LOC110495742 (thegl)


Basic Information

Item Value
gene id LOC110495742
gene name thegl
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18882965 ~ 18904709 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571142.2
aatatGGAGTGCCATAGTGCGCTCAGACTGCACCTGGACGTTCATAAATTTGTTTccctctcggagcgttcagagcgccCACTGGACGCTTTGGctagcagtcaagcacccaagctaactggctaaaggtGGCTAAATTGCTAGCTACTTCAAGACACAAATGAAAGAACACCTAACTCTAACCATTGTACTCGCCATAGCAGAGCAGATTAGGCTttttttcatgttatctagagcgtttgtgactaactgtgctgctggcaacaatttcatagtTTTTTTGCCAACTTCTACCGACCGGTAATTTTCGATGGGTGTTGcacgttcgtaaattcatcagttattcagCGTTCTGGCAcaaacgagagtgctctgaaattggagtagataacCAGAGTTCATTTACGAACGCAcccgagagtgctctgaaatctgaGTAGATTGCCACAATGAATATACAAGCGCACCCCTACTCTGATTTCAGTACCAGAACACAATAACTAGCTAATGAATTTCTGAACGCACAACACCTGTTGGATAGTACAGGTATCAGGAAAAAACgttattaaattgttgccagcagcgcagttacagtcaccaactctCTAGATGACATGAAAACAGCTTAACCTGCTCTGCTAGCGCGAGTTAACTGGGTAGAGTGACGTGTTCTCTCATTTATGTCTGGAAgtaactagcaagctagccaactttagccagttatcTTGGGTGCtcgactgccgttgtgaggtcagaacgctcggatcaaccctaatcctcggccagagcgtcaacTGTGCGCTCTGAATTTTCGAACGAACAATCTGACATTTCTCTAAATTTACGGACGCacagagcgcactctggcactccagagcgaatttacgaacacaccccaAGTTGATCGCGAGGCAGCGGCAGCAGCTCACATATCCATGGCTACCCGGATGGTGCAACTCGCTCAGCCCAAACCCAGTCTGCTCCGATTCCCTGACCGACGGTCAGTCTACTGGCTAGATGAACTCCCACCTGAAAGAAATGGCTCCACCCCCACGTTTGAGTTGACTCCCCACTGGTCCCAGCTGTGTGGCAGGAAGCGGCTTAATTCTGGGTTTGAACAGAGCAGGTTATCTCCCCAATGGGAGGTCAGTGTAGCAGCTTTGAGTGCCTATCCATCCAATAGACTGTGTTCTCTGGCTTTGCCCCGCCTCCCCACCATAGGCTGGGAACCTGACCGCCCCCTACTGGCCTCCctgagcAGAGCGGTGCAGACTGCAGTAGCCAGTCCTAGGGTCTGCCAGTTGGCCTGTCCCAAGCGGAGGCATGGTCTCTATTCGCCCCATTTGTCCAAGACCTCACTGGCACCCCCCCACCCAGCTGCAACCTCCTCCCGACTACAGCTCCTTGCCCTCCCTAAGTCTGACCACCCCCAGTATGCCCAGGACCGTCCAGTCATCTGGCCAGTACCTGGGCCAGTGAGGAAGGCAGTAGCCAGTGAGAGGGTGCAGGTCCTTTCACGGCCCAACCAGCGGAAGGCGCTGTTCCAAGGCTACAACCCGTACACGGTTACCCTAGCTGCACGCTCCGCTAGCGCCTCGCCGCGCCTACAGGAGCTTTGTCTGCCCCTGCCGCGGAAATGCAAGGGCAAATAGACGAATGCATCTCATCTCACACCTCTACAGTACCTCCAGCCGCCTCTTCTTCAGATACTCTGTCTCCTGTACAGCATGTCTATGTCCCTGATCACCACTGCTTCATAATAAAGACCCTCTATGATCTCA
>XM_021571143.2
