LOC110497087 (LOC106574533)


Basic Information

Item Value
gene id LOC110497087
gene name LOC106574533
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19683836 ~ 19693492 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951422.1
ATTCACCTAGTTCACAGTACAATTAGGTTAACGGTGACCGTCTACCTTTGCAATTTATGGGTgttattttattgatttattttgcgTTGATTCATTTGAAGCCCAAAATGCATTTAGAATGGCTCTCCAATCGCGCGTAATTTAATTCAGGAGGTTATACAAACTTTCAGTGTAGCAGGTTTCATAAAAAGCAACCAGTGATTTTGGACGAAGTCAATTCTCGGTCTGTCTCTATTCACCAatccatttattttatttgaatgcacacatttgttttacatAGATGTTATAGACTTCACTGATATGGATGTTCGTTTGGAAAACCACTTGGATTATTTTATCCACGACAATACTGCTGCTGCGGGCTTGAGTCCAGAAATGCTGGCAGTTGCACGGGAAGCCTTCCGTGCTGGGGACTTCAACCTTCTTGCTGAGATATACGGCTCCCAGCTGGCGGACCTCCGACACCCGGACCGGAGCCTCTGCCTTCTGAATGCGGATGCTCTCAGCCGTGCAGGGCGGATAGCGGAGGCTCTGGATTCATACTGCACCGCCGCCAACTTGGACAGGTTACGACCAAACGAACTAGGGTCTCTCGTTGACTGTATTGCGCACACTTTGCGCGTAAAAGAATGCCTAAAAGAATGCACAGACTCCAATGGGGTTTCCGAGGATGAGCATTCGTTGGACCTGTTCTCATGTCGGCTTTGCAAGGGCTTGTTAATCGAGCCAACAACTTTGGAATGCGGCCATACATTCTGCAAACCATGCATTGAGGATGACGGTGTCAAAGAATGTGAATTCTGTCGTTACAAACTGAACAAAACAAATAGAGAATTAAAGCCAATCGGGTTTAAAGTGAATGTAGTACTCAGTGGGCTGTTGAGTAAATGGTTTTGTGCAGAGAGTGAAGCAAGACGATGCTGGCTTGAAGGGGATAGAATGCGGAACGAACAGGGCTTTATCAACGCACTTGAAAAATACAACTACGCTCTTGaaaaagCCCCCTTTATGTGTGGGCTGCTGGCCCGACGGGCAGAGCTGCATATGGCGATGAACAACTTCAGACAGGCCCTACAGGATGGAGACGCCATGTGTCGACTGACGCCCCTCTCTCCCAAGGCTCACTACGTGAAGGCCCTGGCTCTGAACAAAGCCGGTTATAATGAAGAGGCTCTGCAAGAATACCTCTACTGTCTGGCTCTGAAGCCAGACTGGACCTCAGTCAAGCTGGAAACGCAAAAGTTAAGCGACTCCACTGTGTTTCTAATGCTGAGTGAGATGTTCTCCACGTTCAAGACAGACGGTCTCCCCACGTCATCACTTCGCCTCCACCCAACAGGCCCCGCCTCCCACCTCAAACCAGCCTCCCATCTCCTCGACTCCCTCCATTCCACCCCTCGTAGATGGAGCCATACCCCTACTGGCCGTAGAGACAGTTTGTCTGACACTGGAGCAGAGACCAAGTCCTCATGTGAGGTTTCCAAGACCCTGGCTTCTGTTGTGGCTGCCTTACCTCTCCCCCCTGGCCTAAAGAGGAAGTTCTCAGACGAACCCATAGGCTCTGCACCCCCCAACAAGCTGCCCAGAAAAGTCTTGTGTTCCGATGAGTCAAGCTCATCCCAGGTGCCTGCTGCTTGTtgcagtgagaggagagaggtgccCCCTCAGCTCCTGGATAGCTCTGACATGGACTGCTCTGTTTGTATGAGGCTGTTCTACGAGCCAGTCACCACCCCCTGTGGACACACCTTCTGCATGAAGTGTCTTGAGCGCTGTCTGGACCACAACCCCAACTGCCCCCTGTGTAAAGAGAACATTACAGAGTACCTGGCCACTAGAGGGTACCATAAGACCCTGCTGATGGAGGAGGTGCTGCAGCGCTACCTGTCTGAGGAGCTGGCTGAGAGGAGCAAGGTGTACCAGGAAGAAATGGCAGAGCTCTCAAACTTGGCCCAGGAAGTTCCCATCTTCATCTGCACCATGGCATTTCCCACAATTCCCTGTCCCCTGCAAGTCTTCGAGCCGTGTTATAGGCTGATGATCCGACGCTCTATGGAGACGGGAACCAAGCAGTTTGGAATGTGCATCGCTGACGACATCAAAGGCTTCGCAGACTACGGCTGCATGTTGGAGGTGAAAGACGTGAAGTTCCAACCAGACGGGCGCTCGGTGGTCGACACGGTCGGAGTGTCCCGCTTCAGAGTGCTGAGCCACGGCCACCGCGACGGCTACAACACAGCCAAGATAGAGCACCTGGAGGACcagaaggtggagggagaggagctggCGGAGCTGCAGAAGCTGCATGACTGTGTGTACGAGCAGGCCAGCACCTGGTTCACCTCCCTCAAAGACAACATGAAGAACCAGATCGTCAGCCACTTTGGACAGCTGCCTGAAAAAGACCCTGACATTCAGGGGGGTGCCAGtggtcctgcatggtgttggtgGCTGCTGGCTGTACTGCCCCTGGAGAAGAGAGCCCAGCTAAGCATCCTGGCCATGACCACCCTCCGAGAGCGCCTCAGCACTACCCGCCGCGTGCTCAGCCTCGTCACACGCAAACACCCTCCACCGCGGCGACCATCTTCAGCAgcggcatcatcatcatcactgtagTGGCCCCCCGAGAGGTGATCAGTTTAGAATAATCTGGGCCCAGTTAGGAGAAATCCAGATTGTCAAAAGTTACCTATCGGCTCtgattaaatgcatagaaatataatgaatagaacgggAGTCCCCGTTGAAGTCGGTTATTTTtctgttctattcattatatttctatgcatttaatcctatcTGATAGATGACATCCGGATAGATAATCTTTGGAAAACTGGGCCctggagaagaagggagaggatactCCATTTTCCTCTGAAGCTCTAGCCTCAGATAAAGAGTTTCAACAGTGGGAATGATTCAGCAGTGTTGTTCATGATCTCAGGAATGGGTTGTACTTGAGTCTTACAAAAAGGATCGATGGACTAGCCCTACCCAACCAAAACACATAAATGTGTGTCAGGTTTGCGCACATATCTTTGGGTCAATTTCATTAAGTCCAGATTTGTCATGTGTGGTACATTCGTTTATTTTGTTCTTATTTTATTGTTGGCCTTTGTACAAATGAGGCCTTAATTTATttttgcaatatgttttttttctacTATTTGTCATGTGAAGCCAATTTTCATGTACAGAAATGTAGCGTTTTTCTATGGGACATAATGAATAGAATGCACACCATCACTTACTGGAACAatatgttctactgtatgttggtAATCATGTCAGGAGGGAGCGCTTGATGCAAGCAAGTGAAAAATAGCAGCACAGACATTGTAGTAGCACCAAACATCCACAGGGTGGCAGTAAGTGTGAGCAAAGACGATCAGTGCAGACAACCCTACATTTGAACAGGTGTTTTTTGCGGAGGACAGATCCACCCCTTTCCTCTCTGTCACAAAGACAATGGACAGTAGGACAACACTCCTGTCATTCAACAGCCTAGTTTAGTTAAATGAATCAAAGCTTGATTAAATATAGTAAGCCTAAATCATGTCTTTATAAGTGGCTTCATAGCTCGTCAACCATCTTGATTAATTAACCAATGATTTTCAGCTTGCTCAATTGCACATCGGAACCAATGTTTTCAGCCTCTCCATGGTGTGTTTTCCCAGCAACACTGCTGTGTTCTGATCTAGACAGACTGGTCCCAGGTTGAAGTCCCTTAAGGGAATGTTCATCACTGGATGCTGTACAGCAGGGGTGTcgaactcattccacagagggccaagtgattgcatttttttatttcaattaagacctacccaaccaggtgaggggagctccttgctaattagtgaccttaattcatcaatcaagtacaagggtggagcgaaACGCTTCAGGCACTCCGCGGAATGAGTTTGATGTGCTGTACAgtaacatttttgttttttacagtaACAATGAGGCCAATTGGTGTTTTTTCCCAATGTGCTGTTGTGAGGCATGCATAGACACTCGCCTTCATAGTTATCTACATGAGTCTATTCCAAAATCACACAGTGGGTCTCTTTCCCCCCCCCACAAACAGAGGTTGTCAAGAGGCCTGGGCAAAGGCACAACATATTCCATATTCCAAATTGTAAGGACTGGTGTACTGTGTGGTCACCACATTAAAAGCTTCTGTGACATGGCATATCTCACCCACACAGTCAGATCTTGGAGAAGCAGCCAGGTGAGTAATTTGGGTTACTTAGAAGTCAGAACCGAAGACGACATGTCATATTTGTAGACAATGAGTCACCTTCGTGCTCCGTCATCACCATGTTGGAAGGATCTGGATTCTCCCGAATTGATTCATTTCCAAACCCTCTTGATAAACACACACGCCATCATTCTCccagaccagtggaggctgctgagaggaggacggctcctAATAATGGCTGGATCGGCGCGAATGGAATGGCTGCAaaccatgtttgatgtatttgataccattccaccgatTCCGTTCCATCCATTACCATCAGCCCGTCCTCCCCAgtaaaggtgccaccaacctcctgtgtgcCAGACACATTTGCAGAAATTGCTCGTCACTACATTTTTGGTAACACAAATGTGAAAATTGCATTCAATGAATCTTAACTTATACATAAATGTATGATTTTGCTACTTGTGTGTTCATTAGGCCCAAAACGTGTATTATTCAAACCATTCGATATAGTTATACGTTTACCATCAATGTCACCCTCAAAAGTCAGGCCACGGTTTGTGTCTTGAAAGGGGGTCTATTTGAACAGTGGGAAAATAATGATCTGCAGATCTTTTTGGCATGGTCTCTTTGAACCATCTGTTTTATAGCCTAATAAATATTTATTGAATTCTGACCATT

