LOC118936474 (LOC106574488)


Basic Information

Item Value
gene id LOC118936474
gene name LOC106574488
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18702289 ~ 18722091 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952149.1
gagagagagagagagagagggtactgCCGCATAAAATAGTGGACAGTGATATCCACACCATTTCCATGGTTTGGCTGCGTTAGGTGGATTCGACTAAACAATTTGAAAAAATATCAGTGCTTGGATGTGAATTTATCTACACATCACTACCTTTTTGTGGATATAATGCAGTCCTTTTCCTGGATTTACACACAGATCTGGCTCATGATGGTGAAGAGGCGTACGTTCCCTCTACTGATAGCTTCTGCTCTGGCAGTCATGGTCTACGTCATCTTCACATTGCCCAGGTCACAGCCAGGCAACCACCAGCACCTCTATCTGCACCACATCTCTGACCAGTCCATCACGCCTGTCAACGACACCAAACACTTCATGGTGGGGGCCTACAAGGAACATCGTTTGGAGGGAAGCTCCGTACGCATCATCAGTATCTTCAGACGAGACTCTGTCCAGCCTCTGTACTGTGTGTTCTACTGTGGGACTCACTGGGCTAATGGAATGAAGGCTGAAGTCCAGATGCACTCTGATCACTTTGGTTTCCGCTTCGTGACGACCGACGTCCTTTGTCCGAATCATCCCGACTGCGACCCATCACACGTGACCCTCGCCATACAAGCTGACGCCAAGCTCGCTCAGAACCAAACCTTCCTCCGCATCCAGAACCTTGtgaaaagggaggaagaggagtttcAGTTCAACTTCACTGTCTGTTGGTCCAATTTATTTGGCGATTATAACAACGTGCTTCAGGTCACCCAGACTCTGGAGATGTACAAGTTGTTGGGAGTGCAGCATGTTGTGGTGTATAACACCAGCTGTGGACCAGACCTGGAGAGACTGCTACAGAGTTACACACAGGAGGGCTTTGTTGAAGTGGTGCCCTGGCCTATCAACCAACACATGAACCCGTCCAATGGGTGGCAGCCCAGTGAACATGGAGGGGACATCCACTACTATGGCCAGTTGACCACTCTAAATGACTGTGTCTACAGAAATATGTATCAGTCACGCTATGTACTGCTGAACGACATCGATGAGATTATAGCTCCATACCAGCATCAAACCCTGCCCCAGATGATGGATGTACTTCAGAGGCAAAACCCAAAGGCTGAAGTGTTCCTCATAGAGAACCACATCTTCCCTAAGTCCCAGTTTGAGCCCAGTGGAAGATTTGAACGACCAAACTGGCGGGATGTTCCAGGGATCAACATCATGGAGCACATCTACAGAGAGGAGCCAGACTATCGCATCTACCACCCCTCCAAGATGATAGTACGGCCCAGGGCAGTGGAGCAGACGTCGGTCCACTCTGTCTAACAACCCTAGAGCAGT
>XM_036952150.1
gagagagagagagagagagggtactgCCGCATAAAATAGTGGACAGTGATATCCACACCATTTCCATGGTTTGGCTGCGTTAGGTGGATTCGACTAAACAATTTGAAAAAATATCAGTGCTTGGATGTGAATTTATCTACACATCACTACCTTTTTGTGGATATAATGCAGTCCTTTTCCTGGATTTACACACAGATCTGGCTCATGATGGTGAAGAGGCGTACGTTCCCTCTACTGATAGCTTCTGCTCTGGCAGTCATGGTCTACGTCATCTTCACATTGCCCAGGTCACAGCCAGGCAACCACCAGCACCTCTATCTGCACCACATCTCTGACCAGTCCATCACGCCTGTCAACGACACCAAACACTTCATGGTGGGGGCCTACAAGGAACATCGTTTGGAGGGAAGCTCCGTACGCATCATCAGTATCTTCAGACGAGACTCTGTCCAGCCTCTGTACTGTGTGTTCTACTGTGGGACTCACTGGGCTAATGGAATGAAGGCTGAAGTCCAGATGCACTCTGATCACTTTGGTTTCCGCTTCGTGACGACCGACGTCCTTTGTCCGAATCATCCCGACTGCGACCCATCACACGTGACCCTCGCCATACAAGCTGACGCCAAGCTCGCTCAGAACCAAACCTTCCTCCGCATCCAGAACCTTGtgaaaagggaggaagaggagtttcAGTTCAACTTCACTGTCTGTTGGTCCAATTTATTTGGCGATTATAACAACGTGCTTCAGGTCACCCAGACTCTGGAGATGTACAAGTTGTTGGGAGTGCAGCATGTTGTGGTGTATAACACCAGCTGTGGACCAGACCTGGAGAGACTGCTACAGAGTTACACACAGGAGGGCTTTGTTGAAGTGGTGCCCTGGCCTATCAACCAACACATGAACCCGTCCAATGGGTGGCAGCCCAGTGAACATGGAGGGGACATCCACTACTATGGCCAGTTGACCACTCTAAATGACTGTGTCTACAGAAATATGTATCAGTCACGCTATGTACTGCTGAACGACATCGATGAGATTATAGCTCCATACCAGCATCAAACCCTGCCCCAGATGATGGATGTACTTCAGAGGCAAAACCCAAAGGCTGAAGTGTTCCTCATAGAGAACCACATCTTCCCTAAGTCCCAGTTTGAGCCCAGTGGAAGATTTGAACGACCAAACTGGCGGGATGTTCCAGGGATCAACATCATGGAGCACATCTACAGAGAGGAGCCAGACTATCGCATCTACCACCCCTCCAAGATGATAGTACGGCCCAGGTTAGAATCTGCCACCCCTCCCAGATGATAGTACGGCCCAGGGCAGTGGAGCAGACGTCGGTCCACTCTGTGCTGCGTAACTTTGGGCAGACAGTGAAGGTTCCTCCTAACGTGTGTCATATCATCCATGTCAGAGTTCCCCTACAAGGAGGACTGACCAAGAAGGAGCTGCA
>XM_036952146.1
gagagagagagagagagagggtactgCCGCATAAAATAGTGGACAGTGATATCCACACCATTTCCATGGTTTGGCTGCGTTAGGTGGATTCGACTAAACAATTTGAAAAAATATCAGTGCTTGGATGTGAATTTATCTACACATCACTACCTTTTTGTGGATATAATGCAGTCCTTTTCCTGGATTTACACACAGATCTGGCTCATGATGGTGAAGAGGCGTACGTTCCCTCTACTGATAGCTTCTGCTCTGGCAGTCATGGTCTACGTCATCTTCACATTGCCCAGGTCACAGCCAGGCAACCACCAGCACCTCTATCTGCACCACATCTCTGACCAGTCCATCACGCCTGTCAACGACACCAAACACTTCATGGTGGGGGCCTACAAGGAACATCGTTTGGAGGGAAGCTCCGTACGCATCATCAGTATCTTCAGACGAGACTCTGTCCAGCCTCTGTACTGTGTGTTCTACTGTGGGACTCACTGGGCTAATGGAATGAAGGCTGAAGTCCAGATGCACTCTGATCACTTTGGTTTCCGCTTCGTGACGACCGACGTCCTTTGTCCGAATCATCCCGACTGCGACCCATCACACGTGACCCTCGCCATACAAGCTGACGCCAAGCTCGCTCAGAACCAAACCTTCCTCCGCATCCAGAACCTTGtgaaaagggaggaagaggagtttcAGTTCAACTTCACTGTCTGTTGGTCCAATTTATTTGGCGATTATAACAACGTGCTTCAGGTCACCCAGACTCTGGAGATGTACAAGTTGTTGGGAGTGCAGCATGTTGTGGTGTATAACACCAGCTGTGGACCAGACCTGGAGAGACTGCTACAGAGTTACACACAGGAGGGCTTTGTTGAAGTGGTGCCCTGGCCTATCAACCAACACATGAACCCGTCCAATGGGTGGCAGCCCAGTGAACATGGAGGGGACATCCACTACTATGGCCAGTTGACCACTCTAAATGACTGTGTCTACAGAAATATGTATCAGTCACGCTATGTACTGCTGAACGACATCGATGAGATTATAGCTCCATACCAGCATCAAACCCTGCCCCAGATGATGGATGTACTTCAGAGGCAAAACCCAAAGGCTGAAGTGTTCCTCATAGAGAACCACATCTTCCCTAAGTCCCAGTTTGAGCCCAGTGGAAGATTTGAACGACCAAACTGGCGGGATGTTCCAGGGATCAACATCATGGAGCACATCTACAGAGAGGAGCCAGACTATCGCATCTACCACCCCTCCAAGATGATAGTACGGCCCAGGGCAGTGGAGCAGACGTCGGTCCACTCTGTGCTGCGTAACTTTGGGCAGACAGTGAAGGTTCCTCCTAACGTGTGTCATATCATCCATGTCAGAGTTCCCCTACAAGGAGGACTGACCAAGAAGGAGCTGCATGAAGACAAGAGGGTCTGGGACTACGAGAGCCAGCTGGTTCCTAATGTAGATAAAGCATTGGAGAAGGCAGGACTACTGCGCATGTGAATAGATTTGCTTCATCCTGAACCAAACCTGCAGAGAAGTTTAGCCCCACACTTGAACGCTCTTAGGTGTTGCAGACATTGACCCgctatgctgtttactttgtgcCTCTGcttcatatcgctgagtctatcTTTAAGTGTATTACAATTGTAATGAAAGTATgaatagtatttgttttatttatttgattttatctgtacttaaagtaataataataaagcCCCTTTACAATGA
>XM_036952147.1
gagagagagagagagagagggtactgCCGCATAAAATAGTGGACAGTGATATCCACACCATTTCCATGGTTTGGCTGCGTTAGGTGGATTCGACTAAACAATTTGAAAAAATATCAGTGCTTGGATGTGAATTTATCTACACATCACTACCTTTTTGTGGATATAATGCAGTCCTTTTCCTGGATTTACACACAGGTCACCTCAACCTTCACCTTCTATAAACTACCTTTCTAGATCTGGCTCATGATGGTGAAGAGGCGTACGTTCCCTCTACTGATAGCTTCTGCTCTGGCAGTCATGGTCTACGTCATCTTCACATTGCCCAGGTCACAGCCAGGCAACCACCAGCACCTCTATCTGCACCACATCTCTGACCAGTCCATCACGCCTGTCAACGACACCAAACACTTCATGGTGGGGGCCTACAAGGAACATCGTTTGGAGGGAAGCTCCGTACGCATCATCAGTATCTTCAGACGAGACTCTGTCCAGCCTCTGTACTGTGTGTTCTACTGTGGGACTCACTGGGCTAATGGAATGAAGGCTGAAGTCCAGATGCACTCTGATCACTTTGGTTTCCGCTTCGTGACGACCGACGTCCTTTGTCCGAATCATCCCGACTGCGACCCATCACACGTGACCCTCGCCATACAAGCTGACGCCAAGCTCGCTCAGAACCAAACCTTCCTCCGCATCCAGAACCTTGtgaaaagggaggaagaggagtttcAGTTCAACTTCACTGTCTGTTGGTCCAATTTATTTGGCGATTATAACAACGTGCTTCAGGTCACCCAGACTCTGGAGATGTACAAGTTGTTGGGAGTGCAGCATGTTGTGGTGTATAACACCAGCTGTGGACCAGACCTGGAGAGACTGCTACAGAGTTACACACAGGAGGGCTTTGTTGAAGTGGTGCCCTGGCCTATCAACCAACACATGAACCCGTCCAATGGGTGGCAGCCCAGTGAACATGGAGGGGACATCCACTACTATGGCCAGTTGACCACTCTAAATGACTGTGTCTACAGAAATATGTATCAGTCACGCTATGTACTGCTGAACGACATCGATGAGATTATAGCTCCATACCAGCATCAAACCCTGCCCCAGATGATGGATGTACTTCAGAGGCAAAACCCAAAGGCTGAAGTGTTCCTCATAGAGAACCACATCTTCCCTAAGTCCCAGTTTGAGCCCAGTGGAAGATTTGAACGACCAAACTGGCGGGATGTTCCAGGGATCAACATCATGGAGCACATCTACAGAGAGGAGCCAGACTATCGCATCTACCACCCCTCCAAGATGATAGTACGGCCCAGGGCAGTGGAGCAGACGTCGGTCCACTCTGTGCTGCGTAACTTTGGGCAGACAGTGAAGGTTCCTCCTAACGTGTGTCATATCATCCATGTCAGAGTTCCCCTACAAGGAGGACTGACCAAGAAGGAGCTGCATGAAGACAAGAGGGTCTGGGACTACGAGAGCCAGCTGGTTCCTAATGTAGATAAAGCATTGGAGAAGGCAGGACTACTGCGCATGTGAATAGATTTGCTTCATCCTGAACCAAACCTGCAGAGAAGTTTAGCCCCACACTTGAACGCTCTTAGGTGTTGCAGACATTGACCCgctatgctgtttactttgtgcCTCTGcttcatatcgctgagtctatcTTTAAGTGTATTACAATTGTAATGAAAGTATgaatagtatttgttttatttatttgattttatctgtacttaaagtaataataataaagcCCCTTTACAATGA
>XM_036952148.1
gagagagagagagagagagggtactgCCGCATAAAATAGTGGACAGTGATATCCACACCATTTCCATGGTTTGGCTGCGTTAGGTGGATTCGACTAAACAATTTGAAAAAATATCAGTGCTTGGATGTGAATTTATCTACACATCACTACCTTTTTGTGGATATAATGCAGTCCTTTTCCTGGATTTACACACAGATCTGGCTCATGATGGTGAAGAGGCGTACGTTCCCTCTACTGATAGCTTCTGCTCTGGCAGTCATGGTCTACGTCATCTTCACATTGCCCAGGTCACAGCCAGGCAACCACCAGCACCTCTATCTGCACCACATCTCTGACCAGTCCATCACGCCTGTCAACGACACCAAACACTTCATGGTGGGGGCCTACAAGGAACATCGTTTGGAGGGAAGCTCCGTACGCATCATCAGTATCTTCAGACGAGACTCTGTCCAGCCTCTGTACTGTGTGTTCTACTGTGGGACTCACTGGGCTAATGGAATGAAGGCTGAAGTCCAGATGCACTCTGATCACTTTGGTTTCCGCTTCGTGACGACCGACGTCCTTTGTCCGAATCATCCCGACTGCGACCCATCACACGTGACCCTCGCCATACAAGCTGACGCCAAGCTCGCTCAGAACCAAACCTTCCTCCGCATCCAGAACCTTGtgaaaagggaggaagaggagtttcAGTTCAACTTCACTGTCTGTTGGTCCAATTTATTTGGCGATTATAACAACGTGCTTCAGGTCACCCAGACTCTGGAGATGTACAAGTTGTTGGGAGTGCAGCATGTTGTGGTGTATAACACCAGCTGTGGACCAGACCTGGAGAGACTGCTACAGAGTTACACACAGGAGGGCTTTGTTGAAGTGGTGCCCTGGCCTATCAACCAACACATGAACCCGTCCAATGGGTGGCAGCCCAGTGAACATGGAGGGGACATCCACTACTATGGCCAGTTGACCACTCTAAATGACTGTGTCTACAGAAATATGTATCAGTCACGCTATGTACTGCTGAACGACATCGATGAGATTATAGCTCCATACCAGCATCAAACCCTGCCCCAGATGATGGATGTACTTCAGAGGCAAAACCCAAAGGCTGAAGTGTTCCTCATAGAGAACCACATCTTCCCTAAGTCCCAGTTTGAGCCCAGTGGAAGATTTGAACGACCAAACTGGCGGGATGTTCCAGGGATCAACATCATGGAGCACATCTACAGAGAGGAGCCAGACTATCGCATCTACCACCCCTCCAAGATGATAGTACGGCCCAGAGTTCCCCTACAAGGAGGACTGACCAAGAAGGAGCTGCATGAAGACAAGAGGGTCTGGGACTACGAGAGCCAGCTGGTTCCTAATGTAGATAAAGCATTGGAGAAGGCAGGACTACTGCGCATGTGAATAGATTTGCTTCATCCTGAACCAAACCTGCAGAGAAGTTTAGCCCCACACTTGAACGCTCTTAGGTGTTGCAGACATTGACCCgctatgctgtttactttgtgcCTCTGcttcatatcgctgagtctatcTTTAAGTGTATTACAATTGTAATGAAAGTATgaatagtatttgttttatttatttgattttatctgtacttaaagtaataataataaagcCCCTTTACAATGA