aatatGGAGTGCCATAGTGCGCTCAGACTGCACCTGGACGTTCATAAATTTGTTTccctctcggagcgttcagagcgccCACTGGACGCTTTGGctagcagtcaagcacccaagctaactggctaaaggtGGCTAAATTGCTAGCTACTTCAAGACACAAATGAAAGAACACCTAACTCTAACCATTGTACTCGCCATAGCAGAGCAGATTAGGCTttttttcatgttatctagagcgtttgtgactaactgtgctgctggcaacaatttcatagtTTTTTTGCCAACTTCTACCGACCGGTAATTTTCGATGGGTGTTGcacgttcgtaaattcatcagttattcagCGTTCTGGCAcaaacgagagtgctctgaaattggagtagataacCAGAGTTCATTTACGAACGCAcccgagagtgctctgaaatctgaGTAGATTGCCACAATGAATATACAAGCGCACCCCTACTCTGATTTCAGTACCAGAACACAATAACTAGCTAATGAATTTCTGAACGCACAACACCTGTTGGATAGTACAGGTATCAGGAAAAAACgttattaaattgttgccagcagcgcagttacagtcaccaactctCTAGATGACATGAAAACAGCTTAACCTGCTCTGCTAGCGCGAGTTAACTGGGTAGAGTGACGTGTTCTCTCATTTATGTCTGGAAgtaactagcaagctagccaactttagccagttatcTTGGGTGCtcgactgccgttgtgaggtcagaacgctcggatcaaccctaatcctcggccagagcgtcaacTGTGCGCTCTGAATTTTCGAACGAACAATCTGACATTTCTCTAAATTTACGGACGCacagagcgcactctggcactccagagcgaatttacgaacacaccccaAGTTGATCGCGAGGCAGCGGCAGCTCACATATCCATGGCTACCCGGATGGTGCAACTCGCTCAGCCCAAACCCAGTCTGCTCCGATTCCCTGACCGACGGTCAGTCTACTGGCTAGATGAACTCCCACCTGAAAGAAATGGCTCCACCCCCACGTTTGAGTTGACTCCCCACTGGTCCCAGCTGTGTGGCAGGAAGCGGCTTAATTCTGGGTTTGAACAGAGCAGGTTATCTCCCCAATGGGAGGTCAGTGTAGCAGCTTTGAGTGCCTATCCATCCAATAGACTGTGTTCTCTGGCTTTGCCCCGCCTCCCCACCATAGGCTGGGAACCTGACCGCCCCCTACTGGCCTCCctgagcAGAGCGGTGCAGACTGCAGTAGCCAGTCCTAGGGTCTGCCAGTTGGCCTGTCCCAAGCGGAGGCATGGTCTCTATTCGCCCCATTTGTCCAAGACCTCACTGGCACCCCCCCACCCAGCTGCAACCTCCTCCCGACTACAGCTCCTTGCCCTCCCTAAGTCTGACCACCCCCAGTATGCCCAGGACCGTCCAGTCATCTGGCCAGTACCTGGGCCAGTGAGGAAGGCAGTAGCCAGTGAGAGGGTGCAGGTCCTTTCACGGCCCAACCAGCGGAAGGCGCTGTTCCAAGGCTACAACCCGTACACGGTTACCCTAGCTGCACGCTCCGCTAGCGCCTCGCCGCGCCTACAGGAGCTTTGTCTGCCCCTGCCGCGGAAATGCAAGGGCAAATAGACGAATGCATCTCATCTCACACCTCTACAGTACCTCCAGCCGCCTCTTCTTCAGATACTCTGTCTCCTGTACAGCATGTCTATGTCCCTGATCACCACTGCTTCATAATAAAGACCCTCTATGATCTCA
>XM_036952158.1
caatatGGAGTGCCATAGTGCGCTCAGACTGCACCTGGACGTTCATAAATTTGTTTccctctcggagcgttcagagcgccCACTGGACGCTTTGGctagcagtcaagcacccaagctaactggctaaaggtGGCTAAATTGCTAGCTACTTCAAGACACAAATGAAAGAACACCTAACTCTAACCATTGTACTCGCCATAGCAGAGCAGATTAGGCTttttttcatgttatctagagcgtttgtgactaactgtgctgctggcaacaatttcatagtTTTTTTGCCAACTTCTACCGACCGGTAATTTTCGATGGGTGTTGcacgttcgtaaattcatcagttattcagCGTTCTGGCAcaaacgagagtgctctgaaattggagtagataacCAGAGTTCATTTACGAACGCAcccgagagtgctctgaaatctgaGTAGATTGCCACAATGAATATACAAGCGCACCCCTACTCTGATTTCAGTACCAGAACACAATAACTAGCTAATGAATTTCTGAACGCACAACACCTGTTGGATAGTACAGGTATCAGGAAAAAACgttattaaattgttgccagcagcgcagttacagtcaccaactctCTAGATGACATGAAAACAGCTTAACCTGCTCTGCTAGCGCGAGTTAACTGGCAGCTCACATATCCATGGCTACCCGGATGGTGCAACTCGCTCAGCCCAAACCCAGTCTGCTCCGATTCCCTGACCGACGGTCAGTCTACTGGCTAGATGAACTCCCACCTGAAAGAAATGGCTCCACCCCCACGTTTGAGTTGACTCCCCACTGGTCCCAGCTGTGTGGCAGGAAGCGGCTTAATTCTGGGTTTGAACAGAGCAGGTTATCTCCCCAATGGGAGGTCAGTGTAGCAGCTTTGAGTGCCTATCCATCCAATAGACTGTGTTCTCTGGCTTTGCCCCGCCTCCCCACCATAGGCTGGGAACCTGACCGCCCCCTACTGGCCTCCctgagcAGAGCGGTGCAGACTGCAGTAGCCAGTCCTAGGGTCTGCCAGTTGGCCTGTCCCAAGCGGAGGCATGGTCTCTATTCGCCCCATTTGTCCAAGACCTCACTGGCACCCCCCCACCCAGCTGCAACCTCCTCCCGACTACAGCTCCTTGCCCTCCCTAAGTCTGACCACCCCCAGTATGCCCAGGACCGTCCAGTCATCTGGCCAGTACCTGGGCCAGTGAGGAAGGCAGTAGCCAGTGAGAGGGTGCAGGTCCTTTCACGGCCCAACCAGCGGAAGGCGCTGTTCCAAGGCTACAACCCGTACACGGTTACCCTAGCTGCACGCTCCGCTAGCGCCTCGCCGCGCCTACAGGAGCTTTGTCTGCCCCTGCCGCGGAAATGCAAGGGCAAATAGACGAATGCATCTCATCTCACACCTCTACAGTACCTCCAGCCGCCTCTTCTTCAGATACTCTGTCTCCTGTACAGCATGTCTATGTCCCTGATCACCACTGCTTCATAATAAAGACCCTCTATGATCTCA
>TU1745332
ATGTCCTCTACAGTGAAGGCCTGTAGGTGGGAGGCGCTGCCCATACGGTTGACTCCTGTGATGTTGAGCGTGTAAGACGTGTAGAGCTTTAAACCCTTTAGGACACAGAGCCACCTTGCCCCTGGAGAGGAGCCATTCACCCCAGGGAGAGAGGACTCTGGGCTGGGGAGAGGATGCACGGAGGTAGGGTAGGGATGGCACTGCTGGATCTCTCCGCCTTTCATACTAGGACATACGGAGAGATTAACTGAGAAAGGGGGATGTTTTGAGCGTCTATAAGCTTCTCTCTCaaactctttctcacacacacacacacaaacaaacagtgtaCCTGTAGGTGGCGATGTACTGTATGGGAAGCTGGGTCTGTGGAGGCTCAGGCCATGAGCAGAGGGCTTTGAAGGGGTAACTGGGAGACCAGCAACGTACctctggaggggagggggggtctgCCAGTGGCATAGGATACACACACTCAGAAGTCACCCCCAAATACActcaggggagagggagagagcagtggaaggggagagagaaaatgggaaAGTAGGAaataggggtggagaggggagggggcgagacagagaaaggaaagaaACAGGGGATGTGGAGATGGAAGGAAATGAGAGAAGATAGCTATTTTTAAGTATTCCAGACAGGTCCTCATTTCTGAGAATGCAGTCTCACCcctttctgctctgttctctcctgATGGAACCGTCAGAACCGTCCCATCGCTGCTGAGTACACCGCTGAGAAGAGtcaccacagcacacacacacagccagaatagaacacacacacaatgctggaCGTACATTCCTCTTATGTTAAGAACAGACAGGCtacagtgactgactgactgactgactgactgactgactgactgactgactgattatttTCCTTCCAGACGGTCAGTCTACTGGCTAGATGAACTCCCACCTGAAAGAAATGGCTCCACCCCCACGTTTGAGTTGACTCCCCACTGGTCCCAGCTGTGTGGCAGGAAGCGGCTTAATTCTGGGTTTGAACAGAGCAGGTTATCTCCCCAATGGGAGGTCAGTGTAGCAGCTTTGAGTGCCTATCCATCCAATAGACTGTGTTCTCTGGCTTTGCCCCGCCTCCCCACCATAGGCTGGGAACCTGACCGCCCCCTACTGGCCTCCctgagcAGAGCGGTGCAGACTGCAGTAGCCAGTCCTAGGGTCTGCCAGTTGGCCTGTCCCAAGCGGAGGCATGGTCTCTATTCGCCCCATTTGTCCAAGACCTCACTGGCACCCCCCCACCCAGCTGCAACCTCCTCCCGACTACAGCTCCTTGCCCTCCCTAAGTCTGACCACCCCCAGTATGCCCAGGACCGTCCAGTCATCTGGCCAGTACCTGGGCCAGTGAGGAAGGCAGTAGCCAGTGAGAGGGTGCAGGTCCTTTCACGGCCCAACCAGCGGAAGGCGCTGTTCCAAGGCTACAACCCGTACACGGTTACCCTAGCTGCACGCTCCGCTAGCGCCTCGCCGCGCCTACAGGAGCTTTGTCTGCCCCTGCCGCGGAAATGCAAGGGCAAATAGACGAATGCATCTCATCTCACACCTCTACAGTACCTCCAGCCGCCTCTTCTTCAGATACTCTGTCTCCTGTACAGCATGTCTATGTCCCTGATCACCACT