Function

NR:

description
LON peptidase N-terminal domain and RING finger protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951422.1 True 4912 mRNA 0.47 10 19683836 19693492

Neighbor

gene id symbol gene type direction distance location
trnan-guu-15 NA coding upstream 6653 19677110 ~ 19677183 (+)
trnak-cuu-73 NA coding upstream 7483 19676281 ~ 19676353 (+)
trnak-uuu-125 NA coding upstream 10460 19673304 ~ 19673376 (+)
trnak-uuu-124 NA coding upstream 11590 19672174 ~ 19672246 (+)
LOC110495766 LOC106574532 coding upstream 14689 19655216 ~ 19669147 (+)
LOC110495767 LOC106574534 coding downstream 554 19694046 ~ 19745286 (+)
LOC110495769 LOC106575326 coding downstream 54935 19748427 ~ 19761242 (+)
LOC110497090 LOC106574537 coding downstream 103864 19797356 ~ 19799564 (+)
LOC118941120 LOC100136121 coding downstream 111018 19804510 ~ 19807971 (+)
LOC118941067 LOC106593417 coding downstream 118510 19812002 ~ 19813005 (+)
G1523783 NA non-coding upstream 52321 19630938 ~ 19631515 (+)
G1523765 LOC106575406 non-coding upstream 83546 19596636 ~ 19600290 (+)
G1523763 LOC106574531 non-coding upstream 89945 19593341 ~ 19593891 (+)
G1523753 LOC106574529 non-coding upstream 106740 19574198 ~ 19577096 (+)
G1523735 LOC106574527 non-coding upstream 135058 19548396 ~ 19548778 (+)
G1523871 NA non-coding downstream 154707 19848199 ~ 19848838 (+)
G1523894 NA non-coding downstream 162234 19855726 ~ 19856055 (+)
G1523896 NA non-coding downstream 164614 19858106 ~ 19858708 (+)
LOC110495772 LOC106574540 non-coding downstream 215408 19908603 ~ 19954099 (+)
G1523959 NA non-coding downstream 289733 19983225 ~ 19983481 (+)
G1523703 LOC106575364 other upstream 176580 19506392 ~ 19507256 (+)
LOC110495755 LOC106574522 other upstream 239527 19436699 ~ 19444433 (+)
G1523614 NA other upstream 305364 19377067 ~ 19378472 (+)
otomp omp-1 other upstream 476602 19206164 ~ 19211574 (+)
G1523542 NA other upstream 481747 19201027 ~ 19202188 (+)
G1523847 NA other downstream 81600 19775092 ~ 19827966 (+)
LOC110495771 LOC106574539 other downstream 203568 19897030 ~ 19900020 (+)
LOC110495777 LOC106574545 other downstream 299348 19992559 ~ 20049054 (+)
LOC110495776 LOC106574545 other downstream 372762 20065965 ~ 20110618 (+)

Expression


Co-expression Network