LOC110495763 (LOC106574527)


Basic Information

Item Value
gene id LOC110495763
gene name LOC106574527
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19546585 ~ 19561223 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952205.1
CCACAATCCCCCACTTTACCCTTTGGTTTTAGGACATTATGGCTGCGCACTGTTCATCAATGGTGTTTATAGTTACGTTTTTTCGTTTTTTCTCTTATTTAAAACAGAGGAATGTAGACAGACTTTGGCTTCGATTATAACTTTACAAAAAAAGCATTAGGAGATTTCTGGAGTTAAAGCTCTATTTGCGTCAGGAACGCTGAAACACGTTTTGCTTGATAGCTAAGGAGTCAGATAGCCAGGTAGGATAGTTGTCTGTCACCGGTCCGAATTTAGCTGTTGTAAACTCAGTTCACACAAAATTAACTCGTATTGTAAAGGCAATGATTGTATAGCTTGTTAGTTAACCGCTACAATAATTGCTATAACTCGATCACTATACGGGAACACACTAGTTATCTATTCATAGCTATGTTTACCCCTGTAAAGTCGTCTTATTTCAGAGTCAGTCCCACTACTATCAACAGAGAGCTAGGCAAGACCAAGATGAGATAGCAAGAGGAGTTATTGGTTAGCTAGCTACGCGATAGTGAACACAATTAGACATTAAATTAAGTCCCCCGAAGGTGCGTTTcacaggaaagagagaaacagacgcAAGCCCAGCCATGTTTGGGAGTCTTTTCGAGGAAGAGGAGGGATTTTCTCTGGTTCCCTCAGGAGGTAGAGTTGTTAAgagggaaggggagccacctccACCCCGGGGAAGAGTTAATCTCAGCGGGATTAAAAACCAGGGAGGGACGTGCTACCTCAACTCCCTGCTCCAGACCCTGCTCTTCACCCCGGAgttcagagaggagCTGTTCAGTCTGGGTCCAAAGGAATTGGGCTGCCTGGAGGACAAAGACAAACCAGAGGCCAAGGTCAGGGTTATTCCATTGGAGCTCCAGAGGCTGTTTGCTCGTCTACTCTTGGTGGACCAACAGAGTGCCTCTACTGGTGATCTCACTGACAGCTTCGGATGGAACAACAGCGAGGAGAGCAGGCAACATGATGTGCAGGAGTTGAACAGGATTCTGTTCAGTGCCCTAGAGCACTCCCTGGTGGACACCAGCGGTAGTGCGTTCATCCAGCGCCTCTACCATGGCACCACTGTCAACAGCATCCTGTGCAAAGAGTGTGGCAACATCAGCCAGAGacagGAGGACTTCCTGGACCTGACCGTGTGTGTACGTGGCGTGTGTGGCCTGGAGGGGGCGCTCTGGGACATGTTCGTGGAAGAGGAGATGTTTGAAGGCAGTAACCTCTACCGCTGTGGCCAGTGTGACCAACTAGTCACTGCTGCTAAGTCTGCCAAGCTGAGGAAGCTCCCTCCCTTCCTGACAGTGTCTCTGTTGAGGTTTAACTTTGACTTTGCCAGGTGCGAGCGTTACAAGGAGACTGGTCGCTACACCTTCCCTCTCACCATCAACCTCAGGCCCTTCTGTGAACAGACTGAAGACGAGGACTCGGAGTACTCCTATGAACTCTTCTCTGTCATCATCCATAAGGGAGGCTGTTATGGCGGCCATTACCACGTCTACATCAAAGACATGGACCACCTCGGCTTGTGGGAACCGCCGGAGGAGGATTCCAAACCCAAGGTTCAGAAGAAGAAGGAAGTGAGAGTGTATCCTGAGCCGGAGAAAGACGACCCTCTATCTGTACTCTCCTCCATAATAGCCCAGGAGGAGAGCAGGAGCATGCTGCTGGACCAGCTGGGCCAGAGACTGATGGACAAGATCGGTTCTTCTTGGAGCAAGAAGTACAGGAAACTCCACGGCTCCATAGGCAAGttCCTCCAGAACCACAGTGACGTGTTTGTGTTGGTCAATAACGGCACTCGGGTGGCCCTGAAAGCCAACCCCCCTAGCCCGGTGACCCAGCACTCCAGCCCAGCCCACACAACCCCTGGCCCTAGCTCTACCCCAGACCCAGTCCACAACAACACTGCCAACGCCCAACCAGAACCAGGACTGGAGACGGCACCAGAACCACAGgGCAGCCACTGGTTTGATCTGAATGACTCCACAGTGACGTCGATCCACGAGAGAGACGTAGAGAAAATGTACCAGGGAAAGGAGAGTGCCTACATGCTGTTCTATAGGAAGACACTGCTACGCAGGCCTTCTGGAGCCCTGAGGAATCCTGGGTATAAGGTTCCCCCTCACCTCTTGGAGATGGCtgaagaggagaacagaagactACAACAGAGACGGGAGGAGTTTGAGGCCAGCAATAACAGTGTTGAGCTGCGTCTCCACCTAGCGCCGCGCTATAGGTTGGAGAACGGAGCTCTTAAGCCAATCAGCATAGAGCAGAAAGAGGCCACCAACCTCACCTTTGACCTCCGCAGGACCGTAGGAGACTTGCGAATGATCATCTACCAGatgcaGGATCTCTGGGATGGGGATATGGCTCTGACTGTGGCCAGAAGTCTGCCAGCCGGCCTTCATCTCTACAACACTCtcacagATGATGAGGTGTCTCTCTACAGTGCAGGCATCTTGACCGGCACTGATCTGTTTGTGTGGAATGGCAGAGAGGTTTGTGGGGCGGCTGTCCAAACAGGAGCCGAGTGGGAACCAATGCTGCTGACCGTGGTTCGCCCCTCtctgggagaagaggaggaggacaggggaggcgagggagaggaaggaggctCGGGGCTGTCGAAGGAGTCGAGGGGGTTCGCTGGGAGGGTGACTctaggagaggtgagggaggcgTTAGGGGAGCCACAGGAGAGCCTCCTGTGtcaggagaagaggggaggggagggagggggggccaGCGGGTGGAGGGTATTCCCTCCTGGAGACATGCAGAGgaccctgaaggagctggcctTGAAGGATGGAGACGCACTGCTGGTGCTGGAGCCACAGACACAGGACAGCAGtgtgttcagtgtgagtGGTGATATGGTAACCGTGACAACACCATCAGACTGTCGCTGGCTTCAGGTGGAATACCGACCAGAGAGAAgacgacgaggaggaggagagggagaggaagatgaggagaggatgagggcaaAGGTCCCTGCCTCTGGAAACATGCTGCTGTGTGAGGTGAAACAGAGGGCCATAGCAGAGCTGCAGCTACAGGAGCAGCTAGCAGGTGTGGCATGCTGTCTGAGGCAGGTCGACCGCACAGGGAAACTCCTGCCCCCAGTGTGTGAGGAGCTGAGCGTTCGTGACGCTGGGGTTAGGCTGATGacctccctgtccctctgtcctggAACGGCCCCCaaagacacacagctgttccTGTACTTCAGTGTGGGGACAGCACCCTCCTCTGGCTTGGAGGGGGAAATCATTGTAGAGCGGTCCAGCACAGTTAAACAGTGTCTCAAGAAAATGTTGGAGTCAGCAAGACTTGAAGgggACGGTTGGCATCTAAGGAGGCTGGACTGGtgtgaggaggtgggagaggcTTTGATGGATGAGGAGGCGTCTCTCTCAGAGCTGAAGATGAGTCATGGAGACGCTCTGGTGATTACTGAGGGACGACTTCCTCCCAAGggttttCTGAAGCTGTCAGTCTGGCTGTATGTGGAGCCGAGAGCCGATCCCGTGGTCTCCATGGAAACAGAGGTCAACGGCACAGCCGAGGGGTCCACGGAGGGTCAGAGGTTGGAGGTCATGACtgcagtgggcGGGGCCATGGTGGAGCTGAGGACTGTGGGACAGGTGGAGATCTCAGAGGAGGCTACACTGGAAGAGCTGAAGActcagGTGCTGACCCTGCCGGCgctgcagtatgtgtgtgtgcccactCCTGCGTTTCTGCGTGTGTGGCAGCTGGAGGGACAGAGACTGACACGTATCctcagaggacaacaacacacactcagGAAGTTGAAGTTGTGCAGTGGGGTGGAGTTTTGTGTGCAGCAGCTACTGAGAGAAGAGGATCTTGGTCCTAAGGAGGTGTTGCTGCGTGTCCAGATGGGGGTGCCAGGGGAGCAGGGTTACTACCCTCCAGAGGACCTGGTCTGGGATGCTTCTCGAGACCCTTCCCCCAGATCACTACGCTCTGCCCTGGCCTCAACATACGGCCTCTCTCCTGACTCCCTGCTACTGGCCAAgcaccagccacacacacacacctgggagaCTTTCTCCAACTGGAGCCAGCAGGTGTCCAAacggaagaagaagaaaaaggcgGAGTCTCTGCTCGGAGCGCCTTTCCACCTTAAAGACGGTGACATCATCGGTGTCAAGAACCTGTTGATTGACAATAACCGGGACTTTAGCACCCAACAGGATGAGCAGAGGTTGAGGGAAGAGAAGGAGCAACGCAGGAAAGGAGGGCAGGGTGCGGGGGCTGAAGTTGAGAACAACCAAGGGGTGGGACCAGAGAAGAAGATGGGGCCAATCAAGGCCAGGAAGCCAGAGGTGGCCTTGTCAATCAACGTGGGGGTGTTCAGATAGCCTcgccttacacacacacaaacaaacacatacagtacacatgcgtgcacacacagaCTTTCTTACCGTGGCATCGCTCAACATCACGAACAGTCTTCTGGACATCTGTTTGTGtgccaaacattttttataatgtgTTCACACAGCATGACCCCCCCCATAGATCTGCTATCTTCTGCTAGTGTTGGTCTGGTGGTGGGATGACTTACTGGTTCGCTATACAGATCTCTGTCGACTCAATGTCACAAGCTGCAGTCTCTgactctccttccatctctcagTCACTACACCTGGATCCCTTCTCCCCTCTACATGAGATCCAATAGGAACCAGTATTTCTACATGAGATCCAATAGGAACCAGTATTTCTACATGAGATCCAATAGGAACCAGTATTTCTACATGAGATCCAATAGGAACCAGTATTTCTACATGAGATCCAATAGGAACCAGTATTTCTACATGAGATCCAATAGGAACCAGTGTTTCTACATGAGATCCAATAGGAACAAGCATTTCTACATGAGATCCAATAGGAACCAGTATTTCTACATGAGATCCAATAGGAACCAGTATTTCCACTCATAGTACTGGGTGTATTACATATATATTGGTATGTATTTACAGTATCTGCTGACTAGTTTGCAATGGTACACACCACAGAGGTGTAGATATGTACCAGTAGATTATAGATAATATATACACCTATATTTCTAATAAGAGTTAGTGGGTTTATATCCATGCCTTAACATGGACGAGCCACAATTAAGCTCAGTCCGGAATAGTCCCCCTTACCTcatttctctacctctctgttgcgccctctctctctctacctttctttcCCTCCTAACTTCATCTTCGCTTAGTGGTCTCACCCTCTCGCCATTTTCCTTACATGGGAAAGAGTCCAAGTGTTTTCTCTGTATCCCATCATGCCTCTGCACCAGAGTTGATCACGTTAATCATGCTATCATTATGTTTGTTTCATGTGCATGCAGTGGGGGTGTGTGGGCGAACTTCAGGGAGTTAAAATAATTCATGGATCGTTTGACTAATATGTCATACATAACTTTTAGAAATGACGGTTGGACAATGAATACGAGCGACTTTGTTTTGGATTATGAGATTATTTGATTTCCTAACTAATCTGATGTTTTTATTTTTGCATTTGCTGGAAGTATAACTGAAATTTAGTTTTGAGTACTGTATGACTTCTGGGTCAGTGCCAAGATGCAAGGACAGATGGAGAGTTTTGGATTAAATACAGAATAAAACGGATCAAGAAAGCA