Function

symbol description
thegl Orthologous to human THEGL (theg spermatid protein like).

NR:

description
testicular haploid expressed gene protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571142.2 False 1781 mRNA 0.52 8 18882965 18886219
XM_021571143.2 False 1778 mRNA 0.52 8 18882965 18886219
XM_036952158.1 False 1517 mRNA 0.52 8 18882965 18886220
TU1745332 True 1667 lncRNA 0.55 7 18882995 18904709

Neighbor

gene id symbol gene type direction distance location
LOC110495738 LOC106574497 coding downstream 4021 18863536 ~ 18878944 (-)
LOC110495732 LOC106574489 coding downstream 118532 18750769 ~ 18764433 (-)
LOC110497079 LOC106575437 coding downstream 239478 18629091 ~ 18643487 (-)
LOC110495729 LOC106574585 coding downstream 265919 18604597 ~ 18617046 (-)
LOC118941108 LOC106575244 coding downstream 279795 18595784 ~ 18603170 (-)
LOC110495739 LOC106575386 coding upstream 5501 18891721 ~ 18896278 (-)
LOC110495741 LOC106574501 coding upstream 12217 18898437 ~ 18902354 (-)
LOC110497081 NA coding upstream 19295 18905515 ~ 18907958 (-)
crlf1a LOC106575381 coding upstream 22786 18909006 ~ 18915688 (-)
acvr1l LOC106574510 coding upstream 301187 19187407 ~ 19200059 (-)
G1524367 NA non-coding downstream 315 18882028 ~ 18882650 (-)
G1524366 NA non-coding downstream 2153 18880612 ~ 18880812 (-)
G1524364 NA non-coding downstream 4719 18877865 ~ 18878246 (-)
G1524363 NA non-coding downstream 7461 18875284 ~ 18875504 (-)
G1524362 NA non-coding downstream 8091 18874635 ~ 18874874 (-)
G1524393 NA non-coding upstream 59499 18945719 ~ 18948078 (-)
G1524396 NA non-coding upstream 62897 18949117 ~ 18949348 (-)
G1524397 NA non-coding upstream 63314 18949534 ~ 18949771 (-)
G1524398 NA non-coding upstream 65805 18952025 ~ 18952268 (-)
G1524400 NA non-coding upstream 68022 18954242 ~ 18954476 (-)
G1524311 NA other downstream 133570 18749125 ~ 18749395 (-)
G1523241 NA other downstream 315718 18561906 ~ 18567247 (-)
G1523234 NA other downstream 341254 18541145 ~ 18541711 (-)
ghs-r ghsr other downstream 436404 18445083 ~ 18447303 (-)
G1523149 fndc3b other downstream 446913 18432093 ~ 18436052 (-)
G1524473 LOC106574589 other upstream 257765 19143985 ~ 19164126 (-)
LOC110495764 LOC106574529 other upstream 687408 19573628 ~ 19577133 (-)
G1524755 LOC106581475 other upstream 836525 19722745 ~ 19730068 (-)
LOC110497093 LOC106574562 other upstream 1684876 20558557 ~ 20595753 (-)
G1527230 NA other upstream 3375836 22262056 ~ 22262462 (-)
LOC110495751 LOC106574518 coding upstream 417947 19322656 ~ 19384501 (-)
LOC118936284 LOC106574517 coding upstream 449167 19353876 ~ 19373333 (-)

Expression


Co-expression Network