otomp (omp-1)


Basic Information

Item Value
gene id otomp
gene name omp-1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19206164 ~ 19211574 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021570527.2
TGAGGGTTCCTCAGGACAAGGGTATAAGAGGGGGTCGATGTGAAAGCATTTTTTTCCCATAAAACCTCAGGTTACTGGTTTCTCCACTGTAGCATTCAGTTGGAGTGTGTCTCGTGTGAGAGGGGAGATTTTGTCTTcacagtgtgtgtttgagagagaggagatttCGTCTTcacagtgtgtgtttgagaggaGATTTCGTCTTCACAGTGTGCgtttgagagagaggagatttCGTCTTcacagtgtgtgtttgagagagaggagatttCGTCTTcacagtgtgtgtttgagaggaGATTTCGTCTTcacagtgtgtgtttgagagagagaagatTTCTCCGATTTTGTCAGTCAACATGGATCGTCTGGATAGAAGGCTGGCCAtgactcttctcctcttctcattcATCTCGTTCTCCACTCAGAAAACCTCAATCTCCTGGTGTGTAGTGTCGGAGGCAGAGGAGCAGAAGTGTCTGGATCTGGCTGGGAGTGCTACAGCCCGGAATATCAGAGGAACGCTGCTGTGCGTCCGTGGCCAGAGTCCCACAGACTGCATGGAGAAGATCAAGAATGGTACAGCGGATGCAGCAGCCATGTTTGCTGATGATATCTACACAGCTGGCTGGTGCTTTGGACTAGAACTGGCTGCTGGAGAGTCTTACAATGGAGTGGATGGTATCAGCTACTATGTTGTAGCTCTGGCTCGTCGCTCCTCCAGTGACCTGTCCCTGTTGGAGATGCATGAACGCAGCTCCTGTCACCCAGGGATCCGTACCACGGTGGGCTGGACTGTTCCTATTGGCTTCCTGGTCAACACCTCACAGATCAGTGTCGATGAACAATGCAACTTTCCTAAAGCGGTGGGGGACTTCTTTGGCTACAGCTGTGTACCAGGAGTAAAGGACAGAGAACACGACCCCAGAGGAAGCAACCCTAAGAACCTGTGTGAAGCCTGCATAGGAGACGACAACGAGAGACATATATGTGTTAACAATCACCGAGAGAGACACTATGGAGAGGCTGGGGCActgagGTGTGTGGCTGAGAATTTGGGCGATGTGGCATTTGTCAAACACACCACCATTTTTGACAACATGGATGGCAACAATATGGAATCATGGGCCATGGACCTGGAACTGGAGGACCTGAAGCTGCTGTGCCCGGATGGCAGCGAGGCCGGGCCGTTTGACCATGAGACGTGTCACCTGGCTGTGGTACCAGCTAACGCTGTGGTGGTACGCCCAGAGGACAAGTGTAGAGTCTGGAAATACCTGGAACGCTTAcagaATGCGTTTGGGAACACCACCATGTTCAGCTCAGTGGGCTACACCCAATCAGATCTCCTGTTTTCTGACTCCACCCACCACCTGCTCAGGGTTGTGGGTAGTTACACTTCCTGGTTGGGTCCCTCATACACCACGGTCCTGCAGGCCTTCGAGTGTGAAAGTTTGTGCTGATCCTTCTAGAAAGAAATCAACCAgcatcctctccatctctaccctcactatctctccacctctttctttcCCTACCTCCATATCGTATCCTCCCTCCCGCCATACCcacctcccttccttcctccatcctcccctccctccctatatcctccctccctccctccctccctccctccctccctccctccctccctccctccctccctcccgtgtGATGATATGGTAGATATTCAGAGTGTTTCTTTGCTCCCACACAGTTCCAGTAGTCCCTTATCCTCCTATAAAAAATATCAATGTCATTAACTCACTGAATCacaatctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcacccatgGTTCACTGCGTTCCCACGGTTGGTATAGCAGACCACCATGCTAGTCACTCTACACCTGACAGAGAGGGGATTACAGCTATAAATCGCCAccagacactgatctaaggtcaggtTAATGTTTTGGTGGTTAATGTTCCATTTTGGgaaggtaagctgatcctagatctgtgctaaAATAGGAACTTCTACCCAGAGCAGTAATCCATGACACTCTATACACAGCAATTCAAAACAAATGCCGACTCACACTGCATTAAACCATGTATTCAGAGCGTTTTGATTGACCTTGAAGGTGCTGAAATATTGGTGATAATACGTGTGATAAGATGTTTGAAGCCACTGAAATTATGTTTGTACTGTAAATCACTGCCACCATTGAATGAACAGGAATCACCATTTTTTTCTATCATTTCTTCTGGAGAATGTTCTCTCTATCAAAACAATTCCTTATGACCTCTATATTTTGTTAATGTTGTACCTGTAGAGTAACTCACTCTACGGAGGTATATTGGTGCTGTGACACTACAGTATTTTCTGTCTGTCTTCAGGATTTAAATTGTTCTAAAGAGACCTGTGTGTAAATACTCTTCACCTGCTGGTATTTGTAGTTCTGCAACCTCTTTAAATATATTAAAGAAATGAT
