LOC110495764 (LOC106574529)


Basic Information

Item Value
gene id LOC110495764
gene name LOC106574529
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19573628 ~ 19577133 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571180.2
AGTGTCTGCGGAACGAGAGACCAAAGCGCGTTCCCGTGTTTGCGGAGGAGAAGAGCATATAGCTTAAAGAGGTGCAAACGAAAACACAGTCAAAATTACATTTTAACCCGCAAATCCTTTAAAGAAAACCCACCAAAATGTCGGAGGAGAAACCAAAGgagGGCGTGAAGACTGAGAACGACCACATTAACTTAAAGGTAGCCGGTCAGGACGGCTCTGTGGTTCAGTTCAAAATCAAGAGACACACTCCGCTCAGCAAACTGATGAAGGCCTACTGCGAACGTCAGGGGCTCTCGATAAGGCAGATCAGGTTCAGGTTTGACGGACAGCCAATCAACGAGACAGACACACCTTCACAGCTGGAGATGGAGGATGAAGACACCATAGATGTTTTCCAACAGCAGACAGGTGGTCTCTGCTAAGCCCCTCCTGTTACAGTGATTGACATACCCAAACCACGCCcactgctcctctcctccagtcactTCAGCTTCTGTGTTCCtttgttgttttaaaaaaaaatgtttgtctcAGTTTTGTCCTGGGGTGTAGGATTGGGATGAATTTGCCCCCTAGACACTGATTTAAGGTCAGTTATTAGTTTACCCCATATTGGATGAGGTTAGGTTTAGGACACgatgagctgatcctagatctgtggtaagGGGCAACTTCTATTTTGAGGCTTCCCCATCGTCTGTTTCCTTGATCTTATTTTAAAAGATGTCTGGTGCGTTTTTGGATGGGGTGGGGGGAGGGCTCCCTTCAAATGTCTGTCTTAGTCAACATTGAACTCTTGAACTGTCTTGGACAGCTTCTGGGTCTTTCCAATGTTAAGAATCATGAGTTTTGATCTAGAAACAACCCCCTACACCTAAGCCACGTGTAGTGTTTTGTATTTATCCAACACCTTAAATCTACACGAAGTGCCTAGGTGTTAGGGGGTGGCTTCTGGACCCTTCCAATGGTTTGACATGGGGGACGCCCTGGTTTTTCCAAGGGTGCATCTCAAGTCTTATGTTCCCTCTCCTTAATTTGGCACCGATCTGAACATTCAGGCTAAGGTGGATGCTGACCATGGAATATGCTTTCACATGTCCAGTTCTTTAGTGTCAGTTTTACGAGGAGAACCCTTGTCTCAAGGAAGCTACTTATACTGTTGAGATGCACCCCTAGTTTTTTAGGGCAGTCAAACGGGAATATTCCCTGATACCATATGGGgccatttctttcttttttcagTGGTCAGTTCATACAGCAGCCCTGTCAGTGACTCTGCTTTCGGTGTTTGGGTGGGGGTGTAAGGCAGGAGGGAGAAGTCATCCTTGAacactgatacagggtcagatcaTTTGCATCCCCGGACTGGTTAATGTTTTGGGGGTTCTGGTTttctgatcctaggtctgtggttaGGGGCTACGTCTACTTGGAGCATAAGGGGAGGGGCAGTTAAGTTCTTTACCCACATGTTTTGTCATATGGTATTTGTTTGGTTTCTCTACTGATTTGTACATTGTTTGGCGTCTTTTACTACTGTAAACAATAAATATAGTTTGGTACTCAGA
>TU1745684
CCGTGTTTGCGGAGGAGAAGAGCATATAGCTTAAAGAGGTGCAAACGAAAACACAGTCAAAATTACATTTTAACCCGCAAATCCTTTAAAGAAAACCCACCAAAATGTCGGAGGAGAAACCAAAGgagGGCGTGAAGACTGAGAACGACCACATTAACTTAAAGGTAGCCGGTCAGGACGGCTCTGTGGTTCAGTTCAAAATCAAGAGACACACTCCGCTCAGCAAACTGATGAAGGCCTACTGCGAACGTCAGGGGCTCTCGATAAGGCAGATCAGGTTCAGGTTTGACGGACAGCCAATCAACGAGACAGACACACCTTCACAGCTGGAGATGGAGGATGAAGACACCATAGATGTTTTCCAACAGCAGACAGGTGGTCTCTGCTAAGCCCCTCCTGTTACAGTGATTGACATACCCAAACCACGCCcactgctcctctcctccagtcactTCAGCTTCTGTGTTCCtttgttgttttaaaaaaaaatgtttgtctcAGTTTTGTCCTGGGGTGTAGGATTGGGATGAATTTGCCCCCTAGACACTGATTTAAGGTCAGTTATTAGTTTACCCCATATTGGATGAGGTTAGGTTTAGGACACgatgagctgatcctagatctgtggtaagGGGCAACTTCTATTTTGAGGCTTCCCCATCGTCTGTTTCCTTGATCTTATTTTAAAAGATGTCTGGTGCGTTTTTGGATGGGGTGGGGGGAGGGCTCCCTTCAAATGTCTGTCTTAGTCAACATTGAACTCTTGAACTGTCTTGGACAGCTTCTGGGTCTTTCCAATGTTAAGAATCATGAGTTTTGATCTAGAAACAACCCCCTACACCTAAGCCACGTGTAGTGTTTTGTATTTATCCAACACCTTAAATCTACACGAAGTGCCTAGGTGTTAGGGGGTGGCTTCTGGACCCTTCCAATGGTTTGACATGGGGGACGCCCTGGTTTTTCCAAGGGTGCATCTCAAGTCTTATGTTCCCTCTCCTTAATTTGGCACCGATCTGAACATTCAGGCTAAGGTGGATGCTGACCATGGAATATGCTTTCACATGTCCAGTTCTTTAGTGTCAGTTTTACGAGGAGAACCCTTGTCTCAAGGAAGCTACTTATACTGTTGAGATGCACCCCTAGTTTTTTAGGGCAGTCAAACGGGAATATTCCCTGATACCATATGGGgccatttctttcttttttcagTGGTCAGTTCATACAGCAGCCCTGTCAGTGACTCTGCTTTCGGTGTTTGGGTGGGGGTGTAAGGCAGGAGGGAGAAGTCATCCTTGAacactgatacagggtcagatcaTTTGCATCCCCGGACTGGTTAATGTTTTGGGGGTTCTGGTTttctgatcctaggtctgtggttaGGGGCTACGTCTACTTGGAGCATAAGGGGAGGGGCAGTTAAGTTCTTTACCCACATGTTTTGTCATATGGTATTTGTTTGGTTTCTCTACTGATTTGTACATTGTTTGGCGTCTTTTACTACTGTAAACAATAAATATAGTTTGGTACTCAGACTCCTTGTCACGGCTCCTCCTTTAAAAGTGTGATATAAAATGGGCTCATTCAGTGGACTGCCAGTTACACATGAGAATCATGAATTGTATGTTCAATGTATTGTTTATAGTCGTATCTACTACCAATTGTGTATGTTGGACCCTATCCAGCACTATTTGAAAGTACTGTAGCTGAAATGTATTCTCAGCTGCATAAAAAGACCAGCAGGGGGTGCTACTGTCTATTGGTACAGTTGTCTGTCTTCCCTTTCTATCAGCAGGTCCCAATTCAGCAGAAGTAAAGTGAGGACATTATCCCGAGTGCCTGTATTTGTGTGCTTGTATGTTTCTGTTCAAGCGTTTAACCGCTGTGATTAGATTCTAATTTGGGCCAAAGCCGTCCTTTCCTCCGGAAACCGATAAGTGGTTGAGGACTGTGTCAGTTTGTTATTAGGTGAATGGAGAAGTCTACCTCTTGTCCTTGAAGTCTTCCCATGGAGGAAGCACAAGTTCATCCTTGGGGTCTTCTCTGCCGAAATCCACTACCCTCCTTTGAATAAGCTGCTGTTTTCTTGGAGCACCTGCATGCTTACATTTAAATACTAAATACATTCAAATTAATTTTGAC

