LOC110495728 (LOC106574584)


Basic Information

Item Value
gene id LOC110495728
gene name LOC106574584
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18594324 ~ 18595682 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571119.2
TAGCCCACTTCACCGGCCCAGTGTTCACCAAGCCCCTGCTAACCACCTGCAGAGGCCCCGCTGTATCTCCATCCCTTCTGGTTGTTTCAGCACCATGGCCAGCATTCTACTGCTTTTCCTCGCCGCCTCCTGCTGCGCATGTCTCTGTCTCGCTGACGGCGACACCTCGTTGGAGTTTGAGACTCGCGCTCTAGAGTTCCCCCACAAATCACAAGAAGAGAAGGATCTGATTGAAGCTTTGCAAGAAGTTCTGGAGAAACTGAAGAACAAACAGATGCCGTTATCAGAAAAGAAGCTCGGCTGGCTGCCGTCGTGTGACGCAGGCGAGCAGTGCGCTGTTCGCAAGGGTGCGCGTGTCGGAACGCTGTGCGGATGTCCGCGTGGGACGACCTGCAACTTCTATGTCCTCAAGTGTTTgtaagaagagaagaagagaacatgataaacagtgtaggtaggggagcagagagaaataggagagagagaccagaagctTTTTCCTCATTCTGTGGATCACATTCAGATGTGGAACGTTCAGACAGAAATATTGTATGTTGAACAGACAtgtctctatctgacatgtaaaGTAAATAGGAATCATATCAGCTTTACTTTCAGTATGTTGCCCTCTCCTGTCCTGAACGTGACCCTGGTGTGTAATGGATGGTTTGTTGTCTAACATAAAGGTGGTATCTCAAATACCAATCTATTCCCTATAATGCACTATTTTGGCTAGTCCTATGTGTCAGTCCTATGTTGCTtcggtcaaaagtattgcactttatagggaatagggtgtcatttaagACACTACCCAACTTGTTCCCTTCAGCTGTGCTCTCTGCTGTCTCGTCTATTTTGACTAAGTACAAAGAAATTCAATGTGATTAATAAAGTCCTtgatttaca
>TU1743460
CACCGGCCCAGTGTTCACCAAGCCCCTGCTAACCACCTGCAGAGGCCCCGCTGTATCTCCATCCCTTCTGGTTGTTTCAGCACCATGGCCAGCATTCTACTGCTTTTCCTCGCCGCCTCCTGCTGCGCATGTCTCTGTCTCGCTGACGGCGACACCTCGTTGGAGTTTGAGACTCGCGCTCTAGAGTTCCCCCACAAATCACAAGAAGAGAAGGATCTGATTGAAGCTTTGCAAGAAGTTCTGGAGAAACTGAAGAACAAACAGATGCCGTTATCAGAAAAGAAGCTCGGCTGGCTGCCGTCGTGTGACGCAGGCGAGCAGTGCGCTGTTCGCAAGGGTGCGCGTGTCGGAACGCTGTGCGGATGTCCGCGTGGGACGACCTGCAACTTCTATGTCCTCAAGTGTTTgtaagaagagaagaagagaacatgataaacagtgtaggtaggggagcagagagaaataggagagagagaccagaagctTTTTCCTCATTCTGTGGATCACATTCAGATGTGGAACGTTCAGACAGAAATATTGTATGTTGAACAGACAtgtctctatctgacatgtaaaGTAAATAGGAATCATATCAGCTTTACTTTCAGTATGTTGCCCTCTCCTGTCCTGAACGTGACCCTGGTGTGTAATGGATGGTTTGTTGTCTAACATAAAGGTGGTATCTCAAATACCAATCTATTCCCTATAATGCACTATTTTGGCTAGTCCTATGTGTCAGTCCTATGTTGCTtcggtcaaaagtattgcactttatagggaatagggtgtcatttaagACACTACCCAACTTGTTCCC

Function

NR:

description
PREDICTED: cocaine- and amphetamine-regulated transcript protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571119.2 False 909 mRNA 0.47 3 18594324 18595682
TU1743460 True 817 TUCP 0.48 3 18594334 18595600

Neighbor

gene id symbol gene type direction distance location
LOC110495727 LOC106574482 coding upstream 7045 18579648 ~ 18587279 (+)
LOC110495726 NA coding upstream 14919 18570751 ~ 18622066 (+)
diras1b LOC106574480 coding upstream 30217 18555555 ~ 18564107 (+)
LOC110495724 LOC106575427 coding upstream 39863 18550040 ~ 18554461 (+)
LOC110495722 NA coding upstream 50300 18541898 ~ 18544024 (+)
LOC110495730 LOC106574487 coding downstream 60832 18651347 ~ 18672724 (+)
LOC110495731 LOC106574488 coding downstream 81443 18677125 ~ 18683346 (+)
LOC118941109 LOC106574488 coding downstream 102790 18698472 ~ 18702836 (+)
LOC118936474 LOC106574488 coding downstream 120117 18702289 ~ 18722091 (+)
LOC110497080 NA coding downstream 144141 18739823 ~ 18741760 (+)
G1522717 NA non-coding upstream 47399 18544664 ~ 18546925 (+)
G1522714 NA non-coding upstream 52622 18541158 ~ 18541702 (+)
G1522725 NA non-coding upstream 92092 18501725 ~ 18502232 (+)
tspan37 LOC106574474 non-coding upstream 109698 18480777 ~ 18484626 (+)
G1522763 NA non-coding downstream 29627 18625309 ~ 18625721 (+)
G1522764 NA non-coding downstream 30472 18626154 ~ 18626430 (+)
G1522765 NA non-coding downstream 30911 18626593 ~ 18626838 (+)
G1523367 NA non-coding downstream 80574 18676256 ~ 18676471 (+)
G1522684 NA other upstream 214066 18379087 ~ 18380258 (+)
G1522438 NA other upstream 733710 17856141 ~ 17860614 (+)
G1522437 LOC106575479 other upstream 750310 17839669 ~ 17844014 (+)
G1522415 LOC106575491 other upstream 827630 17766219 ~ 17766694 (+)
LOC110527374 LOC106592210 other upstream 966680 17623786 ~ 17631132 (+)
LOC110495746 LOC106574508 other downstream 363762 18959384 ~ 18978475 (+)
G1523506 NA other downstream 426323 19022005 ~ 19022395 (+)
G1523526 LOC106574589 other downstream 530582 19101756 ~ 19142175 (+)
LOC118941116 LOC106574589 other downstream 580181 19168683 ~ 19177819 (+)

Expression


Co-expression Network