LOC110497085 (LOC106574572)


Basic Information

Item Value
gene id LOC110497085
gene name LOC106574572
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19562014 ~ 19570695 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952206.1
TCTGGGGGTGTGAGGGGTGTTCGTCTGTCCCGTCCTCACCCTTCCCTGGACTTCCCGTCCTCCCAGCACCTCGTCAACTGTCACCTCTTCCCCAGAGAGTTCTCCATCGTCACCACCTTGAAGGTCAGCCTCGTCGCCCCTAAGAAAAACGAGTACATATTTTCTGTGGTGGAGGAAAAGGAAGAAGAGGACGCAAGGATTggaaagaggaagggggagacacAGGGAGGAACTGATGGAGATTGGtacagagagaaggatggagaacgaggagggagggatgacgaGAGTGATGAAGAgcgggatggagagacagatggagggggagaaagacTAATGGacggagagaagaggaagggaagtagagatggagagaacagcaACAGTCAGGGACGGCTTCTGATTGGCCTGCGGTTCTCCAGAGACAGACTCTACTTCCTGTTCAGAGGTCGCAGCGGGGGGGTCATGGCGCACTGGGTTTTCCGAGGCATCGAATTGGCTGATGATCGCTGGCACACGTTGGTTTTAGCATTTAGCGGACACTACGCTACTCTCACTGTGGACTGCAACACACACCTGGAACTGGTTCACTCCAAGTCGTTGCCCTCTGACCTTAGTGTTCAGGGTTCCAGATTCCACATCGGCAGCCGAGGGAGATGGAATGGCCTGTTCTCAGGTCTGATCAGACAGCTGGTCCTGGTGCCAGGCTCTGATGCCACCCCTCGTGTCTGCCCATCCTCCAACCCCGGGCTGGCAGAGCTGTCTGTGCCTGCGGTACTGCTAGACCTACCACAAAAAGAGACTAGGAGTGACCTCACGCTGCCTTCATATGAGTCAGAGGTGCGGGTGTCTGTGGGGCTGGAGAAGTCCTGTTCCAGTTCAGTAAGAGGACAGCTGTGGTTCAACCCCATCAGGAGAGCTCTCTACCTCTGTGACGGTGCACTCTGGGTCCCCATGCTGCAAGAGTCCCAGAGACTAGACTATGTCTTGGAGCAGCAGGTCCTCTCCACCAGTTCAGAGACGTATGATATTGAGGTGTTCAGTGTACAAGGGCTGGGTTTGATGGCAGCAATGGCCCACCGCTCCCCCTCCCTGGGCTCTGCAGTCTACCTCTGGAGAGATGGAGGCTTTCACCTTTACCAGAAGATCAGCACACATGGAGCTCTCTCCTGGAGACACTTTACGATGGGGAAGAAGATATTCCTGGTGGTGTCTAACTCCAGGGAGAGCACAGGGAAGGAGGAGACAGTGGAGAAAGATGAACTGTCAGTGATCTACAGGTGGAATAAAAAGACACAGAGGTTTGTTCATTACCAGGCGCTCCAGACACACTGTGCACGGGACTGGGAGGCCTTCCGCATCCAAGGACACACCTACCTCGCCGTGGCCAACCACAGACAAGgTAATACCAACCACACCATAGACAGTGTGGTCTACAAGTGGGACCGTGGTACGCAGCTGTTTGTACCACACCAGGCCCTGCGGACCTCTGGGGCTTACGACTGGGAGGCCTTCACGGTCGGACCCTACCACTTCCTGGCTGTGGCGAATGCGTTTGACGGACAGACCACTCACGTTGACTCGGTCATCTATGTCTGGGTGGATGGAAGTTTCCGCTTGTTTCAGACTATTAAGacgttCTGTGCCACAGACTGGGAGATGTTCCAGATCGGCAGCAGGGTCTTCCTGGTGGTTGCTAACGGACACCAACTCCATGGCAATGGCCCCGGTCGCTATGCCATCAACTCGACCATCTACGAGCTGGACATGAGCTCTCAGCTGTTCCTGCGTTTTCAGGACATAGTCACATACAGTGCTGTTGACTGGGAGTtcttcacagtaggagaggagagttacCTGGTTGTTGCAAACTCCTTTGATGGAGAGTCTCACTCTCTGAACAGCATTATCTACAGGTGGCAGGGATACGAGGGGTTTGTTCCCATTCACCGGCTCCCCACCATCGGATGCAGCGACTGGGAATTCTTTACTTCCGGAGAGGATTCCTATCTGATCTACTCCAGCGCCACAGCACCTCTCTCCAAAGTCTTCCGTCTGAAAACACACTGACACGTGACACAATGTCATATCAGGGACAACATGGAGAAACATACAAAATGAAATCTCAACTGATGTAATAATGAATGTTACATTATGTTGTTGTACTGGGCCACAtttgcagagaaagagagagtattaGTAGATACACATGTTTGTGTGTAAGTACTGTATATAACTTTAACCGTAGTCATATTTGTTGCCTATAATTTTGTGAAAATTATTTATTGAGGtaatagaaatgtgtaaaaaATACATTATGTTTCATTTGTGTCTTACTGCAAATTCTACCGCTTATGTAAGAATATTGTTTCAGAATGATTTTATGAAATCTATATTTAAGCGGGTCCCATACTAGGGGAGTAGTGAATGGAAACTGTAGAGTTCCACGGCTTTTGCCCAATCTGCATTTTCTGTAAAAGCTGTTCACCACTTCAACCAACGTCCAGAAACCTAAAagagatacttcaggattttggcaatttttgtatttatttaacctagCCCTTTATCGACTTCTTCAGAGTCAGataaactcatggataccatttttatgtctctgcatgcagttGAAAGAAGTTGCTAACTCGCGTTAGCGCAATTACTGgtagtctatggtaactgctagcatgctagtagataccatagacttccagtcattgcagtaatgctagttagcaatggcTCGCAAAACTACTTCTAACTACTGGatacagagtgaaagagagtaaTCCGGCTCCAGGTATTTTACTGGTTTGTGACTCACCGACACCGTCCCCGGTTAGAGGGGAATAAAGCTGCCTAAGAGTTAACACACAGGAGCTTTAAACACACTGAGGAAGATGAACATGGGGATGAAAAGTGGGAGAGGTAGTGGAATGGTAATAGTTCTGTTGAAGGAAATGAAAGGcaatgaatatactgtacatacgaTAACACGAGAGCATAATAACAGAAATAAAGGTGTGTATAAATGGCATATAATCCCTGAACATGTT