>NM_001124192.1
TTTCTCCACTGTAGCATTCAGTTGGAGTGTGTCTCGTGTGAGAGGGGAGATTTTGTCTTcacagtgtgtgtttgagagagaggagatttCGTCTTcacagtgtgtgtttgagaggaGATTTCGTCTTCACAGTGTGCgtttgagagagaggagATTTCGTCTTcacagtgtgtgtttgagagagagaagatTTCTCCGATTTTGTCAGTCAACATGGATCGTCTGGATAGAAGGCTGGCCAtgactcttctcctcttctcattcATCTCGTTCTCCACTCAGAAAACCTCAATCTCCTGGTGTGTAGTGTCGGAGGCAGAGGAGCAGAAGTGTCTGGATCTGGCTGGGAGTGCTACAGCCCGGAATATCAGAGGAACGCTGCTGTGCGTCCGTGGCCAGAGTCCCACAGACTGCATGGAGAAGATCAAGAATGGTACAGCGGATGCAGCAGCCATGTTTGCTGATGATATCTACACAGCTGGCTGGTGCTTTGGACTAGAACTGGCTGCTGGAGAGTCTTACAATGGAGTGGATGGTATCAGCTACTATGTTGTAGCTCTGGCTCGTCGCTCCTCCAGTGACCTGTCCCTGTTGGAGATGCATGAACGCAGCTCCTGTCACCCAGGGATCCGTACCACGGTGGGCTGGACTGTTCCTATTGGCTTCCTGGTCAACACCTCACAGATCAGTGTCGATGAACAATGCAACTTTCCTAAAGCGGTGGGGGACTTCTTTGGCTACAGCTGTGTACCAGGAGTAAAGGACAGAGAACACGACCCCAGAGGAAGCAACCCTAAGAACCTGTGTGAAGCCTGCATAGGAGACGACAACGAGAGACATATATGTGTTAACAATCACCGAGAGAGACACTATGGAGAGGCTGGGGCActgagGTGTGTGGCTGAGAATTTGGGCGATGTGGCATTTGTCAAACACACCACCATTTTTGACAACATGGATGGCAACAATATGGAATCATGGGCCATGGACCTGGAACTGGAGGACCTGAAGCTGCTGTGCCCGGATGGCAGCGAGGCCGGGCCGTTTGACCATGAGACGTGTCACCTGGCTGTGGTACCAGCTAACGCTGTGGTGGTACGCCCAGAGGACAAGTGTAGAGTCTGGAAATACCTGGAACGCTTAcagaATGCGTTTGGGAACACCACCATGTTCAGCTCAGTGGGCTACACCCAATCAGATCTCCTGTTTTCTGACTCCACCCACCACCTGCTCAGGGTTGTGGGTAGTTACACTTCCTGGTTGGGTCCCTCATACACCACGGTCCTGCAGGCCTTCGAGTGTGAAAGTTTGTGCTGATCCTTCTAGAAAGAAATCAACCAgcatcctctccatctctaccctcactatctctccacctctttctttcCCTACCTCCATATCGTATCCTCCCTCCCGCCATACCcacctcccttccttcctccatcctcccctccctccct
>TU1744498
AGGTTACTGGTTTCTCCACTGTAGCATTCAGTTGGAGTGTGTCTCGTGTGAGAGGGGAGATTTTGTCTTcacagtgtgtgtttgagagagaggagatttCGTCTTcacagtgtgtgtttgagaggaGATTTCGTCTTCACAGTGTGCgtttgagagagaggagatttCGTCTTcacagtgtgtgtttgagagagaggagatttCGTCTTcacagtgtgtgtttgagaggaGATTTCGTCTTcacagtgtgtgtttgagagagagaagatTTCTCCGATTTTGTCAGTCAACATGGATCGTCTGGATAGAAGGCTGGCCAtgactcttctcctcttctcattcATCTCGTTCTCCACTCAGAAAACCTCAATCTCCTGGTGTGTAGTGTCGGAGGCAGAGGAGCAGAAGTGTCTGGATCTGGCTGGGAGTGCTACAGCCCGGAATATCAGAGGAACGCTGCTGTGCGTCCGTGGCCAGAGTCCCACAGACTGCATGGAGAAGATCAAGAATGGTACAGCGGATGCAGCAGCCATGTTTGCTGATGATATCTACACAGCTGGCTGGTGCTTTGGACTAGAACTGGCTGCTGG
>TU1744499
AGGTTACTGGTTTCTCCACTGTAGCATTCAGTTGGAGTGTGTCTCGTGTGAGAGGGGAGATTTTGTCTTcacagtgtgtgtttgagagagaggagatttCGTCTTcacagtgtgtgtttgagaggaGATTTCGTCTTCACAGTGTGCgtttgagagagaggaGATTTCGTCTTcacagtgtgtgtttgagagagagaagatTTCTCCGATTTTGTCAGTCAACATGGATCGTCTGGATAGAAGGCTGGCCAtgactcttctcctcttctcattcATCTCGTTCTCCACTCAGAAAACCTCAATCTCCTGGTGTGTAGTGTCGGAGGCAGAGGAGCAGAAGTGTCTGGATCTGGCTGGGAGTGCTACAGCCCGGAATATCAGAGGAACGCTGCTGTGCGTCCGTGGCCAGAGTCCCACAGACTGCATGGAGAAGATCAAGAATGGTACAGCGGATGCAGCAGCCATGTTTGCTGATGATATCTACACAGCTGGCTGGTGCTTTGGACTAGAACTGGCTGCTGG

