LOC110497079 (LOC106575437)


Basic Information

Item Value
gene id LOC110497079
gene name LOC106575437
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18629091 ~ 18643487 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952140.1
AGCAATCAAATGTTGCAATGTTGAAATGCTCTTCGTTTTCGACGAATCAAGCCGCCCATTATGGCAAAAATAATCATCCTACCATAATGCAGGGGGAACACTAGGTCCCATCCCTGTGATACCAGGAAGCAAGCACCAAAGTGTCGTCGCTATTCAGAATGCCACAGACCAACAAGTCCAGAAGTATCTCGGCCAGTGGCTCTAGTACCGGACCGGACcgaggggaggaaagagaagaagaaagagaggaagctGAGCCAGGGCCAAAGGTCCAAGTCCAGGAAgcaggggatggaggaggagagaacacTGGAGACCCAGAGATCATCAAGTCCCCTAGTGACCCCAAACAGTACAGGTACATCGAGCTGACCAATGGGCTTCGAGTTATGCTAATTTCAGATTTCACTGGTCCCGCCTCCTCTGGAGACGACgaatcagaggaggaggaggaggaactgggggaggaggaagaggaggaagaagactcaggagagggaacagaggaaGAGTCTGAAGAAGATGAAGATGACAATGACAGTGACTTTGAGGATGAcgaggatggagggaagaggaagaagggACACTCAGAGAAACAGtctgcagCAGCGCTGTGTGTGGGTATTGGCAGTTTCAGTGACCCTAATGACCTCCCAGGCCTTGCCCATTTCCTGGAACACAtgGTGTTCATGGGCAGTGAGAAGTACCCATCAGAGAATGGTTTCGATGCCTTCCTGAAGAAACATGGGGGCAGTGACAACGCCTCCACGGACTGTGAGAGAACCGTCTTCCAGTTTGACGTCCAGAGAAAGAAATTCAGAGAGGCTCTGGACAGATGGGCCCAGTTCTTCATCTGTCCTCTGATGATCCGAGACGCCATCGACAGGGAGGTGGAAGCTGTCGACTCTGAGTACCAACTGGCCAAGCCGTCTGACTCTCACAGGAAAGAGATGTTGTTTGGGAGTCTAGCGAAGCCAGGTCACCCCATGGGCAAGTTCTGCTGGGGTAACGCCCAGACTCTGAAGACAGAGCCCAGGAAAAAGAGGATCAATGTTTACAAGAGGCTCCGCTCCTTCTGGAAGAGATATTACTCTGCCCACTACATGACCCTGGCTGTGCAGTCtaaagAGAAGCTGGACACTCTAGAGGAGTGGGTGAAGGAGATCTTCAGTGGAGTGCCCAACAATGCTCAGCCCAAGCCGGACTTCTCTGAACTGCTGGATCCCTTTGATACTCCAGCCTTCAACAAGCTGTACAGAGTTGTTCCTGTGAGGAAGGTCCATGCTCTGACCATCACCTGGTCCCTGCCTCCTCAGGAGAAACACTACAGgGTGAAGCCTCTCCACTACATCTCTTGGCTGATTGGTCACGAGGGCACAGGCAGCATCCTATCAATTCTCAGGAGGAAgtgctggGCCATGGCTCTGTTTGGAGGGAACAGTGAAACAGGCTTTGACCAGAACTCTACCTACTCCattttctccatctccatcacacTCACTGACCAAGGATTCCAGAACTTCTACCAGGTGGCTCACCTGGTCTTCCAGTACCTCAAGATGATGCAGAGCCTGGGCCCCCAACAACGGATCTATGAGGAGATTCAAAAGATTGAAGCCAATGAGTTTCACTACCAGGAACAGACGGACCCTATAGAGTATGTGGAGGATATCTGTGAGAACATGCAGCTGTTTCCTAAAGAACACTTCCTCACCGGAGACCAGCTCATGTTCCAGTATTCACCTGAGgtgatcaGTGCGGCCCTGTCCTTGCTGACTCCAGACAGAGCCAACCTGTTGCTGCTCTCCCCAGACCACGAAGGCCACTGTCCCCTTAGGGAGAAATGGTTTGGGACACACTACAGCGTAGAGgATATCCAGCAGGAGTGGAGAGAGCGCTGGAACGGAGACTTTGAGCACAACTCTGACCTGCACCTCCCTGTGGAGAACAAGTTCAtcgCGACTGATTTCAGCCTGAAGCTGTCTGACTGTCCTGATACTGAGCTGCCAGTCAGAGTAACTGCCAACGACCGAGGATGCCTCTGGTACAAGAAGGACAACAAGTTCAACATAcccaaagcgTACATCCGCTTCCATCTCATCTCTCCGGTCATCCAGCAGTCAGCCAGGAACCTGGTGTTATTTGACCTGCTAGTGAACATACTGGGTCATAACCTAGCAGAGCCAGCCTACGAGGCTGACGTGGCCCAGCTGGACTACAAGCTGTCCGTAGGAGAACACGGACTGGTTATCAAGGTCAAGGGCTTCAACCACAAACTGCCTCTCCTGTTCCATCTGATCCTGGACCATCTGGCTGATTTCTCTGCCTGTCAAGATGTCTTCAATATGTTCTCTGAGCAGCTCAAAAAGGCCTATTTCAACATCCTCATACGACCTGAGAAACTGGGCAAGGACGTGCGGTTGTTGGTCCTGGAGCATGGTCGCTGGTCCATGGTAGAGAAGTACCAGGCGCTGGCAGACGGTGGTCTGACTGTAGAACAACTGATGGAGTTCAGCAGAACCTTCAAGACCCAGCTCTATGCAGAGGGACTGGTGCAGGGGAACTTCACTAGCCAGGAGTCAATCCAATTCCTGCAGTACATCACTGATAAGCTGCAGTTCTCCAAGCTGCCAGCAGAGGTCCCAGTGTTGTTTAGAGTGGTGGAGCTGCCTCTGAAACAGCACGTCTGTAAGGTCAAAGCATTGAACAAGGGAGACGCCAACTCAGAGGTCACAGTCTactaccagtctggtCTGAAAAAcctcagagaacacacactgatggagctgctgGTGATGCACATGGAGGAGCCCTGCTTTGACTTCCTCAGGACAAAAGAGACTCTGGGgtatcATGTTTATCCAACCTGCAGAAACACATCTGGAGTCCTGGGCTTCTCTGTCACGGTGGAAACACAGGCCACCAAGTTCAATACTGAGCTGGTAGAGTTGAAGATAGAGGAGTTTCTGTCTTCCTTTGGAGAGAAGTTGAGTGCTCTGACTGAGAGTGCCTTCAACACACAGgtgacTGCGCTGGTCAAGCTAAAGGAGTGTGAGGACACACACCTGGGAGAGGAGGTGGACAGAAACTGGGCCGAGGTCGCTACACAGCAGTATGTCTTCAACAGGCTTCACAGAGAGattGAGGCCCTGAAGCAGATGACGAGAGCAGAGCTGGTATCCTGGTATCTGGAGCACCGCGGACACAACTGCAGAAAACTCAGTGtacatGTGGTGGGTTTTGGGCCGGAGGAGGGCGACCCCCCAGGAGATGACAAGCAGAGTCGTCATGGCaacggagagagggatgaggaagagTGCGGCAGTTCGTCCTACGGAGAAGTGTCCAAACTGACCTTCCTCCCCGCCTCGCCCAAGATGGCTGCCACTACATCCATCATGGACATTCCTTCATTTACCCAGAGCCTTACCCTCTTCCCATACCACAAGATCATCCAATAGACTACCAATATCTATTTTCTCAATATTTCTTTCAAACTCTCTCTTCTTCATTGCCTGACCATAACATCATCTTATAAACTCAATGAGATACACTA

