LOC118941112 (LOC106574589)


Basic Information

Item Value
gene id LOC118941112
gene name LOC106574589
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19055649 ~ 19064884 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952173.1
catgtgttatttcatagtgttgatgtcttccctattctGCCctcccaagcaaaaaggcagtaactgctcatttggtcaAAAATTAGTTCATGTCATTTTTGTTAGATTAAATgcatgcttaatcatgtggacaagtatcctgcctctattgtattgtgttttggagaaaatggggtTTACCTTTGTATCATATCATTTTATTCTGTGATGCAATCGAACCTGTAtgacactgacctacacacacataccttgCTAATCTAGGGATACAACTCCATGGAACAGCATTCCCGGGGGTTAAATGATGGTTGAACTTGCTCTGAAACGCCGACATCCAGACAGACACTGttgagtttgagggccacATTCCAACAAAGATTCCTGATCTACCCCCTTTAACTGAAGTCACAGTGTCAACACTACTTGAAGAAATAGAGAACCAGTGGGTGGTCTCTGACAGACTTATTGTTAGCTAGGAGGAAGACATGGAGGGTTCAACGCTGACACAGAGGAGGGCTGAGTGTCAGTTGAAGGATAGGGAGATCCAGACAGACTACATGATGGAGCTGGGAGCCAGGTTGGTTCTGGTGAGACAGatccagagggagcaggagaaggagatgaagaggaTTTGGTTTGAGACGAGGAAAATGCCAAGCCTGATTGAGGAGAATGTGAGAGATGTGACCAAACGTCCACTCACTGAGTTCATGGCTCCCTGTATTGACTCCCTCCCACCACTGGCTTTCACCAATCGGAGGCCAATACCAACCATGTTGCATCCCCCCTCTCCATTGGTCATACGCACTCAGGATGCACAGCGATTCATTGTATTTTCCTACTTTGTCCCTGCTGAGTGCCCAGTTTCCACAGAGGCCACAGCAGATGTATCTGCTGGTAGAAGAGAGGACTTGTCGACAGATACACATCTTTCCTCAATGCTGCATCGATACCTGCCACACTTCTTTAACGATGACTCCATTCCACCACAGCAGACAGTAGAGGGAACCACTGATTCTCCAGTGGCAATATCTAATATCAAGGAAGAGGACAGATTctatcctttctccctcccaccaCTGGCTCAGCGGTTCATTGGCAATTCATTCAAAGTCCCGGAAACCTCCCAGCCTGCTGTTTCAGCCACGGAGTGCCGAGTTGCCACAGTGGACACTGCAGATACAGCCACTGTCAAGAGAGAGAACCGATGGGCAGCTACAATTCTTCCTTCAGTGCTGCCTCCATGCCTGCCACCAGTCGTTGACGATGACTTCATGCCTCCAGAGCACACAGTAGAGGAATCCTATGTGGTCTCATTTGCTACAGAGGCCACTTCAGGCACAGCTACTGTTGATGGAATGGACAGATCAGCAGCTAAATGCCCTGTCCCAATGCTGCCTCCAAGTCTGCCACGTGTCTTTGACGACAAACTGCCAGGGGCGGCAGTAGAGGGAACCAACAAGTGTCCAGTTGCCAGTGAAACAACCAATGATGTGTCCACTCACCTCAAAGAGAACATGGGAGCTGATCAAAGCCCTCCTGACCCTGCAGCACTGCCTCCAAGCTCGCCATGTATCTGTGACTCTGACCACAAACTGACCAAGGAGGAAAAAGAGGATGTACCCGAGTCCTCCCTTGCCACAGAGATCGCTGTAGGCACATCCATTGTCCAGGGAGAGGACCTGGATAAAAGCCCTGCTCCAAGGCTGCCTCCAAGCTTGTCACACGTTttggacaatgaccataagcagcCAGAGGAGACGATAGAGGAAGCCACTCAGTGCTCAGTCGCCGCAGAGGCATCAGTTGCTAATAGAGAGGATCCATCAGCAGCCACAGGTCTTCCCTTAGTGCTGCCTTCAAGCCTGCAACTTGTCTTTGACAATGACTACAAACTACCAGAGGAGGCAGTAGAGGGCACCAGCAAGTGTCCAGTTGCCCGTGAAGCAGTCGCTTCCGTGTCCACTGTCCTCCAAGAGGAGTTTTTGGCTGAAAAAAGTCCTCCTGCACCCACAGCACTGTCTCTAAGGCTGCCCTGCACCCACAACATTGACCACAAACAGCCAGAGGAGACCGTTGAGAACACCACAGAGTGCTCAGTTGACATAGAGGAAAGTGCAGTTGCATCCACTGTCAAGAGAGAGGAAATGATGGGTGATAAAAGCCCTGTCCATGCACTTCCTCCAAGCCTGGCATGCATCCATGACAAGGACCCCAAGCAGCCAGATCAGAAAGGAAGGGGCACTACTGTGGAGGTGGATATCTGCCCTCACGTTCAACAGCTGGTCTCAGATGCTAACTTAACTCTGGCAACCCGCAATGATGAGCTGCCCAACCCTCTGATCTGCGTAGTCACTAAGATGCCTGTTAGAGTTGGAGCATCCATATGCAGGTCAGAGGATGAGGAACCCAGGCCCTGGACCCTGGAAGAGGTAAAGGATCATTGGATAGGCATTGAAAttgagagtgaagagaggagcgTCACTAAGGAGGTGAGCCCGAGGGAGGGATTGAAGAGTGAGGCGGATTGTGCCCATTCCAAGTGCTCTATTGGGAAGGTTTCTACAGAGAGAGCAGAAACCATCCTGGGAAGAGTGGGCTTTCTGCTCATGAACCAAATGCAGAAAATCCCATTTTTGAAGATGGAGGAAAAAGAGAAAAATAAGAAACTGAATAAGAAGttgaaagataaagagagaaaggagattaAACACAAGGAGGAGGAgcaaaaaaagagggagaagaaagagatgaaggagagagagaaagagcagaagaaAGTCATGAAGGctgagaagaagagggagaagttagaacagaaaaagagagagaaggaaagaaaagagaaggaaaaggCAGAGAAAAAGAGGTTAGAGGGGCTGATGAAGATACATAATGACATGATGAAAGACAGAATTAAGAAAGAGAAGAAGTGTTCTGAGGagctgaaaaagagagagaaagctcaaGCTGCATtcttggagatggagagaaagattcaagaaaaggaggagaagaagagagaaaagatgaggagagaggagaggaagagactggaGGAGAAGAAAAAGAGGGAACCAGCTGGAGGTGGAACTGAGACGGTGATAGAAGAGCAGGGAAGGGATGAAAGCTTGAAGATGGATGAGTAGACTGGGTAAtagagagtagggagggagggatatggtATTTTTGCATGCAATGAAAGAACGaagcatttaaaaataaaataaaaaatgtttactcTGTTTGATTTTTGTTAAGGCATACTGTACAACACTGTATAAACACAAAATGTTGACTTTTCACACATCTGGGGAGTGTTTAATGATGAGGAGTTGAGGAAGAACAGGGGGGGAGTTGGAGGGTGGAGAGGAATATGATACAGAGGAATTTGATAGAAGGAAtatgatattttattttatttcactcggcatgtcagttcagaacaaattcttatttacaatgacggcctaccaaaaggcaaaaggcctc
>XM_036952172.1
ACACCTGTACTATGAATGGTCAACAATTTAATAAGAGGTAGAgcattttattttaataaaacatttggtTACATGGATTCAATGTAAATATTACATATGACTGTGCTCAACAGGTTAAAAAAAAGGGAATTGTTCTAGCATTTGATTACACATGAGAGCTTCTGTGGGTAGTCATAGCAATGGGGCCTTCATTGTGACATCACAAGATTCTGATTCTGGGAGGTTAGCTgttgcacagacaaacagaacagtGCAAAGAGACTGATTCAACTAACCACTGACAGATTATTCATGTCCTATTTCATTAGCAAGAGAACACGCTGCTTACTTGAGAGACTTATTGTTAGCTAGGAGGAAGACATGGAGGGTTCAACGCTGACACAGAGGAGGGCTGAGTGTCAGTTGAAGGATAGGGAGATCCAGACAGACTACATGATGGAGCTGGGAGCCAGGTTGGTTCTGGTGAGACAGatccagagggagcaggagaaggagatgaagaggaTTTGGTTTGAGACGAGGAAAATGCCAAGCCTGATTGAGGAGAATGTGAGAGATGTGACCAAACGTCCACTCACTGAGTTCATGGCTCCCTGTATTGACTCCCTCCCACCACTGGCTTTCACCAATCGGAGGCCAATACCAACCATGTTGCATCCCCCCTCTCCATTGGTCATACGCACTCAGGATGCACAGCGATTCATTGTATTTTCCTACTTTGTCCCTGCTGAGTGCCCAGTTTCCACAGAGGCCACAGCAGATGTATCTGCTGGTAGAAGAGAGGACTTGTCGACAGATACACATCTTTCCTCAATGCTGCATCGATACCTGCCACACTTCTTTAACGATGACTCCATTCCACCACAGCAGACAGTAGAGGGAACCACTGATTCTCCAGTGGCAATATCTAATATCAAGGAAGAGGACAGATTctatcctttctccctcccaccaCTGGCTCAGCGGTTCATTGGCAATTCATTCAAAGTCCCGGAAACCTCCCAGCCTGCTGTTTCAGCCACGGAGTGCCGAGTTGCCACAGTGGACACTGCAGATACAGCCACTGTCAAGAGAGAGAACCGATGGGCAGCTACAATTCTTCCTTCAGTGCTGCCTCCATGCCTGCCACCAGTCGTTGACGATGACTTCATGCCTCCAGAGCACACAGTAGAGGAATCCTATGTGGTCTCATTTGCTACAGAGGCCACTTCAGGCACAGCTACTGTTGATGGAATGGACAGATCAGCAGCTAAATGCCCTGTCCCAATGCTGCCTCCAAGTCTGCCACGTGTCTTTGACGACAAACTGCCAGGGGCGGCAGTAGAGGGAACCAACAAGTGTCCAGTTGCCAGTGAAACAACCAATGATGTGTCCACTCACCTCAAAGAGAACATGGGAGCTGATCAAAGCCCTCCTGACCCTGCAGCACTGCCTCCAAGCTCGCCATGTATCTGTGACTCTGACCACAAACTGACCAAGGAGGAAAAAGAGGATGTACCCGAGTCCTCCCTTGCCACAGAGATCGCTGTAGGCACATCCATTGTCCAGGGAGAGGACCTGGATAAAAGCCCTGCTCCAAGGCTGCCTCCAAGCTTGTCACACGTTttggacaatgaccataagcagcCAGAGGAGACGATAGAGGAAGCCACTCAGTGCTCAGTCGCCGCAGAGGCATCAGTTGCTAATAGAGAGGATCCATCAGCAGCCACAGGTCTTCCCTTAGTGCTGCCTTCAAGCCTGCAACTTGTCTTTGACAATGACTACAAACTACCAGAGGAGGCAGTAGAGGGCACCAGCAAGTGTCCAGTTGCCCGTGAAGCAGTCGCTTCCGTGTCCACTGTCCTCCAAGAGGAGTTTTTGGCTGAAAAAAGTCCTCCTGCACCCACAGCACTGTCTCTAAGGCTGCCCTGCACCCACAACATTGACCACAAACAGCCAGAGGAGACCGTTGAGAACACCACAGAGTGCTCAGTTGACATAGAGGAAAGTGCAGTTGCATCCACTGTCAAGAGAGAGGAAATGATGGGTGATAAAAGCCCTGTCCATGCACTTCCTCCAAGCCTGGCATGCATCCATGACAAGGACCCCAAGCAGCCAGATCAGAAAGGAAGGGGCACTACTGTGGAGGTGGATATCTGCCCTCACGTTCAACAGCTGGTCTCAGATGCTAACTTAACTCTGGCAACCCGCAATGATGAGCTGCCCAACCCTCTGATCTGCGTAGTCACTAAGATGCCTGTTAGAGTTGGAGCATCCATATGCAGGTCAGAGGATGAGGAACCCAGGCCCTGGACCCTGGAAGAGGTAAAGGATCATTGGATAGGCATTGAAAttgagagtgaagagaggagcgTCACTAAGGAGGTGAGCCCGAGGGAGGGATTGAAGAGTGAGGCGGATTGTGCCCATTCCAAGTGCTCTATTGGGAAGGTTTCTACAGAGAGAGCAGAAACCATCCTGGGAAGAGTGGGCTTTCTGCTCATGAACCAAATGCAGAAAATCCCATTTTTGAAGATGGAGGAAAAAGAGAAAAATAAGAAACTGAATAAGAAGttgaaagataaagagagaaaggagattaAACACAAGGAGGAGGAgcaaaaaaagagggagaagaaagagatgaaggagagagagaaagagcagaagaaAGTCATGAAGGctgagaagaagagggagaagttagaacagaaaaagagagagaaggaaagaaaagagaaggaaaaggCAGAGAAAAAGAGGTTAGAGGGGCTGATGAAGATACATAATGACATGATGAAAGACAGAATTAAGAAAGAGAAGAAGTGTTCTGAGGagctgaaaaagagagagaaagctcaaGCTGCATtcttggagatggagagaaagattcaagaaaaggaggagaagaagagagaaaagatgaggagagaggagaggaagagactggaGGAGAAGAAAAAGAGGGAACCAGCTGGAGGTGGAACTGAGACGGTGATAGAAGAGCAGGGAAGGGATGAAAGCTTGAAGATGGATGAGTAGACTGGGTAAtagagagtagggagggagggatatggtATTTTTGCATGCAATGAAAGAACGaagcatttaaaaataaaataaaaaatgtttactcTGTTTGATTTTTGTTAAGGCATACTGTACAACACTGTATAAACACAAAATGTTGACTTTTCACACATCTGGGGAGTGTTTAATGATGAGGAGTTGAGGAAGAACAGGGGGGGAGTTGGAGGGTGGAGAGGAATATGATACAGAGGAATTTGATAGAAGGAAtatgatattttattttatttcactcggcatgtcagttcagaacaaattcttatttacaatgacggcctaccaaaaggcaaaaggcctc

