LOC110497072 (LOC106574477)


Basic Information

Item Value
gene id LOC110497072
gene name LOC106574477
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18499826 ~ 18513863 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951415.1
ATGGTCTCTGTGACGGTTTGGGCATACATCAAGGGCTACTGTAAACGCAACGGGCTGCTGACGCTCTCGGTCATCGCCGTGGTTTCCGGCTGTGTGCTCGGATTCTCCCTCCGCAGCTTCAACCTTTCCACGCAGGCTAAGATCTACTTCTCGTTCCCTGGAGAACTGCTGATGAGGATGTTGAAGATGCTGATCCTGCCTCTCATCACGTCCAGTCTGATGTCGGGGCTGTCAGCCATGGACACTAAGGCCAGCGGGCGGCTGGGGGTGCTAACCATCACTTACTACCTGTGGACCACCTTCATCGCTGTCATCGTCGGCATCATCCTGGTGCTGGTCATCCACCCTGGTACGGGCACAGAGAAGGACGGGCACAGAGGAGGGTCAGGGCCCGTTATGACTTCTGCTGACGCTCTGCTGGACCTCATCAGGAACATGATTCCCTCCAATCTGATAGAGGCAACTTTTCAACAGTACCGTACAGACCTGGTGCCCATAGTGGCCTCCAGTTTGGTGGAGTCCCAGGCCAACTACGTCTACGTGATGCCCGACCACAACAACCCTCAGCTGGGCCACCCGGTCTTCCTGGAGATCACCCCAGCTCCAGACATCAAGTACAAGATCGTCCCTGGCCACAGCTCTGGCATGAACGTACTGGGGATTGTCATCTTCTCTGCTACTATggGTTTGCTCCTGGGGAAGATGGGTGAGAGAGGCGCTCCATTGGTcaatgtgtgtcagtgtgtcaacGAGTGTGTTATGAAGATCATCAATGCTGCCATGTGGTATTTCCCTTTCGGCATTGTGTTCCTGGTAGCAGGGAAGATCCTGGACATGCATGACCCCGCCCACCTGGGAGAGAAGCTGGGGATGTACTTCATCACAGTGTTAGCCGGCCTGTTTGTCCACGGACTCATCCTGCTGCCGTTCTTCTACTTTGTGATCACACGCAAAAACCCCTTCACCTACATCAGAGGCCTGCTACAGGCTCTGGTCATCGCCCTGGCAACCTCCTCCAGTTCTGCCACCCTGCCCATCACCATGAAGTGTCTGTTGGAGAACTGTGGAGTGGACAGACAGATCGCCAGGTTTGTCCTTCCAGTGGGAGCCACCATCAACATGGATGGGACAGCCCTCTACGAGGCCGTGGCAGCCATTTTTATCGCTCAGGTCAACGAGTACGAACTGGACTTTGGTCAGCTGGTCACCATCAGTATCACAGCGACAGCGGCCAGTATCGGGGCTGCTGGGATTCCGCAGGCAGGCCTGGTTACCATGGTGATTGTCTTGACCTCTGTGGGGCTTCCTCCCGCTGACATCACACTGATCGTGGCCATCGACTGGGTCCTGGATCGTTTCAGGACCATGATCAATGTGTTGGGAGACGCTCTGGCTGCAGGCATCATGTGTCACCTCTGTAAGAAGGACTTTGAGAGGAGGGAGTCAAACGCTAACTCTGCCCGGAGGGACACAGTGATCTCCTTCGGTGGCCAGAGTGTCCAGAGTTGTGCCCTGTCCGAGGCTCCTCTCATGGACTATGCCCATCGCTGTGACTATGTCTACGAGGTGGAAGGTGACTGTGTCACAGAGAAATCTGGCCCCACTTACAACCTGTGTCAGGTTTAGGAGAAACCCGTTCCCTGTTACAATCTGTGACCTTTGTTACAAAGAAACCGGTCCCCGGCTGCAACCTGTATCACAGAGAAACCGGTCCCCTTCTACATGCAGTGTCACAAACAAACCCGTCCCCTGCTACAACCTGCGTCACAGACAAACTCTGTTTGGTCTGAGACACTTTCACTGGACAGACAGCAGGGGGCACTGCCCGCCTTCAACAGAGACCTTTCTATTCACATGAATATACGTAGAGTTGTCCTGATATCAATGGCTATGGACTGGGGAATTACAATAGGACTGGGAAACAACCCTGCACTGAAAAAGAGTTTGCACTTTTCTGATGTGGATTTATCAGGAGTTGACTATAATGTCCTCTGATGGATCAGTTGATGACTGATGGTGTGCTCACACCACTAAGTCACTTTGGTTAGTGTCTGGTAAATGTTCAACGTTTTACTGTCTGATGATCACACCTGTGCCATGATGaggaagcaggttttcctcatcATTTTGTGACTGGCTGTCTAGGCTACTGTAACCTACCAGTGACACGGACTTATACAATAGGTCCACTAGGGTACATGTTATGTCCGAGTCAGTTTTCCTTCTTTAGCTCAATGCAGATTCTGCTCAGGACACCATTTTGGTGCCACAATGTACTGCAGTACAGCACATTTTCTAGGCAACCAGGTGGCATTATGGACACCATTGTGGTTCAATGTACTGGGGACTGTAAAGATAGATGGCAAGAACTTTCAGAGTTTTTTGAAACCTTGTTTGGTATCAGAATGGCTATAGATACTTGCATGAAGATACAATGTTTTAGGACAGGagtattcaactctgaccctatgAGGTCCAGAGCCAGCAGGCTTCCTGTTCTACCTGCTAATTAAttacacccacctggtgtcccaggtctaaatcagtccctgattagaggggaacaacgAAGAAAACGCAGTGCAACTAACTTCGagatccagagttgagtttgagggttcTAGAGATATATAACGGTAGTTTAACACACAACTGTGTGTGAATATTCTTTATTTAGTAATAGTTTTTTTAAATGGTTAAACTTAAATGTTGCACttgcacattttttttaattttgcAGTCAGGTTTTGGAGTTGCCTTAAAATGTTCTCAATAACCAGCCACCGTTGCTGAGAATGTTGCAACCGTGAAAGTGCTGAAATTGATAGGACTTTATACTGAAAATGAGTTTAAACATACTATGGGTAAAACCCCTCATCGCTACCTCTTGTCAACTGAACTATAACACATACAGAACGGATAACTGATATTTCAATGTCTTATTGGTAGATTTACAGTAGATTTCACAGTGATGTACATCTTTCAACACCTAGGATCTTGAAGAAACtcctcaaaatgttttttttatagaaATGAAACTTGTGTATATGCAAGATACTTGTAGTTATTTTCTAATCCAATTTGAAGTGTAATGATTTGAG