Function

NR:

description
PREDICTED: nardilysin-like

GO: NA

KEGG:

id description
K01411 NRD1; nardilysin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952140.1 True 3556 mRNA 0.52 32 18629091 18643487

Neighbor

gene id symbol gene type direction distance location
LOC110495729 LOC106574585 coding downstream 12045 18604597 ~ 18617046 (-)
LOC118941108 LOC106575244 coding downstream 25921 18595784 ~ 18603170 (-)
LOC110497072 LOC106574477 coding downstream 115228 18499826 ~ 18513863 (-)
ghs-r ghsr coding downstream 181788 18445083 ~ 18447303 (-)
LOC110497068 LOC106574469 coding downstream 391198 18231889 ~ 18237893 (-)
LOC110495732 LOC106574489 coding upstream 107282 18750769 ~ 18764433 (-)
LOC110495738 LOC106574497 coding upstream 220049 18863536 ~ 18878944 (-)
LOC110495742 thegl coding upstream 239478 18882965 ~ 18904709 (-)
LOC110495739 LOC106575386 coding upstream 248234 18891721 ~ 18896278 (-)
LOC110495741 LOC106574501 coding upstream 254950 18898437 ~ 18902354 (-)
G1523328 NA non-coding downstream 1850 18626543 ~ 18627241 (-)
G1523342 NA non-coding downstream 2700 18626122 ~ 18626391 (-)
G1523340 NA non-coding downstream 3449 18625163 ~ 18625642 (-)
G1523341 NA non-coding downstream 5122 18623469 ~ 18623969 (-)
G1523333 NA non-coding downstream 17866 18610164 ~ 18611225 (-)
G1523347 NA non-coding upstream 1413 18644900 ~ 18645108 (-)
G1523349 NA non-coding upstream 5117 18648604 ~ 18648848 (-)
G1523351 NA non-coding upstream 6485 18649972 ~ 18650178 (-)
G1523352 NA non-coding upstream 7183 18650670 ~ 18650890 (-)
G1523311 LOC106574487 non-coding upstream 25951 18669438 ~ 18672666 (-)
G1523241 NA other downstream 61844 18561906 ~ 18567247 (-)
G1523234 NA other downstream 87380 18541145 ~ 18541711 (-)
G1523149 fndc3b other downstream 193039 18432093 ~ 18436052 (-)
LOC118941107 NA other downstream 575266 18051980 ~ 18054354 (-)
G1524311 NA other upstream 105638 18749125 ~ 18749395 (-)
G1524473 LOC106574589 other upstream 500498 19143985 ~ 19164126 (-)
LOC110495764 LOC106574529 other upstream 930141 19573628 ~ 19577133 (-)
G1524755 LOC106581475 other upstream 1079258 19722745 ~ 19730068 (-)
LOC110497093 LOC106574562 other upstream 1927609 20558557 ~ 20595753 (-)

Expression


Co-expression Network