Function

NR:

description
inner centromere protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952173.1 False 3489 mRNA 0.47 5 19055649 19064884
XM_036952172.1 True 3367 mRNA 0.47 4 19058061 19064884

Neighbor

gene id symbol gene type direction distance location
LOC118941064 LOC106574589 coding upstream 5399 19045068 ~ 19050250 (+)
LOC110495747 LOC106574589 coding upstream 16317 19036540 ~ 19039332 (+)
LOC118941111 NA coding upstream 21675 19030221 ~ 19033974 (+)
LOC118941110 LOC106574589 coding upstream 45323 19007827 ~ 19010326 (+)
LOC110513694 LOC106574589 coding upstream 56536 18992431 ~ 18999113 (+)
LOC110496918 LOC106574589 coding downstream 12226 19077110 ~ 19079615 (+)
LOC118941113 NA coding downstream 36970 19101854 ~ 19105354 (+)
LOC118941065 LOC106574589 coding downstream 48135 19113019 ~ 19118762 (+)
LOC118941066 LOC106574589 coding downstream 63125 19128009 ~ 19133673 (+)
LOC118941114 LOC106574589 coding downstream 74515 19139399 ~ 19148567 (+)
G1523517 NA non-coding upstream 3613 19051566 ~ 19052036 (+)
G1523498 NA non-coding upstream 64064 18991315 ~ 18991585 (+)
G1523488 NA non-coding upstream 98278 18957019 ~ 18957371 (+)
G1523487 NA non-coding upstream 99437 18955909 ~ 18956212 (+)
G1523449 NA non-coding upstream 173228 18882031 ~ 18882421 (+)
G1523525 NA non-coding downstream 35885 19100769 ~ 19141665 (+)
G1523526 LOC106574589 non-coding downstream 36872 19101756 ~ 19142175 (+)
G1523542 NA non-coding downstream 136218 19201027 ~ 19202188 (+)
G1523570 NA non-coding downstream 170802 19235686 ~ 19235905 (+)
G1523571 NA non-coding downstream 172170 19237054 ~ 19265291 (+)
G1523506 NA other upstream 33254 19022005 ~ 19022395 (+)
LOC110495746 LOC106574508 other upstream 81645 18959384 ~ 18978475 (+)
LOC118936474 LOC106574488 other upstream 337004 18702289 ~ 18722091 (+)
LOC110495728 LOC106574584 other upstream 460049 18594324 ~ 18595682 (+)
G1522684 NA other upstream 675391 18379087 ~ 18380258 (+)
LOC118941116 LOC106574589 other downstream 110979 19168683 ~ 19177819 (+)
otomp omp-1 other downstream 141348 19206164 ~ 19211574 (+)
G1523614 NA other downstream 312183 19377067 ~ 19378472 (+)

Expression


Co-expression Network