>TU1744249
CTGTCTAACAACCCTTCTGTGTCTCTGACCCCAGGGCAGTGGAGCAGACGTCGGTCCACTCTGTCTAACAACCCTTCTGTGTCTCTGACCGCAGGGCAGTGGAGCAGACGTCGGTCCACTCTGTCTAACAACCCTTCTGTGTCTCTGACCGCAGGGCAGTGGAGCAGACGTCGGTCCACTCTGTGCTGCGTAACTTTGGGCAGACAGTGAAGGTTCCTCCTAACGTGTGTCATATCATCCATGTCAGAGTTCCCCTACAAGGAGGACTGACCAAGAAGGAGCTGCATGAAGACAAGAGGGTCTGGGACTACGAGAGCCAGCTGGTTCCTAATGTAGATAAAGCATTGGAGAAGGCAGGACTACTGCGCATGTGAATAGATTTGCTTCATCCTGAACCAAACCTGCAGAGAAGTTTAGCCCCACACTTGAACGCTCTTAGGTGTTGCAGACATTGACCCgctatgctgtttactttgtgcCTCTGcttcatatcgctgagtctatcTTTAAGTGTATTACAATTGTAATGAAAGTATgaatagtatttgttttatttatttgattttatctgtacttaaagtaataataataaagcCCCTTTACAATGAGTAGGATTGACTGTGCTTTGTGTACTTTTTAAAGTGTACTTCAAT
>TU1744253
CCATGGTTTGGCTGCGTTAGGTGGATTCGACTAAACAATTTGAAAAAATATCAGTGCTTGGATGTGAATTTATCTACACATCACTACCTTTTTGTGGATATAATGCAGTCCTTTTCCTGGATTTACACACAGGCTTTTCCTCTTTGCAAAATGCACCAGTTTGCGATGTGACGTTGAGCAGGAAACACGCAAATGAGATGTTCCCCACACCGTTATGGAAATGTGTTTCTCCAATTACAGTACAGCTTCTACGCAGTCACCTCAACCTTCACCTTCTATAAACTACCTTTCTAGATCTGGCTCATGATGGTGAAGAGGCGTACGTTCCCTCTACTGATAGCTTCTGCTCTGGCAGTCATGGTCTACGTCATCTTCACATTGCCCAGGTCACAGCCAGGCAACCACCAGCACCTCTATCTGCACCACATCTCTGACCAGTCCATCACGCCTGTCAACGACACCAAACACTTCATGGTGGGGGCCTACAAGGAACATCGTTTGGAGGGAAGCTCCGTACGCATCATCAGTATCTTCAGACGAGACTCTGTCCAGCCTCTGTACTGTGTGTTCTACTGTGGGACTCACTGGGCTAATGGAATGAAGGCTGAAGTCCAGATGCACTCTGATCACTTTGGTTTCCGCTTCGTGACGACCGACGTCCTTTGTCCGAATCATCCCGACTGCGACCCATCACACGTGACCCTCGCCATACAAGCTGACGCCAAGCTCGCTCAGAACCAAACCTTCCTCCGCATCCAGAACCTTGtgaaaagggaggaagaggagtttcAGTTCAACTTCACTGTCTGTTGGTCCAATTTATTTGGCGATTATAACAACGTGCTTCAGGTCACCCAGACTCTGGAGATGTACAAGT

Function

NR:

description
uncharacterized protein LOC110495731 isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952149.1 False 1332 mRNA 0.50 8 18715799 18721143
XM_036952150.1 False 1456 mRNA 0.50 8 18715799 18721724
XM_036952146.1 False 1737 mRNA 0.48 8 18715799 18722046
XM_036952147.1 False 1776 mRNA 0.48 8 18715799 18722046
XM_036952148.1 False 1644 mRNA 0.47 8 18715799 18722046
TU1744249 False 653 lncRNA 0.46 2 18702289 18722091
TU1744253 True 877 TUCP 0.48 5 18715862 18718645