Function

NR:

description
PREDICTED: thrombospondin-type laminin G domain and EAR repeat-containing protein-like

GO: NA

KEGG:

id description
K24437 TSEAR; thrombospondin-type laminin G domain and EAR repeat-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952206.1 True 3056 mRNA 0.49 12 19562014 19570695

Neighbor

gene id symbol gene type direction distance location
LOC110495763 LOC106574527 coding downstream 791 19546585 ~ 19561223 (-)
LOC110497083 LOC106574571 coding downstream 22036 19503499 ~ 19539978 (-)
LOC110495762 LOC106574525 coding downstream 59961 19495326 ~ 19502053 (-)
LOC110495761 LOC106574524 coding downstream 66892 19489061 ~ 19495122 (-)
LOC110495759 LOC106586086 coding downstream 86147 19474309 ~ 19475867 (-)
LOC110495764 LOC106574529 coding upstream 3540 19573628 ~ 19577133 (-)
LOC110495765 NA coding upstream 7797 19578492 ~ 19581234 (-)
LOC110497086 LOC106574531 coding upstream 14139 19584834 ~ 19648751 (-)
trnan-guu-14 NA coding upstream 105964 19676659 ~ 19676732 (-)
LOC110495768 LOC106574536 coding upstream 191779 19762474 ~ 19793454 (-)
G1524598 NA non-coding downstream 164212 19397331 ~ 19397802 (-)
LOC110495751 LOC106574518 non-coding downstream 183908 19322656 ~ 19384501 (-)
G1524548 NA non-coding downstream 239978 19321833 ~ 19322036 (-)
G1524545 LOC106574515 non-coding downstream 245508 19315112 ~ 19316506 (-)
G1524541 LOC106574515 non-coding downstream 263551 19295613 ~ 19298463 (-)
G1524679 NA non-coding upstream 48 19570743 ~ 19572529 (-)
G1524702 NA non-coding upstream 96415 19667110 ~ 19669050 (-)
G1524746 NA non-coding upstream 136989 19707684 ~ 19708154 (-)
G1524769 NA non-coding upstream 172094 19742789 ~ 19745279 (-)
G1524791 NA non-coding upstream 277674 19848369 ~ 19848839 (-)
G1524473 LOC106574589 other downstream 397888 19143985 ~ 19164126 (-)
G1524311 NA other downstream 812619 18749125 ~ 18749395 (-)
G1523241 NA other downstream 994767 18561906 ~ 18567247 (-)
G1523234 NA other downstream 1020303 18541145 ~ 18541711 (-)
ghs-r ghsr other downstream 1115453 18445083 ~ 18447303 (-)
G1524755 LOC106581475 other upstream 152050 19722745 ~ 19730068 (-)
LOC110497093 LOC106574562 other upstream 1000401 20558557 ~ 20595753 (-)
G1527230 NA other upstream 2691361 22262056 ~ 22262462 (-)
G1528018 NA other upstream 3301350 22872045 ~ 22885833 (-)

Expression


Co-expression Network