LOC118941110 (LOC106574589)


Basic Information

Item Value
gene id LOC118941110
gene name LOC106574589
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19007827 ~ 19010326 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952171.1
CCACTTCAGGCACAGCTACTGTTGATGGAATGGACAGATCAGCAGCTAAATGCCCTGTCCCAATGCTGCCTCCAAGTCTGCCACGTGTCTTTGACGACAAACTGCCAGGGGCGGCAGTAGAGGGAACCAACAAGTGTCCAGTTGCCAGTGAAACAACCAATGATGTGTCCACTCACCTCAAAGAGGACATGGGAGCTGATCAAAGCCCTCCTGACCCTGCAGCACTGCCTCCAAGCTCGCCATGTATCTGTGACTCTGACCACAAACTGACCAAGGAGGAAAAAGAGGATGTACCCGAGTCCTCCCTTGCCACAGAGATCGCTGTAGGCACATCCATTGTCCAGGGAGAGGACCTGGATAAAAGCCCTGCTCCAAGGCTGCCTCCAAGCTTGTCACACGTTttggacaatgaccataagcagcCAGAGGAGACGATAGAGGAAGCCACTGAGTGCTCAGTCGCCGCAGAGGCATCAGTTGCTAATAGAGAGGATCCATCAGCAGCCACAGGTCTTCCCTTAGTGCTGCCTTCAAGCCTGCAACTTGTCTTTGACAATGACTACAAACTACCAGAGGAGGCAGTAGAGGGCACCAGCAAGTGTCCAGTTGCCCGTGAAGCAGTCGCTTCCGTGTCCACTGTCCTCCAAGAGGAGTTTTTGGCTGAAAAAAGTCCTCCTGCACCCACAGCACTGTCTCTAAGGCTGCCCTGCACCCACAACATTGACCACAAACAGCCAGAGGAGACCATTGAGAACACCACAGAGTGCTCAGTTGACATAGAGGAAAGTGCAGTTGCATCCACTGTCAAGAGAGAGGAAATGATGGGTGATAAAAGCCCTGTCCATGCACTTCCTCCAAGCCTGGCATGCATCCATGACAAGGACCACAAGCAGCCAGATCAGAAAGGAAGGGGCACTACTGTGGAGGTGGATATCTGCCCTCACGCTCAACAGCTGGTCTCAGATGCTAACTTAACTCTGGCAACCCGCAATGATGAGCTGCCCAACCCTCTGATCTGCGTAGTCACTAAGATGCCTGTTAGAGTTGGAGCATCCATATGCAGGACAGAGGATGAGGAACCCAGGCCCTGGACCCTGGAAGAGGCAAAGGATCATTGGATAGGCATTGAAAttgagagtgaagagaggagcgTCACTAAGGAGGTGAGCCCGAGGGAGGGATTGAAGAGTGAGGCGGATTGTGCCCATTCCAAGTGCTCTATTGGGAAGGTTTCTACAGAGAGAGCAGAAACCATCCTGGGAAGAGTGGGCTTTCTGCTCATGAACCAAATGCAGAAAATCCCATTTTTGAAGATGGAGGAAAAAGAGAAAAATAAGAAACTGAATAAGAAGttgaaagataaagagagaaaggagattaAACACAAGGAGGAGGAgcaaaaaaagagggagaagaaagagatgaaggagagagagaaagagcagaagaaAGTCATGAAGGctgagaagaagagggagaagttagaacagaaaaagagagagaaggaaagaaaagagaaggaaaaggCAGAGAAAAAGAGGTTAGAGGGGCTGATGAAGATACATAATGACATGATGAAAGACAGAATTAAGAAAGAGAAGAAGTGTTCTGAGGagctgaaaaagagagagaaagctcaaGCTGCATtcttggagatggagagaaagattcaagaaaaggaggagaagaagagagaaaagatgaggagagaggagaggaagagactggaGGAGAAGAAAAAGAGGGAACCAGCTGGAGGTGGAACTGAGACGGTGATAGAAGAGCAGGGAAGGGATGAAAGCTTGAAGATGGATGAGTAGACTGGGTAAtagagagtagggagggagggatatggtATTTTTGCATGCAATGAAAGAACGaagcatttaaaaataaaataaaaaatgtttactcTGTTTGATTTTTGTTAAGGCATACTGTACAACACTGTATAAACACAAAATGTTGACTTTTCACACATCTGGGGAGTGTTTAATGATGAGGAGTTGAGGAAGAACAGGGGGGGAGTTGGAGGGTGGAGAGGAATATGATACAGAGGAATTTGATAGAAGGAAtatgatattttattttatttcactcggcatgtcagttcagaacaaattcttatttacaatgacggcctaccaaaaggcaaaaggcctc

Function

NR:

description
inner centromere protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952171.1 True 2163 mRNA 0.47 2 19007827 19010326

Neighbor

gene id symbol gene type direction distance location
LOC110513694 LOC106574589 coding upstream 8714 18992431 ~ 18999113 (+)
LOC110495744 LOC106575417 coding upstream 25313 18978802 ~ 18982514 (+)
LOC110495746 LOC106574508 coding upstream 29352 18959384 ~ 18978475 (+)
keap1a LOC106574506 coding upstream 61191 18925186 ~ 18946636 (+)
ebi3 ebi-3 coding upstream 102423 18903865 ~ 18905404 (+)
LOC118941111 NA coding downstream 19895 19030221 ~ 19033974 (+)
LOC110495747 LOC106574589 coding downstream 26214 19036540 ~ 19039332 (+)
LOC118941064 LOC106574589 coding downstream 34742 19045068 ~ 19050250 (+)
LOC118941112 LOC106574589 coding downstream 45323 19055649 ~ 19064884 (+)
LOC110496918 LOC106574589 coding downstream 66784 19077110 ~ 19079615 (+)
G1523498 NA non-coding upstream 16242 18991315 ~ 18991585 (+)
G1523488 NA non-coding upstream 50456 18957019 ~ 18957371 (+)
G1523487 NA non-coding upstream 51615 18955909 ~ 18956212 (+)
G1523449 NA non-coding upstream 125406 18882031 ~ 18882421 (+)
G1523446 NA non-coding upstream 128910 18878257 ~ 18878917 (+)
G1523517 NA non-coding downstream 41240 19051566 ~ 19052036 (+)
G1523525 NA non-coding downstream 90443 19100769 ~ 19141665 (+)
G1523526 LOC106574589 non-coding downstream 91430 19101756 ~ 19142175 (+)
G1523542 NA non-coding downstream 190776 19201027 ~ 19202188 (+)
G1523570 NA non-coding downstream 225360 19235686 ~ 19235905 (+)
LOC118936474 LOC106574488 other upstream 289182 18702289 ~ 18722091 (+)
LOC110495728 LOC106574584 other upstream 412227 18594324 ~ 18595682 (+)
G1522684 NA other upstream 627569 18379087 ~ 18380258 (+)
G1522438 NA other upstream 1147213 17856141 ~ 17860614 (+)
G1523506 NA other downstream 11679 19022005 ~ 19022395 (+)
LOC118941116 LOC106574589 other downstream 165537 19168683 ~ 19177819 (+)
otomp omp-1 other downstream 195906 19206164 ~ 19211574 (+)

Expression


Co-expression Network