Neighbor

gene id symbol gene type direction distance location
LOC118941109 LOC106574488 coding upstream 12963 18698472 ~ 18702836 (+)
LOC110495731 LOC106574488 coding upstream 32453 18677125 ~ 18683346 (+)
LOC110495730 LOC106574487 coding upstream 43075 18651347 ~ 18672724 (+)
LOC110495728 LOC106574584 coding upstream 120117 18594324 ~ 18595682 (+)
LOC110495727 LOC106574482 coding upstream 128520 18579648 ~ 18587279 (+)
LOC110497080 NA coding downstream 17777 18739823 ~ 18741760 (+)
LOC110495733 LOC106574492 coding downstream 54663 18776709 ~ 18784988 (+)
LOC110495734 LOC106574494 coding downstream 70351 18792397 ~ 18799883 (+)
LOC110495735 LOC106574495 coding downstream 84912 18806958 ~ 18842112 (+)
LOC110495737 LOC106574496 coding downstream 120490 18842536 ~ 18852862 (+)
G1523367 NA non-coding upstream 39328 18676256 ~ 18676471 (+)
G1522765 NA non-coding upstream 88961 18626593 ~ 18626838 (+)
G1522764 NA non-coding upstream 89369 18626154 ~ 18626430 (+)
G1522763 NA non-coding upstream 90078 18625309 ~ 18625721 (+)
G1523388 NA non-coding downstream 24184 18746230 ~ 18747146 (+)
G1523390 NA non-coding downstream 27389 18749435 ~ 18749865 (+)
G1523391 NA non-coding downstream 28733 18750779 ~ 18752093 (+)
G1523392 LOC106574489 non-coding downstream 35328 18757374 ~ 18764499 (+)
G1523398 NA non-coding downstream 44018 18766064 ~ 18864014 (+)
G1522684 NA other upstream 335541 18379087 ~ 18380258 (+)
G1522438 NA other upstream 855185 17856141 ~ 17860614 (+)
G1522437 LOC106575479 other upstream 871785 17839669 ~ 17844014 (+)
G1522415 LOC106575491 other upstream 949105 17766219 ~ 17766694 (+)
LOC110495746 LOC106574508 other downstream 237398 18959384 ~ 18978475 (+)
G1523506 NA other downstream 299959 19022005 ~ 19022395 (+)
G1523526 LOC106574589 other downstream 404218 19101756 ~ 19142175 (+)
LOC118941116 LOC106574589 other downstream 453817 19168683 ~ 19177819 (+)
G1523542 NA other downstream 478981 19201027 ~ 19202188 (+)
LOC110495726 NA coding upstream 122884 18570751 ~ 18622066 (+)

Expression


Co-expression Network