCTGCAGTAAGACCTACAGCATCCTGTGTTCTGAGGAGTACACCATCATGAACAGAGTGGACATCGCCCGCTCGCAACTCATCGACGAGATAACGGACCGCTTCACACACTCCGTAGAAGACCTGCTGCAAGAGGCCGAGGAGGCCGACGATGACGACATCTACAACGTTCTGTCTACCCTCAAGAGACTCACGGCCTTCCACAAtgCTCATGACCTGACGCGGTGGGACCTGTTTGGTAGCTGCTacaggttgttgaaggctggTATTGAGCAGGGGGCCATGCCAGAGCAGATCGCtgtccaggccctgcagtgttcCCACTACTCCATACTGTGGCAGCTGGTGAAAATCACAGAGGGAACTCCTAGTAAGGAGGACCTGGTGGCTCTGAGGAGAGTGGTGAAGTCCTTCCTGGCTGTCTGTCAGCAGTGTCTGTCCAATGTCAACACACCTGTCAAAGAACAGGCCTTCATGTTGTTGTGTGACCTGCTGATGGTCTTCAGTCACCAGTTGGTGTCTGGGGGCAGAGAAGGACTGGAGGCCCTGGTGTTCAACCCAGACAGCACCTTACAGAACGAGCTGCTCACCTTCATCCTGGACCACGTCTTTATAGACCAGGACGATGAGAACCAGAGCAtggAAGGCGACGAGGAGGATGAAGCCAATAAGATAGAAGCCCTTCACAAGAGGAGAAACCTGCTCGCAGCCTTCAGCAAACTCATCATCTATGACATCGTGGACATGCCTGCTGCTGCAGACATCTTCAAACACTACATGAAGtATTATAATGACTATGGTGATATCATCAAGGAGACTCTCAGTAAGACCAGACAGAGTGATAAGATCCTCTGTGCCAAAACCCTCATCCTCAGTCTGCAACAGCTGTTCAACGAGcttctccaggaccagggtcCTACTCTGGACAGAACATCGTCTCACGTCAGCGGCATCAAGGAGTTGGCCCGGCGCTTCGCCCTCACCTTCGGCCTGGACCAGATCAAAACCAGAGAGGCTGTCGCTACGCTGCACAAGGATGGTATAGAGTTTGCCTTTAAGTACCAGAACCCCCATGGTGCAGAGTTCCCTCCTCCTAACCTGGCCTTCCTAGAGGTCCTCTCAGAGTTCTCCTCCAAACTGCTGCGACAGGACAAGAAGACTGTtCACTCGTATCTGGAGAAGTTTATGTCGGAGTCGATGTCGGAGCGTCGTGAGGACGTGTGGCTGCCCTTAATCTCCTACCGGAACAGTCTGCtaacaggaggagaggatggggaccGGATGTCGGTAACGTCAGGCGCCAGCAGCAAGACCAGCTCCATCCGCAGCAAGAAGGGACGGACGCCAATACACAAGAGTAAACGCATCGAGGAGGAGAGTAGTGTGGAGGCCTCCTGGCTTCGTGGTAATGACAACCTCCAGACACCGGGGGCGCTAACCACCCCTCAGCTCACCTCCACCGTCCTCAGAGAAAACCCACGGCAGGCGGCGGACACACACCTACCTGACCACGACTCTGAACCTGGCTCAGAGAACGACTATGTACacaaTCCCCAGATGCAGATGTCTTGGCTAGGCCAACAGAAGATGGAGGACAGCAGGAAGGATAGAACAGCCATGAACTACATGAAGGCCCGCAACCAGACTGTCAGACAAACTGTtcgtggtctGATGGAGGATGACGCAGAGCCAATCTTTGAGGACGTCATGATGTCATCGCGAGGTCAACTGGAGGACATGAACGAGGAGTTCGAAGACACCATGGTCATCGACCTGCCTCCCTCCAGGAACAGACGTGAGAGGGCGGAGCTCAGACCAGACTTCTTCGACTCAGCAGCCATGATCGAGGACGAGTCGggtttcaccatgccTATGTTCTGA
>XM_036952115.1
ATGATCACCTCTGAGCTGCCTGTCCTACAGGACTCGTCCAATGAGAGCGGAGCGGCAGACACAGTGAgtctgagtgtgagtgtgagtgagctGGAGGACCCGACAGACACTAAAGgcaagaagaagagagggaggcctgGCAGACCACCAGCAGCCAATAAGAAGCCTCGGAAGTCCCCAGCGGAGAAGGCTACAGGCGGGGCTAAAGGGAGGAAGGCCAATGGGGTCCCTCAGACCAACGGCGAGGGAGGAGACCCCGTCACTCTGTTTGAGGTGGTCAGAATGGGAAAGAGTGCCATGCAGTCTGTGGTTGATGACTGGATCGAGTCGTACAAGCAGGACAGAGACATCGCCTTACTGGACCTCATCAACTTCTTTATCCAGTGTTCTGGCTGCAAAGGCACCGTGCGCATCGAGATGTTCCGGAACATGCAGAACGCTGAGATCATCAGGAAGATGACAGAGGAGTTTGACGAGGACAGTGGGGACTACCCTCTCACCATGCCCGGGCCGCTGTGGAAGAAGTTCCGCTACAACTTCTGTGAGTTCATCTGCGTATTGATACGTCAGTGCCAGTACAGCATCATCTACGATGAGTACCTCATGGACACGGTCATATCCCTCCTCACGGGACTATCTGACTCACAGGTCAGAGCTTTCAGACACACCAGCACACTGGCAGCGATGAAGTTGATGACAGCGTTGGTGAACGTGGCGTTGAACCTCAGTATCCACCAGGACAACACCCAGAGACAGTATGAGGCTGAGAGGAACAAGATGGCCGGAAAACGAGCCAATGAGAAGCTAGAGCTGCTGCTGCAGAAGAGGAAGGAGCTCCAGGAGAACCAGGATGAGATTGAGAACATGATGAACTCTATCTTCAAAGGCATCTTTGTCCACcgctacagGGATGCTATAGCTGAGATCAGAGCTATCTGTATTGAGGAGATTGGAGTTTGGATGAAGATGTACTCTGACGCCTTCCTCAACGACAGCTACCTGAAATATGTAGGATGGACCTTACACGACCGGCAAGGTGAGGTCCGTCTGAAGTGTCTGAAGGCTCTCCAGAACCTGTACACCAACAGAGAACTGTTTCCTAAACTGGAGCTGTTCACCAACCGCTTCAAGGACCGCATCGTGTCCATGACTCTGGATAAGGAGTATGACGTGGCTGTGGAGGCTATTAGACTGATCACTCTCATCCTGCAGGGCAGCGAGGATGCGTTGTCCAATGAGGACTGCGAGAATGTCTACCACCTGGTTTACTCCGCCCACAGACCTGTCGCCGTGGCAGCAGGAGAGTTTCTGCACAGGAAGTTGTTCAGCAGACATGACCCCCAGGCAGAGGAGGAGTTGgctaagaggagagggaggagcagcCCCAACGGGAACCTCCTCCGCATGCTGGTGCTTTTCTTCTTGGAGAGTGAGCTTCATGAACATGCAGCCTATCTGGTGGACTCTCTGTGGGAGAGTTCTCAGGAGCTGCTGAAGGACTGGGAGTGTATGACTGAGTTACTGCTGGAGGAGCCTGTacaaggagaggaggTgctgtcagacagacaggagagttCCCTGATAGAGTTGATGGTGTGTACCATCCGGCAGGCAGCAGAGGCTCACCCACCCGTCGGCAGGGGCACTGGGAAGCGTGTTCTCACGGCGAAGGAGAGGAAGACTCAGATAGACGACAAGAACAAACTGACAGAACACTTCATCATGGCCCTGCCCATGCTCCTGTCTAAGTACCAGGCTGACTCTGAGAAGGTGGCTAACCTGCTACAGATCCCTATGTTCTTTGATCTGGACGTGTACAGCGCTGGGCGTATGGAGAagcacCTAGATGCCTTACTGAAGCAGATCCGCCTGGTGGTGGAGAAACACATTGAGACAGATGTTCTGGAGGCCTGCAGTAAGACCTACAGCATCCTGTGTTCTGAGGAGTACACCATCATGAACAGAGTGGACATCGCCCGCTCGCAACTCATCGACGAGATAACGGACCGCTTCACACACTCCGTAGAAGACCTGCTGCAAGAGGCCGAGGAGGCCGACGATGACGACATCTACAACGTTCTGTCTACCCTCAAGAGACTCACGGCCTTCCACAAtgCTCATGACCTGACGCGGTGGGACCTGTTTGGTAGCTGCTacaggttgttgaaggctggTATTGAGCAGGGGGCCATGCCAGAGCAGATCGCtgtccaggccctgcagtgttcCCACTACTCCATACTGTGGCAGCTGGTGAAAATCACAGAGGGAACTCCTAGTAAGGAGGACCTGGTGGCTCTGAGGAGAGTGGTGAAGTCCTTCCTGGCTGTCTGTCAGCAGTGTCTGTCCAATGTCAACACACCTGTCAAAGAACAGGCCTTCATGTTGTTGTGTGACCTGCTGATGGTCTTCAGTCACCAGTTGGTGTCTGGGGGCAGAGAAGGACTGGAGGCCCTGGTGTTCAACCCAGACAGCACCTTACAGAACGAGCTGCTCACCTTCATCCTGGACCACGTCTTTATAGACCAGGACGATGAGAACCAGAGCAtggAAGGCGACGAGGAGGATGAAGCCAATAAGATAGAAGCCCTTCACAAGAGGAGAAACCTGCTCGCAGCCTTCAGCAAACTCATCATCTATGACATCGTGGACATGCCTGCTGCTGCAGACATCTTCAAACACTACATGAAGtATTATAATGACTATGGTGATATCATCAAGGAGACTCTCAGTAAGACCAGACAGAGTGATAAGATCCTCTGTGCCAAAACCCTCATCCTCAGTCTGCAACAGCTGTTCAACGAGcttctccaggaccagggtcCTACTCTGGACAGAACATCGTCTCACGTCAGCGGCATCAAGGAGTTGGCCCGGCGCTTCGCCCTCACCTTCGGCCTGGACCAGATCAAAACCAGAGAGGCTGTCGCTACGCTGCACAAGGATGGTATAGAGTTTGCCTTTAAGTACCAGAACCCCCATGGTGCAGAGTTCCCTCCTCCTAACCTGGCCTTCCTAGAGGTCCTCTCAGAGTTCTCCTCCAAACTGCTGCGACAGGACAAGAAGACTGTtCACTCGTATCTGGAGAAGTTTATGTCGGAGTCGATGTCGGAGCGTCGTGAGGACGTGTGGCTGCCCTTAATCTCCTACCGGAACAGTCTGCtaacaggaggagaggatggggaccGGATGTCGGTAACGTCAGGCGCCAGCAGCAAGACCAGCTCCATCCGCAGCAAGAAGGGACGGACGCCAATACACAAGAGTAAACGCATCGAGGAGGAGAGTAGTGTGGAGGCCTCCTGGCTTCGTGGTAATGACAACCTCCAGACACCGGGGGCGCTAACCACCCCTCAGCTCACCTCCACCGTCCTCAGAGAAAACCCACGGCAGGCGGCGGACACACACCTACCTGACCACGACTCTGAACCTGGCTCAGAGAACGACTATGTACacaaTCCCCAGATGCAGATGTCTTGGCTAGGCCAACAGAAGATGGAGGACAGCAGGAAGGATAGAACAGCCATGAACTACATGAAGGCCCGCAACCAGACTGTCAGACAAACTGTtcgtggtctGATGGAGGATGACGCAGAGCCAATCTTTGAGGACGTCATGATGTCATCGCGAGGTCAACTGGAGGACATGAACGAGGAGTTCGAAGACACCATGGTCATCGACCTGCCTCCCTCCAGGAACAGACGTGAGAGGGCGGAGCTCAGACCAGACTTCTTCGACTCAGCAGCCATGATCGAGGACGAGTCGggtttcaccatgccTATGTTCTGATCCAGTGTTCCCAGTCCTTCCTGGAAGGGGGAGGGGCCTTCGACAGGATGAGCTGTCAATCAAACGTCAGACTGTCTGTCAGAACTTTTATCACACACACTTGATCAGCCAGTTGacggccttgtgtgtgtgtgtggatctgttgggatcTACCCTGAAGCTCCAGGGATCCACTCACTGGCCGGCCGAAGGATCCCACTCAACCCTGAGAATTTCGGACAAAATATCGTACAGAGTATCTATCGTACATAGAGAAGATCTTTTATCGTTCAGTGGACGTGTGGGTGTGTTGGCTACAAACCGGACAGAATATCGGACAAAAAATCGTACAAAACAATGTTCCACATTTCTTTAAAAATATTGTAAACTTTCGGCCCTTCCTTCCTGACTTGTTTTAACTTCCTGTTATTGTTAGCGTTCTGGCTAATCTCTCCGCTAGCTCTGTGGTACTCATGGCCCTGTGCGCCCGGCTATACAGTCCCCCATGCCACACAGTTGTATGGTTGTTTCGTTCCACTTCCGACGTCAtgtatagacccccccccccccccccccccccccagatggaACTTGATATTTAATGTGATAAATCTTTACTCTTTCATTTATATTTACTCTctcactcctgtctctctttactctctcttccctttcgATAGTGTTGAGAATATCCTGTATTTGGTTTTATTGGCAAAtgcaccaaacagcaagcaatgggACCAGAACTAGAAGAGTTCTCATTGGCCATACAAGAGGCTGTGACATCATAGCCAAATCCCAAGCCATTCCCCGTCAGAGcttcagacagacacacccacGGTGGAATCGCGGCTTTTTAAAAacgttttaaaaataaatatattttgaatttcaGTAGCTTTAGTACAAAGTTTTAAATCAAgtgagtttttatttttttttgtctgatttGTTTGTACAGTTATCTTTCTGAAAAAGTATCTTGTTTGTTGCCAAACGGTTGCCTAAATGCTTATATCTGATTAGGCCCTACTGCTCAGGCTGTTGCCATGGATACCCAGCCTGTTAAGCGCCATATAAGGGTGTGTCCAGTGCGACCATAGTTGTGCAGGCTCAACAGTCTAAAGTGACTTCCTCTCCCATCTGCACTGATGAGGAAGACCTGGACAGGTAACTGCTAATATCCAGTAGCCTTCTACCATATTCATTTCACCTGTCCTCTTTTCAGATCAGTGCACATGAAGGTGGAGACCAGCAGAGAATACCCCTCTAGTCTTATGTGGCTGTAGTTACACATAACAGTTGATTGGTTGTCTTATCACTTTGACCCACCCCTATTGTTCTTCTACTGGCTGGTTAAGCTGCCCTTCTGTAAATATCAGAGATGATTGGTTCTTTCTGTAGCGATGGCATCACCTGCCCTTTAACCTTCTAAaatactgttttttttcttcctgtgAACTTGTTGCTCTTatcttttttaaataaataaaatctgtaATCTAA

