LOC110495732 (LOC106574489)


Basic Information

Item Value
gene id LOC110495732
gene name LOC106574489
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18750769 ~ 18764433 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571128.2
ATTGACACTTTCCTGCCATTATGTGGGGGACTTTTATTTAGAGCGTTTCCAAAATTCCGTGACCCGGAAGTATTTTTTTGTGTCGCTGAAGGAGACGTTGATGATAACAGCGCAGCTAACCAGATATTCTGGCTATTAGAACGGCGAAAATAAAGgctcttGTCACTCTGGGGACTCTTGGAActtctctgtgtgtgagagcgtgttGCTGCCTATCTCTACACCTCCTTGGAGGATGACCATGGAAGAGATGAGGATTGAAACCGAGACAAACTCCATGGTCTCCATGACGCTATACGCTGTAATGTACCCCGTTTTTAACGAGCTGGAGAGGATCAACTTGTCAGCTGCCCAGACTCTGAGAGCAGCCTTTATCAAGGCGGAGAGGGAGAACCCAGGCCTAACTCAGGACATCATAATGAAAATTCTGGAGAAGAAAAACGTTCAGATAAACTACACAGAGTCTCTGCTGCGCATGGCTGCAGATGACGTGGAAGagttctTAGTGGACAGGCCAGAGCAGGAGTTCCAGGACCTAAATGAGAAATCCAGAGCTCTGAAACACATCCTCAGTAAGATACCTGACGAGATCAACGACAGGGTACGCTTCCTACAGACAATTAAAGACATCGCCAGTGCTATAAAGGAGCTCCTGGATACAGTCAATAACGTCTTTAAGAAATACCACTACCAGAACCGTAGGGCTCTTGAGCACCAGAAGAAGGAGTTTGTCAAATACTCCAAAAGCTTCAGCGACACCCTCAAAACATACTTCAAAGATGGAAAGGCGATCAACGTGTTCATCAGTGCAAACAGACTGATCCACCAAACCAACCTCATTCTGCAGACCTTCAAGACCGTCATATAGGGTTGCCTTGGAGAGGCCATCCAATCTTCTAACGAAGCAACATTAAAAATGGCATACGATCGGAGAGCACCTTTTTGCCAGATTTAAATGTAAAATAGAGGCTTGTTTTTATCAGACAGTTTTAATTTATACCCTTGAGGTGCGTTCAACAAGGCTGATGTTAGCAGTGAAATACGTCAGCTTTTAaactgttagctaacgttagtgaaTGTTTAATGGCCAAAATCTAGCTGAAGAACTTCAGCATATGTGATAGCTTTTTTAGTTATCCCTAGCTACTGTTTAATTGTTTGAATCTGCATTTAACGTTTGGGGACAGTCTTGTTGATCGGCTGTGACGATACCAGTATGacaatattttttccatggcaaaaatgaaaacatgaGGCAGGCTCAACTCTTTGGTCCTATGAATActtgctgtatgtaaaatattctGTGCTCTATCTTAGAAAATACATGTGACAACATAATGATATTTGTTTCCAACAttggggctgttttcctaaagatgTAAAATCCGCTTTGTGTATGATTATTATTTGtgcatctaactttctcactcatcattattcacgatgcATTCAGGATtttccataatcatggtagcatccacatcaaTTTAGAAGTGTATTCtatgacagtctgcactttaacctcgtaGTCGTTGTATATTTTCAAAGCCGAAGTGCTGCAGTACAGAGCCAAAAATAACAACAGCAAAAATTCACtgttccaatacttttggagctcactgtatctgACCCTGTGTCAGTGTTTAGGGGCAACTTCCTCCTACATCTACTATAGCTTCTTAATCATGCTTTCAGAACGGAAACTGCTTTCACTACCTACTGTGCATCTCAAGTGTCTCCCTCTCTTAAGAGAAAGCAATATAATGTTCTAACCATACTGGGTATGACCTTTCACCTGTGTAGTCTTTGCAGATAAGTGCAGAGGAAGGGGGTGGTGTGAGGAGAGGAAATCTTGTTAGATTATTGAGATGTACCCCTATTCTACTCTCTATTAGAAGACAGAAAACCAAAAGAATTCAAGCACAGAGTTGCTGAATCCCAAATAGACTCCTGGATGAGGGGGTAGGGACGGACTAGGGAGGGATCGATTTGGGATTCACAAAGTAACAttcccacactgtctgtgtgtgtggctacaGAGAGCATgactgaggggagaggagggtttgTAAAAGGAGTCTGTCTAAAGGTTTAAAGATGAAGGGAATGAAATGGCTCCAGGTTGAAGCTGTCTCTGTATTTAAGTGATACTGTATGTCTGGTGGCAAATGTTCAATAAATTGTTTCCTAATGAT

Function

NR:

description
PREDICTED: programmed cell death protein 10-B-like

GO: NA

KEGG:

id description
K18269 PDCD10; programmed cell death protein 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571128.2 True 2198 mRNA 0.42 9 18750769 18764433

Neighbor

gene id symbol gene type direction distance location
LOC110497079 LOC106575437 coding downstream 107282 18629091 ~ 18643487 (-)
LOC110495729 LOC106574585 coding downstream 133723 18604597 ~ 18617046 (-)
LOC118941108 LOC106575244 coding downstream 147599 18595784 ~ 18603170 (-)
LOC110497072 LOC106574477 coding downstream 236906 18499826 ~ 18513863 (-)
ghs-r ghsr coding downstream 303466 18445083 ~ 18447303 (-)
LOC110495738 LOC106574497 coding upstream 99103 18863536 ~ 18878944 (-)
LOC110495742 thegl coding upstream 118532 18882965 ~ 18904709 (-)
LOC110495739 LOC106575386 coding upstream 127288 18891721 ~ 18896278 (-)
LOC110495741 LOC106574501 coding upstream 134004 18898437 ~ 18902354 (-)
LOC110497081 NA coding upstream 141082 18905515 ~ 18907958 (-)
G1524294 NA non-coding downstream 28389 18702824 ~ 18722380 (-)
G1523366 NA non-coding downstream 76386 18673896 ~ 18674383 (-)
G1523311 LOC106574487 non-coding downstream 78103 18669438 ~ 18672666 (-)
G1523352 NA non-coding downstream 99879 18650670 ~ 18650890 (-)
G1523351 NA non-coding downstream 100591 18649972 ~ 18650178 (-)
G1524359 NA non-coding upstream 105413 18869846 ~ 18870073 (-)
G1524360 NA non-coding upstream 105920 18870353 ~ 18870582 (-)
G1524361 NA non-coding upstream 107010 18871443 ~ 18871736 (-)
G1524362 NA non-coding upstream 110202 18874635 ~ 18874874 (-)
G1524363 NA non-coding upstream 110851 18875284 ~ 18875504 (-)
G1524311 NA other downstream 1374 18749125 ~ 18749395 (-)
G1523241 NA other downstream 183522 18561906 ~ 18567247 (-)
G1523234 NA other downstream 209058 18541145 ~ 18541711 (-)
G1523149 fndc3b other downstream 314717 18432093 ~ 18436052 (-)
G1524473 LOC106574589 other upstream 379552 19143985 ~ 19164126 (-)
LOC110495764 LOC106574529 other upstream 809195 19573628 ~ 19577133 (-)
G1524755 LOC106581475 other upstream 958312 19722745 ~ 19730068 (-)
LOC110497093 LOC106574562 other upstream 1806663 20558557 ~ 20595753 (-)
G1527230 NA other upstream 3497623 22262056 ~ 22262462 (-)

Expression


Co-expression Network