Function

NR:

description
ubiquitin carboxyl-terminal hydrolase 40-like

GO: NA

KEGG:

id description
K11869 USP40; ubiquitin carboxyl-terminal hydrolase 40

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952205.1 True 5719 mRNA 0.51 31 19546585 19561223

Neighbor

gene id symbol gene type direction distance location
LOC110497083 LOC106574571 coding downstream 6607 19503499 ~ 19539978 (-)
LOC110495762 LOC106574525 coding downstream 44532 19495326 ~ 19502053 (-)
LOC110495761 LOC106574524 coding downstream 51463 19489061 ~ 19495122 (-)
LOC110495759 LOC106586086 coding downstream 70718 19474309 ~ 19475867 (-)
LOC110495751 LOC106574518 coding downstream 162084 19322656 ~ 19384501 (-)
LOC110497085 LOC106574572 coding upstream 791 19562014 ~ 19570695 (-)
LOC110495764 LOC106574529 coding upstream 13012 19573628 ~ 19577133 (-)
LOC110495765 NA coding upstream 17269 19578492 ~ 19581234 (-)
LOC110497086 LOC106574531 coding upstream 23611 19584834 ~ 19648751 (-)
trnan-guu-14 NA coding upstream 115436 19676659 ~ 19676732 (-)
G1524598 NA non-coding downstream 148783 19397331 ~ 19397802 (-)
G1524548 NA non-coding downstream 224549 19321833 ~ 19322036 (-)
G1524545 LOC106574515 non-coding downstream 230079 19315112 ~ 19316506 (-)
G1524541 LOC106574515 non-coding downstream 248122 19295613 ~ 19298463 (-)
G1524679 NA non-coding upstream 9520 19570743 ~ 19572529 (-)
G1524702 NA non-coding upstream 105887 19667110 ~ 19669050 (-)
G1524746 NA non-coding upstream 146461 19707684 ~ 19708154 (-)
G1524769 NA non-coding upstream 181566 19742789 ~ 19745279 (-)
G1524791 NA non-coding upstream 287146 19848369 ~ 19848839 (-)
G1524473 LOC106574589 other downstream 382459 19143985 ~ 19164126 (-)
G1524311 NA other downstream 797190 18749125 ~ 18749395 (-)
G1523241 NA other downstream 979338 18561906 ~ 18567247 (-)
G1523234 NA other downstream 1004874 18541145 ~ 18541711 (-)
ghs-r ghsr other downstream 1100024 18445083 ~ 18447303 (-)
G1524755 LOC106581475 other upstream 161522 19722745 ~ 19730068 (-)
LOC110497093 LOC106574562 other upstream 1009873 20558557 ~ 20595753 (-)
G1527230 NA other upstream 2700833 22262056 ~ 22262462 (-)
G1528018 NA other upstream 3310822 22872045 ~ 22885833 (-)

Expression


Co-expression Network