Function

NR:

description
otolith matrix protein 1 isoform X1

GO:

id name namespace
GO:0006879 cellular iron ion homeostasis biological_process
GO:0048840 otolith development biological_process
GO:0006826 iron ion transport biological_process
GO:0005576 extracellular region cellular_component
GO:0008199 ferric iron binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021570527.2 False 2512 mRNA 0.48 10 19206164 19211574
NM_001124192.1 False 1460 mRNA 0.52 11 19206242 19210668
TU1744498 False 590 TUCP 0.49 3 19206232 19207234
TU1744499 True 522 TUCP 0.50 4 19206232 19207234

Neighbor

gene id symbol gene type direction distance location
LOC118941045 NA coding upstream 969 19203536 ~ 19205195 (+)
LOC110497082 LOC106575380 coding upstream 19970 19184295 ~ 19186194 (+)
LOC118936408 LOC106575380 coding upstream 21908 19182418 ~ 19184256 (+)
LOC118941116 LOC106574589 coding upstream 28345 19168683 ~ 19177819 (+)
LOC118941115 LOC106574589 coding upstream 43093 19153954 ~ 19163071 (+)
LOC110495749 LOC106575379 coding downstream 51592 19263166 ~ 19286263 (+)
LOC110495750 LOC106574515 coding downstream 83945 19295519 ~ 19321171 (+)
LOC110495753 LOC106574519 coding downstream 196070 19407644 ~ 19414042 (+)
LOC110495754 ola1 coding downstream 212675 19424249 ~ 19434856 (+)
LOC110495755 LOC106574522 coding downstream 225125 19436699 ~ 19444433 (+)
G1523542 NA non-coding upstream 3976 19201027 ~ 19202188 (+)
G1523526 LOC106574589 non-coding upstream 63989 19101756 ~ 19142175 (+)
G1523525 NA non-coding upstream 64499 19100769 ~ 19141665 (+)
G1523517 NA non-coding upstream 154128 19051566 ~ 19052036 (+)
G1523498 NA non-coding upstream 214579 18991315 ~ 18991585 (+)
G1523570 NA non-coding downstream 24112 19235686 ~ 19235905 (+)
G1523571 NA non-coding downstream 25480 19237054 ~ 19265291 (+)
G1523575 NA non-coding downstream 39361 19250935 ~ 19255872 (+)
G1523590 NA non-coding downstream 75823 19287397 ~ 19287613 (+)
G1523591 NA non-coding downstream 76906 19288480 ~ 19288702 (+)
G1523506 NA other upstream 183769 19022005 ~ 19022395 (+)
LOC110495746 LOC106574508 other upstream 232160 18959384 ~ 18978475 (+)
G1523614 NA other downstream 165493 19377067 ~ 19378472 (+)
G1523703 LOC106575364 other downstream 294818 19506392 ~ 19507256 (+)
LOC110495769 LOC106575326 other downstream 539158 19748427 ~ 19761242 (+)
G1523847 NA other downstream 563518 19775092 ~ 19827966 (+)

Expression


Co-expression Network