Function

NR:

description
PREDICTED: cohesin subunit SA-1

GO: NA

KEGG:

id description
K06671 STAG1_2, SCC3, IRR1; cohesin complex subunit SA-1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952116.1 False 4211 mRNA 0.54 26 18176721 18222655
XM_036952115.1 True 5274 mRNA 0.51 25 18194591 18224140

Neighbor

gene id symbol gene type direction distance location
LOC110495710 LOC106574671 coding upstream 18220 18156850 ~ 18158501 (+)
LOC110495707 LOC106574672 coding upstream 31240 18143136 ~ 18145481 (+)
LOC110495694 LOC106575448 coding upstream 39782 18129571 ~ 18136939 (+)
atr atr coding upstream 47358 18097563 ~ 18129363 (+)
LOC110495693 LOC105019803 coding upstream 82731 18076200 ~ 18093990 (+)
LOC110497069 ppp2r3a coding downstream 27598 18251738 ~ 18305237 (+)
LOC110495706 LOC105019796 coding downstream 85841 18309981 ~ 18432516 (+)
LOC110497071 LOC106574566 coding downstream 224294 18448434 ~ 18480492 (+)
tspan37 LOC106574474 coding downstream 256637 18480777 ~ 18484626 (+)
elavl1a LOC106574475 coding downstream 264582 18488722 ~ 18498859 (+)
G1522544 NA non-coding upstream 154440 18022058 ~ 18022281 (+)
G1522487 NA non-coding upstream 236010 17938478 ~ 17940711 (+)
G1522466 LOC100534484 non-coding upstream 243440 17921980 ~ 17933281 (+)
G1522498 LOC106575464 non-coding upstream 255628 17920084 ~ 17921093 (+)
G1522563 NA non-coding downstream 642 18224782 ~ 18231387 (+)
G1522601 LOC106575419 non-coding downstream 7750 18231890 ~ 18236181 (+)
G1522604 NA non-coding downstream 15769 18239909 ~ 18241184 (+)
G1522605 NA non-coding downstream 17124 18241264 ~ 18242350 (+)
G1522606 NA non-coding downstream 20155 18244295 ~ 18244526 (+)
G1522438 NA other upstream 316107 17856141 ~ 17860614 (+)
G1522437 LOC106575479 other upstream 332707 17839669 ~ 17844014 (+)
G1522415 LOC106575491 other upstream 410027 17766219 ~ 17766694 (+)
LOC110527374 LOC106592210 other upstream 549077 17623786 ~ 17631132 (+)
LOC110495674 LOC106575504 other upstream 1708298 16454118 ~ 16468453 (+)
G1522684 NA other downstream 154947 18379087 ~ 18380258 (+)
LOC110495728 LOC106574584 other downstream 370194 18594324 ~ 18595682 (+)
LOC118936474 LOC106574488 other downstream 491722 18702289 ~ 18722091 (+)
LOC110495746 LOC106574508 other downstream 735304 18959384 ~ 18978475 (+)
G1523506 NA other downstream 797865 19022005 ~ 19022395 (+)

Expression


Co-expression Network