LOC110497090 (LOC106574537)


Basic Information

Item Value
gene id LOC110497090
gene name LOC106574537
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19797356 ~ 19799564 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951423.1
ATGGAATGGGATGTGCTGAACAGGTCTTTTCTGAGCAACGTCAATCGTCTCAACTTGAGTGGCATTGAGATGTCTTTCAAGAGGATGGGTATGAACCTCAGGATATTTAGTCAGCGTCACAAGGGACTGTCTCATTTACCTATCAACTTTCTTGAAGGACTGAAATCTTTATTGTCATTCCAGGCAGGGAGTCTTAATATTAAGGACCTGCACCGAAACACATTTATTCACACACCACGGTTGTGGTTCCTTGATATCAGTAAGAATGAGTTCACAGCCCTCACTCCAAAGCTGTTTCGCCCAATCCCAAGGCTCAACAGCCTGTACCTGTCCAAAGCCCGAATTCAGTCCTTAGATTTCCTCATAGCAGCAAACCTCAGTAGAGTCACTTTCTTGCAGGTGAGCAAGAATGACATAACAGTAGTCAATGAGACAGTGTTGCAATCTCTCCCTGCCTTGACATACCTGGACATGCAAGATAATCCTTTCACCTGTGGCTGCAGTGATGCTTGGTTTGTCCAGTGGATGGAGAGCGACAACCAAACACAAGTTGTTGGTGCAGGAGAATTTACCTGCAACTATCCTGCCGATCTAAAGGACACCAAGCTGTTGGATGTTGAGCTTCAGTTCTGTACAGTGGACTTAGGACTTTACTGCTACATCTCTACCACTTGTCTGGTCCTCCTCACCCTGGTAGCATCCTTTGCCTACCACTTCCTGAAATGGCATGTCATTTTCGGCTATTACCTCTTCCTGGCTTTCCTCTATGACACCAAGCAAAGAAATAAGCTCACACCTCATGGCTGTCAGTACGATGCCTTCATCTCCTACAACGCCCACGATAAGCCCTGGGTCCTGAGGGAGCTTCTGCCAGAGCTGGAGGGAAAGCAGGTCTGGAAGCTGTGTCTCCACCACCGGGACTTCCAGCCAGGCAAACGCATCATAGACAACATTATGGACGGCATCTACGGAAGCCGCAAGACCATCTGTGTCATCAGCCACCGCTACCTGGAGAGTGAGTAGTGCTCCCGGGAGATCTAGGTGGCCAGCTTCTGGCTCTTTGATGAGCAGAAGGACGTCCTGATTCTGGTGTTCCTGGAGGAGATCCCTACCCACCAGCTGTCACCCTAATACCGGATGAGGAAGCTAGTGAAGAGACGCACATACCTGAGCTGGCCCAGAGCTGGGGAGCAAACCGGGGTCTTCTGGCAGCAACTACGGCTGGCTTTAGAGACCAAGGACGGCTCTGCTGAGGAAAATCCCATCCTCTCTGGGGTGCAGGCTCTGTGATAGTGAAACCTTGATTTGAAACAACCATCTCACTCTGAACCTTTTCTGTATATTTACATGAGAATATTGAA

Function

NR:

description
toll-like receptor 13

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951423.1 True 1361 mRNA 0.49 2 19797356 19799564

Neighbor

gene id symbol gene type direction distance location
LOC110495769 LOC106575326 coding upstream 36114 19748427 ~ 19761242 (+)
LOC110495767 LOC106574534 coding upstream 52070 19694046 ~ 19745286 (+)
LOC110497087 LOC106574533 coding upstream 103864 19683836 ~ 19693492 (+)
trnan-guu-15 NA coding upstream 120173 19677110 ~ 19677183 (+)
trnak-cuu-73 NA coding upstream 121003 19676281 ~ 19676353 (+)
LOC118941120 LOC100136121 coding downstream 4946 19804510 ~ 19807971 (+)
LOC118941067 LOC106593417 coding downstream 12438 19812002 ~ 19813005 (+)
LOC118941119 LOC100136121 coding downstream 17085 19816649 ~ 19820106 (+)
LOC110495770 LOC100136121 coding downstream 33359 19832923 ~ 19836879 (+)
tlr22 tlr22 coding downstream 44772 19844336 ~ 19847844 (+)
G1523783 NA non-coding upstream 165841 19630938 ~ 19631515 (+)
G1523765 LOC106575406 non-coding upstream 197066 19596636 ~ 19600290 (+)
G1523763 LOC106574531 non-coding upstream 203465 19593341 ~ 19593891 (+)
G1523753 LOC106574529 non-coding upstream 220260 19574198 ~ 19577096 (+)
G1523735 LOC106574527 non-coding upstream 248578 19548396 ~ 19548778 (+)
G1523871 NA non-coding downstream 48635 19848199 ~ 19848838 (+)
G1523894 NA non-coding downstream 56162 19855726 ~ 19856055 (+)
G1523896 NA non-coding downstream 58542 19858106 ~ 19858708 (+)
LOC110495772 LOC106574540 non-coding downstream 109336 19908603 ~ 19954099 (+)
G1523959 NA non-coding downstream 183661 19983225 ~ 19983481 (+)
G1523703 LOC106575364 other upstream 290100 19506392 ~ 19507256 (+)
LOC110495755 LOC106574522 other upstream 353047 19436699 ~ 19444433 (+)
G1523614 NA other upstream 418884 19377067 ~ 19378472 (+)
otomp omp-1 other upstream 590122 19206164 ~ 19211574 (+)
LOC110495771 LOC106574539 other downstream 97496 19897030 ~ 19900020 (+)
LOC110495777 LOC106574545 other downstream 193276 19992559 ~ 20049054 (+)
LOC110495776 LOC106574545 other downstream 266690 20065965 ~ 20110618 (+)
LOC110495784 LOC106574551 other downstream 406928 20206484 ~ 20236753 (+)
G1524124 LOC106574554 other downstream 506141 20305705 ~ 20306904 (+)

Expression


Co-expression Network