LOC118941064 (LOC106574589)


Basic Information

Item Value
gene id LOC118941064
gene name LOC106574589
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19045068 ~ 19050250 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951417.1
ATGGAGGGTTCAACGCTGACACAGAGGAGGGCTGAGTGTCAGTTGAAGGATAGGGAGATCCAGACAGACTACATGATGGAGCTGGGAGCCAGGTTGGTTCTGGTGAGACAGatccagagggagcaggagaaggagatgaagaggaTTTGGTTTGAGACGAGGAAAATGCCAAGCCTGATTGAGGAGAATGTGAGAGATGTGACCAAACGTCCACTCACTGAGTTCATGGCTCCCTGTATTGACTCCCTCCCACCACTGGCTTTCACCAATCGGAGGCCAATACCAACCATGTTGCATCCCCCCTCTCCATTGGTCATACGCACTCAGGATGCACAGCGATTCATTGTATTTTCCTACTTTGTCCCTGCTGAGTGCCCAGTTTCCACAGAGGCCACAGCAGATGTATCTGCTGGTAGAAGAGAGGACTTGTCGACAGATACACATCTTTCCTCAATGCTGCATCGATACCTGCCACACTTCTTTAACAATGACTCCATTCCACCACAGCAGACAGTAGAGGGAACCACTGAGGACTCAGATTCTCCAGTGGCAATATCTAATATCAAGGAAGAGGACAGATTctatcctttctccctcccaccaCTGGCTCAGCGGTTCATTGGCAATTCATTCAAAGTCCCGGAAACCTCCCAGCCTGCTGTTTCAGCCACGGAGTGCCGAGTTGCCACAGTGGACACTGCAGATACAGCCACTGTCAAGAGAGAGAACCGATGGGCAGCTACAATTCTTCCTTCAGTGCTGCCTCCATGCCTGCCACCAGTCGTTGACGATGACTTAATGCCTCCAGAGCACACAGTAGAGGAATCCTATGTGGTCTCATTTGCTACAGAGGCCACTTCAGGCACAGCTACTGTTGATGGAATGGACAGATCAGCAGCTAAATGCCCTGTCCCAATGCTGCCTCCAAGTCTGCCACGTGTCTTTGACGACAAACTGCCAGGGGCGGCAGTAGAGGGAACCAACAAGTGTCCAGTTGCCAGTGAAACAACCAATGATGAGGAAAAAGAGGATGTACCCGAGTCCTCCCTTGCCACAGAGATCGCTGTAGGCACATCCATTGTCCAGGGAGAGGACCTGGATAAAAGCCCTGCTCCAAGGCTGCCTCCAAGCTTGTCACACGTTttggacaatgaccataagcagcCAGAGGAGACGATAGAGGAAGCCACTGAGTGCTCAGTCGCCGCAGAGGCATCAGTTGCTAATAGAGAGGATCCATCAGCAGCCACAGGTCTTCCCTTAGTGCTGCCTTCAAGCCTGCAACTTGTCTTTGACAATGACTACAAACTACCAGAGGAGGCAGTAGAGGGCACCAGCAAGTGTCCAGTTGCCCGTGAAGCAGTCGCTTCCGTGTCCACTGTCCTCCAAGAGGAGTTTTTGGCTGAAAAAAGTCCTCCTGCACCCACAGCACTGTCTCTAAGGCTGCCCTGCACCCACAACATTGACCACAAACAGCCAGAGGAGACCGTTGAGAACACCACAGAGTGCTCAGTTGACATAGAGGAAAGTGCAGTTGCATCCACTGTCAAGAGAGAGGAAATGATGGGTGATAAAAGCCCTGTCCATGCACTTCCTCCAAGCCTGGCATGCATCCATGACAAGGACCACAAGCAGCCAGATCAGAAAGGAAGGGGCACTACTGTGGAGGTGGATATCTGCCCTCACGCTCAACAGCTGGTCTCAGATGCTAACTTAACTCTGGCAACCCGCAATGATGAGCTGCCCAACCCTCTGATCTGCGTAGTCACTAAGATGCCTGTTAGAGTTGGAGCATCCATATGCAGGTCAGAGGATGAGGAACCCAGGCCCTGGACCCTGGAAGAGGCAAAGGATCATTGGATAGGCATTGAAAttgagagtgaagagaggagcgTCACTGAGGAGGTGAGCCCGAGGGAGGGATTGAAGAGTGAGGCGGATTGTGCCCATTCCAAGTGCTCTATTGGGAAGGTTTCAACAGAGAGAGCAGAAACCATCCTGGGAAGAGTGGGCTTTCTGCTCATGAACCAAATGCAGAAAATCCCATTTTTGAAGATGGAGGAAAAAGAGAAAAATAAGAAACTGAATAAGAAGTTGaaagatgaagagaaagagagaaaggagataaaACACAAGGAGGAGGAgcaaaaaaagagggagaagaaagagatgaaggagagagagaaagagcagaagaaAGTCATGAAGGctgagaagaagagggagaagttagaacagaaaaagagagagaaggaaagaaaagagaaggaaaaggCAGAGAAAAAGAGGTTAGAGGGGCTGATGAAGATACATAATGACATGATGAAAGACAGAATTAAGAAAGAGAAGAAGTGTTCTGAGGagctgaaaaagagagagaaagctcaaGCTGCATtcttggagatggagagaaagattcaagaaaaggaggagaagaagagagaaaagatgaggagagaggagaggaagagactggaGGAGAAGAAAAAGAGGGAACCAGCTGGAGGTGGAACTGAGACGGTGATAGAAGAGCAGGGAAGGGATGAAAGCTTGAAGATGGATGAGTAGACTGGGTAAtagagagtagggagggagggatatggtATTTTTGCATGCAATG

