LOC110495729 (LOC106574585)


Basic Information

Item Value
gene id LOC110495729
gene name LOC106574585
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18604597 ~ 18617046 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952139.1
gagcctgtaagtcagcatttcactgtaaggtctacctgttgtattcagctcacgtgacaaataaactttaatTTGATATGCTAGCCAGCAGATAAAACAAGACATTAGGGACAATTGAACCAAATATCACAAAATTACTGCATCTATAAAGACCTTAAAAACAGGTTCATGAAGGTACACTGTATTTAGATGGAGACTCACAGAAGTAATCTTCGTCTCTCAGCTCCTCTTCCTCAGTAGAGCTGACTCTGGCTCTGCTGCGAAGGTTCAAGTCCGCCTTCATCACAATAGTCATGGCCTCATAGAGATATATAGTACCTATAACCAGCATGGCCAAGTGGTTCCTcttcatgtttctgtaggctttTTCTCCCATTCGGCCAAACTGGTCCATTTGCTCTGGAAAAATACACCATCTCCTCACAGTCATCCTAAGAGTTAGCACAAGACAGGTgtgcacacagacacaaagagCAGGGCCTAATTAACTTAATAAGCACCAAGACATCTGAGCACCAAGACATCTGAAAACAAATTGACGTTGGTGCTACATGTTAAAGTTAGGCCTACTGTTGTCCACGTCATCGCTAGAactcacctctccactggtgtAGCACGTGTTCGCCTATCTGTCCTCCGCTGCCTAATAAAGTCCAAACAAACGCAAGTTGAAGCTGGTATTTTACCCGTTGCACTGAATTGCTAAAATCACGTAAAACAAAAAGCATAgataggcctactactgttggtCTACCTCCCCAGCCCAGGCAAACATTTGGGATGTTTTTCTCCCCAACGTTCTGAGAGATATAGCCCACATTTCTGTGGATAAGGCCTAGGACTAGAAAACTCGTGCAAGCAGTAAGACAATTCGAATTGAAAGTTATCGTTGACTGTCTTTCtaacactgtaataacatacGTTTTCTCATATGTTTGGGTGGTGGGTGCCAAGGGATGGCCCAACAGAAGTTTTCTTAATATGTACTTTTCTTGGCAATACAATTGAGCCCTGCAGGTCAGTGACGTAAGCCTAGATTATGATTTAACGTTTTCATAACGGGCTCTAACCCCCATCCTCtggtgtaggatagatgtggttGTCCCTGGAAGCTGATCTGAGGCCAGTTTGAAGTTAGAATGAGCGGTTTAAAGTTAAAATGAGAGGTTTGGTAATCTGATCCCACATCAGCAGAATCCACCCAGGGCGCCGTTAGATACCCATACAGTAACACATCGCATATCGCAGGCTGTTGCGTTTTCTCGGAGGGAGTAGCACTACGCGTAACAGTAGCCATTCTCCCCAACCTACCAGTCTCAGGGGTGTGATGGATAAAGCCTCGCCGACCACAGACAATATCTGCCCGTATCGATGTCTCTGTGTCCCTACCGACACCATCTGGGACATGCCATGAGAAATCAACTGGGTTATTTCTCACGCCGTCTCAATACAGGTGAAAGTGTGGAAACAAGGAATAACGAAAAAGTAGGGTAACACGAGAGTTCGGTTATAGCGCGAATTGACTGCAAGCTGCTGGGTCGAACAGGGCAAAGGACTTGTGCTGTCGAAGTAAAGCATCGGGCAACGGTGTAATACAGTAGGCTAGTTAGTGCGCCATTGACAATCACACCATCACACCGAAAGTGTTTAGGTGAATATCCCAATCACAGGTTTGTGAAATACCAGGATACGGGTTTATCTGGCAGGtacgtttaaaaaatatatattattacaaTAATTGGTCCTGTGTTTCCCGCGGTGTGTGATTACATTAACTGTCACTATTACTAGTTGTTATTAACGCATTTCCTATAATGTCACTGTAGCCGCTGTTATGTTTAAGAATACCTTGGCATCACTGACCCAACTGTCTCAGTTATGTCCTTAGATGAGTGCCAGTAGTGTTTTCAGTTTAATGGTAGTGTAGGTCTAGATCCAGGAAACTATTACATCTGCATAACGGCATGGTTTGTGGGGTACAATTAATGTGATAGGAAGGGAAGAACGCACAGAAACACTGTTTTGAACGCGTCCTTAATTCAAAGGCAAAGTTGCAAGACTGTTGAAGACCAGTAGTGTTCCAGTATGTCTGTGCTCATGTCTCAACCGTTCTGACAATGTTTACATTGACCTGTGCTGTGCTGATGAACTCATGTCTCTCTTCCCAGGGGACTGTGAGGTGCGCATCCACCCCTGACCTACAGGATGCCATCCTCCTGGTGCTGATTTACACAGGAGACTGATGTAGATATCATGGATGAAGAGATCCATGTTTTATCTTCCAACTCATCTTTCGGCAGGAGATCCAACCAGAAGAGGTTTTGAGGCCGCCACCCCCAAGACCTCGCAGGACCCCGCCCCCTTCTctacctccttcccctctccacctctacctgtctcctGATggtttgATGGAGACTTGTAACCAGTTTAATGTCAGCAGGAACAGTAGTAATAAGTGGAGGACTTCTCGCCACAGTCATCCTGCTCTGCATTGTAGCAGTGCTGTGCTACTGCAGGCTCCagTACTACTGCTGTAAGAAACATGAGTCGGAGGTGGACTTGGCTTCCGTGGCTGGAGGAGGTGACGGAacgggaggaagagatggagaagggGATGCTCAAGGGGAGGTTCAGGCTCACTTTGCCTGCAAATCGTGCAGCGCCTCTGGGATGGACAGCCTGGCTGTCACCCCTCTCTGCCTGGAGCCCCTGGAGgtgggCCCTCCCCCCAGCTACTGCCCCACCTGCTCCCCCTTCTGGCTACGCCCAGAACTTAGTGACGAGCTGCACAACGGAACCGAGCGGCTGGGATTCCATACGTATCACTATGACAACCCCGGACTGTGTCAATCACTGCCCCTGTCAGACACGCCGCAGGCGCCCTTCTTTTTGACCCAGCCCGGCCAATCCCCTTTGAGCTACTATAGCCCCGTTGACATCCACCCTAACACACCCTGCAGTAACAGACGCCCCTACAGCACACCGGTttgacacacatggacacacacgcacacactgacgTCACACACGCACTCATACAAACACTCCTTCTCCCAGGGGAAAGAGTCCCAGAGACATCCAGAGTACCACCCATccaggggagagagacacacactgaacCCACAGACGGAGCCTCCTGATCGGGACAGAACCACAGACGGACCCATGTCTGGTGCAGCGGTGTGGAGGTCTGGTCATCTGGTAAACCCTACAGGGGAGGAGATGTTGGGTTTGACTATGGGAGATTACTACAAATGATGGGCGAAGATAGACTGGAACAGCAACACactggtgtttctctctctctctctttctctcgatctgtctttctctccctccttttctatatttttctctccatctctctcctctgcctgaaAGCTGATAATGTGAACGAGGTGACTGACATGAGGGCTATATGTGTTTGTAGGTTTGCTTTACGTCTGGAATGTCTAATCACATTACATTCAACGACTAAAGCTCAAAGATGTATTTTTGTCTTCCAGAGTTTAAAGGAGCAGTATGTCCCTTGTTGACCCCTCTGACCCTTAGgaaaaaaacacatgtcaaatttGCAGTTTTAcacttgatttaaaaaaatatatattattgtaAGGGGATATCCGGATGCATTATATATAATCCTGGCTAAAACAATGCAAACACTTTAGCCAACGAGGGCATCTGTTTGTCCAATTCTATGATGTTTCACTTAGCCCTTACCCTGTCCTTCAAAACACAAAACAGAGATGCTGTACACTCACTAAAAGCTGTTCATTATGACACTTGATAATATAGACAAGTATTGATAAAAGAGATGTTTTACTCTTTTCACACAATGCACTTTCCACTTTTCTcacaggttgtgtcccaaatggcactgtatACCCTATACAGGGCCCATatgggtctggtcaaaagtagtgccctatctaGGGAAcagaatgccatttgggacaacgcCGTGGTCTTCACATCTTGGTCTTCCTCACTTCCCGTTCCTTTTGTGATTCTTTGTTAGAGAGTTGATGGGGAAATGGACATCTGTCTGTTCACGTGTTGATTTACTGGGGGAAAAAACTCAAAAGTTTGTGTTCACTGCTATGtagtcacacactcacacaaagacACTGCAGCCTGTAGTGTGGCAATGAAGTTAACTTTAATATTGAATTCACTAattctataatatatatattttttctgttaAAGGTGGACTATTTCTATTAAAAATGACATCATCATTCACAGCAGGGCAACTTCCTGCTTACAGACTATTTGCACTGTTCGTTGAGACATGCCCATATTGGGAAGAGCCAGTGACAGATTGGAattttgttgttgatgatgtctcTCAACAGGAAGTTGACCCGTGGTGTACGATGATGTCATGTAGCTGAGTCTCCCTTTAAAATGAACTCTGAAGATGAATTCCACGTTTAATGCACAGTGTTCCTTTTTGAAGATAAACCAATATGTGTATCTGC

