LOC118941120 (LOC100136121)


Basic Information

Item Value
gene id LOC118941120
gene name LOC100136121
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19804510 ~ 19807971 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118941120
GATGTCAAGCTCCTCACAATGACACTCAAGATAACCATGCCAGGAGAACAAAGTGGTTCTACATTCTCTCAGCTGAGACTCTTTCTTTGTTTCCTGATGTATTGTTGGGTTCTTGCTGATCCAGTATGTGGGTACTTCCTGAAAAACTGCACAATCCGGGGTAATCTCAGTGACCCCTCTAACATGAAAGTACTCTGTGAAAAGAGGAACCTAGAAGTCGTACCAAAAGACATTCCACGGAAAGTAAGCGTTTTAAATGTGGCCATGAATAACATTTCCAAAATTGGAAAGTTGGATTTTAAAGGCCTATCAAATCTCAAAATTCTAAACATGTCAAGAAACCAGATCTCTTCAGTGGATGATGGGTCTCTCAGTCACCTAGAGGCTCTTCAGGAGCTGGGTCTGGCTCATAACAGACTCACAATCTTGTCAGACCATTTGTTTCAGGGCCTAGCCAACCTCTCCCTGCTACATCTGGACAACAACCTCATCACAACCATCAGCTCCTCATCATTTCAGCCTCTCTCCAGTTTGAAGACAGTGAATTTAACCAAGAACAACCTTCATAATATGAAGGAAGTTCAGCCCATCGTACAATTACCACACTTACAGGAGTTGTACATTGGGAGCAACAGATTCACCTCTTTCCAGTCACAGGAAATATCAAACACTTCTATAGAGCTGAGACTGTTGGATTTATCCCGGAATCCATTGGGAATCTTCAGGATCACGGCAGATGTTCTTCCTTACCTTGAGGTGTTAGACATCGCCTACTGTGGACAACTTGGACACATGGAATGGGATGTGCTGGACAGGTCTTTTCTGAGCAACGTCAAACGTCTGAACCTGAGCGGGATAGAGATGTCTTTGGAGAGGATGGGTATGGTGCTGCAGACTGTCAACTCCTCATTAGTCCATCTGAGACTGTATGACATTAGTGAAGAGAGGGTCAAGGCTCTCACTGATATTGCCTGCCATATACCCACACTTAGCTTGCTCCGACTGCATCATAACAACATAAGTGTTCTCTCTAAGGAATTTCTGCAGTCATGTAAACAGTTGACCGAAATGGACGTATGTGATAATAATATCAATCAGCTTTCTGAGCTTTTATTCAGATCAATGGAGCAATTAAGTACTTTGAAACTGGGCCACAACAGGCTTTCTTCCATGCCAAAGGCCACAAGAAATCTACCTACACTGAAGATCCTGGATCTGAGCTTCAATATCATCCATGAACTGGGCTGCCCTGACTTTGCCAATCTTACAGGACTCACACAACTCTTTCTTTTCCACAATCAAATCTCCAACCTTCCAGAATGTGTTTTCCAGGATTTGAAAGAATTAAGGATCCTTAAACTGGGATCAAACAAAATCCTGACCTTGAATGATGCATTCATGAGTGGTTTGCCCAAACTAGAATATTTGTCGATGTCATACAATAAGCTGAGCTCAATCTCTAAAGGAGACTTTAAAGGCTTAGCATCACTCAAGACCCTGCTTTTATTTGACAATCAGATTGCTAGTCTTGAAGATGGAGCCTTTGAGGGATTGGTGAATCTTACAGAACTTAGACTCCAGTCAAATAAGATCACTCAAACAGACATAAGAAATACTGTGCTCACGGGACTTCCACTCTTAAGAACTCTTGATATATCCTGTAATTACATCACATATGTAAATGATGATAAATTAgaccctccacccttctctcatcTGACATCTCTGGAGAACCTGCAGATCCATAGTCAGCGTCACAAGGGACTGTGTCATCTACCTATCAACTTCCTTGAAGGTTTGAAATCTTTATTGGCATTCAAGGCAGGGAATCTCAATATTAAGGACCTGCACCCAAACACATTTATTCACACACCACGGTTGTGGTACCTTGATGTCAGTAAGAATGAGTTCACAGCCCTCACGCCAAAGCTGTTTCACCCAACCCCAAGGCTCAACAGAATGTACCTGTCCAAAGCACGACTTCAGTCCTTAGATTTCCTCGTAGGAGCAAACCTCAGTAGAGTCACTTTCTTGCAGGTGAGCAAGAACGACATAACAGTAGTCAATGAGACAGTGTTCCGTTCTCTCCCTGCCTTGACATACCTGGACATGCAAGATAATCCTTTCACCTGTGGCTGCAGTGATGCTTGGTTTGTCCAGTGGATGGAGAGCGACAACCAAACACAAATTGTTGGTGCAGGAGAATTTACCTGCAACTATCCTGCCGATCTAAAGGACACCAAGCTGTTGGATGTTGAGCTTCAGTTCTGTATAGTACACTTAGGACTTTACTACTACATTTCTACCACTTGTCTGGTCCTCCTCACCCTGATAGCATCCTTTGCCTACCACTTCCTGAAATGGCAGGTAATTTACGGCTATTACCTCTTCCTGGCTTTCCTCTATGACACCAAGCAAAGGAATAAGCTCACGCCTCATGGCTGTCAGTACGATGCCTTCATCTCCTACAACGCCCACGATGAGCCCTGGGTCCTGAGGGAGCTTCTGCCAGAGCTGGAGGGAGAGCAGGGCTGGAAGCTGTGTCTCCACCACCGGGACTTCCAGCCAGGCAAACCCATCATAGACAACATTATGGACGGCATCTACGGAAGCCGCAAGACCATCTGTGTCATCAGCCACCGCTACCTGGAGAGTGAGTGGTGCTCCCGGGAGATCCAGGTTGCCAGCTTCCGGCTCTTTGATGAGCAGAAGGATGTCCTGATTCTGGTGTTCCTGGAGGAGATCCCTACCCACCAGCTGTCACCCTACCACCGGATGAGGAAGCTAGTGAAGAGACGCACATACCTGAGCTGGCCCAGAGCTGGGGAGCAAACCGGGGTCTTCTGGCAGCAACTACGGCTGGCTTTAGAGACCAAGGATGGCTCTGCTGAGGAAAATCCTATCCTCTCTGGGGTGCAGGCTCTGTGATAGTGAAACCTTGATTTGAAACAACCATTACACTCTGAACCTTTTCTGTATATTTACATGAGAATATTGAAGATGCACTCTCAAACTTTTGtctaatttcagccagtagttttgaaagtggtgctcacCAGCCAGAAGTGGTCCTTGTTTCCTGTGTAACACGTCATCTATAGTGTTTTAAACTCATTTGTATGATATGACATGTTACGAATCTAATTAATCATAATAGAATGTTATGATTTTGCTGTGTCCTGCATCCTGGAGTGCATCTTCAAGAAATCGTTAATAGTACTGACGCACCAAtgcatcaatctaagtaacataataaaaaaatcctggtctcagagcatttcgtattattctgtacatttATCTGAAAGACCACAttaagtatgatatgttatgttttgtaTGGTGTATATTAATGTATTAATgtaaaacgtacaatatgttacaaatttgcaaaacataATATACGTTATGAaatctagctaggtggctaggtggttaccattagctaggctaggggttaag