Function

NR:

description
PREDICTED: small ubiquitin-related modifier 3, partial

GO:

id name namespace
GO:0016925 protein sumoylation biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571180.2 False 1568 mRNA 0.46 4 19574235 19577133
TU1745684 True 2142 TUCP 0.44 4 19573628 19577100

Neighbor

gene id symbol gene type direction distance location
LOC110497085 LOC106574572 coding downstream 3540 19562014 ~ 19570695 (-)
LOC110495763 LOC106574527 coding downstream 13012 19546585 ~ 19561223 (-)
LOC110497083 LOC106574571 coding downstream 34257 19503499 ~ 19539978 (-)
LOC110495762 LOC106574525 coding downstream 72182 19495326 ~ 19502053 (-)
LOC110495761 LOC106574524 coding downstream 79113 19489061 ~ 19495122 (-)
LOC110495765 NA coding upstream 1359 19578492 ~ 19581234 (-)
LOC110497086 LOC106574531 coding upstream 7701 19584834 ~ 19648751 (-)
trnan-guu-14 NA coding upstream 99526 19676659 ~ 19676732 (-)
LOC110495768 LOC106574536 coding upstream 185341 19762474 ~ 19793454 (-)
LOC118941046 LOC103370040 coding upstream 283071 19860204 ~ 19864234 (-)
G1524679 NA non-coding downstream 1706 19570743 ~ 19572529 (-)
G1524598 NA non-coding downstream 176433 19397331 ~ 19397802 (-)
LOC110495751 LOC106574518 non-coding downstream 196129 19322656 ~ 19384501 (-)
G1524548 NA non-coding downstream 252199 19321833 ~ 19322036 (-)
G1524545 LOC106574515 non-coding downstream 257729 19315112 ~ 19316506 (-)
G1524702 NA non-coding upstream 89977 19667110 ~ 19669050 (-)
G1524746 NA non-coding upstream 130551 19707684 ~ 19708154 (-)
G1524769 NA non-coding upstream 165656 19742789 ~ 19745279 (-)
G1524791 NA non-coding upstream 271236 19848369 ~ 19848839 (-)
G1524820 NA non-coding upstream 273941 19851074 ~ 19851287 (-)
G1524473 LOC106574589 other downstream 410109 19143985 ~ 19164126 (-)
G1524311 NA other downstream 824840 18749125 ~ 18749395 (-)
G1523241 NA other downstream 1006988 18561906 ~ 18567247 (-)
G1523234 NA other downstream 1032524 18541145 ~ 18541711 (-)
ghs-r ghsr other downstream 1127674 18445083 ~ 18447303 (-)
G1524755 LOC106581475 other upstream 145612 19722745 ~ 19730068 (-)
LOC110497093 LOC106574562 other upstream 993963 20558557 ~ 20595753 (-)
G1527230 NA other upstream 2684923 22262056 ~ 22262462 (-)
G1528018 NA other upstream 3294912 22872045 ~ 22885833 (-)
LOC110495841 LOC106574435 other upstream 3582425 23008547 ~ 23168591 (-)

Expression


Co-expression Network