Function

NR:

description
PREDICTED: excitatory amino acid transporter 5-like

GO:

id name namespace
GO:0006835 dicarboxylic acid transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0017153 sodium molecular_function

KEGG:

id description
K11102 gltP, gltT; proton glutamate symport protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951415.1 True 3101 mRNA 0.49 9 18499826 18513863

Neighbor

gene id symbol gene type direction distance location
ghs-r ghsr coding downstream 52523 18445083 ~ 18447303 (-)
LOC110497068 LOC106574469 coding downstream 261933 18231889 ~ 18237893 (-)
LOC110495699 LOC106574468 coding downstream 268402 18224782 ~ 18231424 (-)
LOC110495700 LOC106594337 coding downstream 332463 18160955 ~ 18167363 (-)
LOC118941107 NA coding downstream 445472 18051980 ~ 18054354 (-)
LOC118941108 LOC106575244 coding upstream 81921 18595784 ~ 18603170 (-)
LOC110495729 LOC106574585 coding upstream 90734 18604597 ~ 18617046 (-)
LOC110497079 LOC106575437 coding upstream 115228 18629091 ~ 18643487 (-)
LOC110495732 LOC106574489 coding upstream 236906 18750769 ~ 18764433 (-)
LOC110495738 LOC106574497 coding upstream 349673 18863536 ~ 18878944 (-)
G1523289 NA non-coding downstream 9935 18488700 ~ 18489891 (-)
G1523160 NA non-coding downstream 181289 18318043 ~ 18318537 (-)
G1523143 NA non-coding downstream 196986 18302502 ~ 18302840 (-)
G1523137 NA non-coding downstream 201844 18296479 ~ 18297982 (-)
G1523102 NA non-coding downstream 241498 18253215 ~ 18258328 (-)
G1523230 NA non-coding upstream 38901 18552764 ~ 18554450 (-)
G1523315 NA non-coding upstream 57206 18571069 ~ 18572942 (-)
G1523291 NA non-coding upstream 61813 18575676 ~ 18579183 (-)
G1523333 NA non-coding upstream 96301 18610164 ~ 18611225 (-)
G1523341 NA non-coding upstream 109606 18623469 ~ 18623969 (-)
G1523149 fndc3b other downstream 63774 18432093 ~ 18436052 (-)
LOC110510546 LOC106575482 other downstream 754928 17719504 ~ 17815003 (-)
LOC118941106 LOC106575483 other downstream 797073 17685551 ~ 17702827 (-)
G1523234 NA other upstream 27282 18541145 ~ 18541711 (-)
G1523241 NA other upstream 48043 18561906 ~ 18567247 (-)
G1524311 NA other upstream 235262 18749125 ~ 18749395 (-)
G1524473 LOC106574589 other upstream 630122 19143985 ~ 19164126 (-)
LOC110495764 LOC106574529 other upstream 1059765 19573628 ~ 19577133 (-)

Expression


Co-expression Network