Function

NR:

description
Toll-like receptor II precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118941120 True 3462 mRNA 0.44 1 19804510 19807971

Neighbor

gene id symbol gene type direction distance location
LOC110497090 LOC106574537 coding upstream 4946 19797356 ~ 19799564 (+)
LOC110495769 LOC106575326 coding upstream 43268 19748427 ~ 19761242 (+)
LOC110495767 LOC106574534 coding upstream 59224 19694046 ~ 19745286 (+)
LOC110497087 LOC106574533 coding upstream 111018 19683836 ~ 19693492 (+)
trnan-guu-15 NA coding upstream 127327 19677110 ~ 19677183 (+)
LOC118941067 LOC106593417 coding downstream 4031 19812002 ~ 19813005 (+)
LOC118941119 LOC100136121 coding downstream 8678 19816649 ~ 19820106 (+)
LOC110495770 LOC100136121 coding downstream 24952 19832923 ~ 19836879 (+)
tlr22 tlr22 coding downstream 36365 19844336 ~ 19847844 (+)
LOC110495771 LOC106574539 coding downstream 89059 19897030 ~ 19900020 (+)
G1523783 NA non-coding upstream 172995 19630938 ~ 19631515 (+)
G1523765 LOC106575406 non-coding upstream 204220 19596636 ~ 19600290 (+)
G1523763 LOC106574531 non-coding upstream 210619 19593341 ~ 19593891 (+)
G1523753 LOC106574529 non-coding upstream 227414 19574198 ~ 19577096 (+)
G1523735 LOC106574527 non-coding upstream 255732 19548396 ~ 19548778 (+)
G1523871 NA non-coding downstream 40228 19848199 ~ 19848838 (+)
G1523894 NA non-coding downstream 47755 19855726 ~ 19856055 (+)
G1523896 NA non-coding downstream 50135 19858106 ~ 19858708 (+)
LOC110495772 LOC106574540 non-coding downstream 100929 19908603 ~ 19954099 (+)
G1523959 NA non-coding downstream 175254 19983225 ~ 19983481 (+)
G1523703 LOC106575364 other upstream 297254 19506392 ~ 19507256 (+)
LOC110495755 LOC106574522 other upstream 360201 19436699 ~ 19444433 (+)
G1523614 NA other upstream 426038 19377067 ~ 19378472 (+)
otomp omp-1 other upstream 597276 19206164 ~ 19211574 (+)
LOC110495777 LOC106574545 other downstream 184869 19992559 ~ 20049054 (+)
LOC110495776 LOC106574545 other downstream 258283 20065965 ~ 20110618 (+)
LOC110495784 LOC106574551 other downstream 398521 20206484 ~ 20236753 (+)
G1524124 LOC106574554 other downstream 497734 20305705 ~ 20306904 (+)

Expression


Co-expression Network