Function

NR:

description
protein FAM163A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952139.1 True 4490 mRNA 0.46 5 18604597 18617046

Neighbor

gene id symbol gene type direction distance location
LOC118941108 LOC106575244 coding downstream 1427 18595784 ~ 18603170 (-)
LOC110497072 LOC106574477 coding downstream 90734 18499826 ~ 18513863 (-)
ghs-r ghsr coding downstream 157294 18445083 ~ 18447303 (-)
LOC110497068 LOC106574469 coding downstream 366704 18231889 ~ 18237893 (-)
LOC110495699 LOC106574468 coding downstream 373173 18224782 ~ 18231424 (-)
LOC110497079 LOC106575437 coding upstream 12045 18629091 ~ 18643487 (-)
LOC110495732 LOC106574489 coding upstream 133723 18750769 ~ 18764433 (-)
LOC110495738 LOC106574497 coding upstream 246490 18863536 ~ 18878944 (-)
LOC110495742 thegl coding upstream 265919 18882965 ~ 18904709 (-)
LOC110495739 LOC106575386 coding upstream 274675 18891721 ~ 18896278 (-)
G1523291 NA non-coding downstream 25414 18575676 ~ 18579183 (-)
G1523315 NA non-coding downstream 31655 18571069 ~ 18572942 (-)
G1523230 NA non-coding downstream 50147 18552764 ~ 18554450 (-)
G1523289 NA non-coding downstream 114706 18488700 ~ 18489891 (-)
G1523160 NA non-coding downstream 286060 18318043 ~ 18318537 (-)
G1523341 NA non-coding upstream 6423 18623469 ~ 18623969 (-)
G1523340 NA non-coding upstream 8117 18625163 ~ 18625642 (-)
G1523342 NA non-coding upstream 9076 18626122 ~ 18626391 (-)
G1523328 NA non-coding upstream 9497 18626543 ~ 18627241 (-)
G1523343 NA non-coding upstream 16258 18633304 ~ 18634541 (-)
G1523241 NA other downstream 37350 18561906 ~ 18567247 (-)
G1523234 NA other downstream 62886 18541145 ~ 18541711 (-)
G1523149 fndc3b other downstream 168545 18432093 ~ 18436052 (-)
LOC118941107 NA other downstream 550772 18051980 ~ 18054354 (-)
G1524311 NA other upstream 132079 18749125 ~ 18749395 (-)
G1524473 LOC106574589 other upstream 526939 19143985 ~ 19164126 (-)
LOC110495764 LOC106574529 other upstream 956582 19573628 ~ 19577133 (-)
G1524755 LOC106581475 other upstream 1105699 19722745 ~ 19730068 (-)
LOC110497093 LOC106574562 other upstream 1954050 20558557 ~ 20595753 (-)

Expression


Co-expression Network