Function

NR:

description
inner centromere protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951417.1 True 2620 mRNA 0.49 4 19045068 19050250

Neighbor

gene id symbol gene type direction distance location
LOC110495747 LOC106574589 coding upstream 5736 19036540 ~ 19039332 (+)
LOC118941111 NA coding upstream 11094 19030221 ~ 19033974 (+)
LOC118941110 LOC106574589 coding upstream 34742 19007827 ~ 19010326 (+)
LOC110513694 LOC106574589 coding upstream 45955 18992431 ~ 18999113 (+)
LOC110495744 LOC106575417 coding upstream 62554 18978802 ~ 18982514 (+)
LOC118941112 LOC106574589 coding downstream 5399 19055649 ~ 19064884 (+)
LOC110496918 LOC106574589 coding downstream 26860 19077110 ~ 19079615 (+)
LOC118941113 NA coding downstream 51604 19101854 ~ 19105354 (+)
LOC118941065 LOC106574589 coding downstream 62769 19113019 ~ 19118762 (+)
LOC118941066 LOC106574589 coding downstream 77759 19128009 ~ 19133673 (+)
G1523498 NA non-coding upstream 53483 18991315 ~ 18991585 (+)
G1523488 NA non-coding upstream 87697 18957019 ~ 18957371 (+)
G1523487 NA non-coding upstream 88856 18955909 ~ 18956212 (+)
G1523449 NA non-coding upstream 162647 18882031 ~ 18882421 (+)
G1523446 NA non-coding upstream 166151 18878257 ~ 18878917 (+)
G1523517 NA non-coding downstream 1316 19051566 ~ 19052036 (+)
G1523525 NA non-coding downstream 50519 19100769 ~ 19141665 (+)
G1523526 LOC106574589 non-coding downstream 51506 19101756 ~ 19142175 (+)
G1523542 NA non-coding downstream 150852 19201027 ~ 19202188 (+)
G1523570 NA non-coding downstream 185436 19235686 ~ 19235905 (+)
G1523506 NA other upstream 22673 19022005 ~ 19022395 (+)
LOC110495746 LOC106574508 other upstream 71064 18959384 ~ 18978475 (+)
LOC118936474 LOC106574488 other upstream 326423 18702289 ~ 18722091 (+)
LOC110495728 LOC106574584 other upstream 449468 18594324 ~ 18595682 (+)
G1522684 NA other upstream 664810 18379087 ~ 18380258 (+)
LOC118941116 LOC106574589 other downstream 125613 19168683 ~ 19177819 (+)
otomp omp-1 other downstream 155982 19206164 ~ 19211574 (+)
G1523614 NA other downstream 326817 19377067 ~ 19378472 (+)

Expression


Co-expression Network