LOC118941119 (LOC100136121)


Basic Information

Item Value
gene id LOC118941119
gene name LOC100136121
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19816649 ~ 19820106 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118941119
GTCAAGCTCCTCAAAATGACACTCAAGATAACCATGCCTGGAGAACAAAGTGGTTCTACATTCTCTCAGCTGAGACTCTTTCTTTGTTTCCTGATGTATTGTTGGGTTCTTGCTGATCCAGTATGTGGGTACTTCCTGAAAAACTGCACAATCCGGGGTAATCTCAGTGACCCCTCTAACATGAAAGTACTCTGTGAAAAGAGGAACCTAGAAGTTGTACCAAAAGACATTCCACGGAAAGTAAGCGTTTTAGATGTGGCCATGAATAACATTTCCAAAATTGGAAAGTTGGATTTTAAAGGCCTATCAAACCTCAAAATTCTAAACATGTCAAGAAACCAGATCTCTCAATTGGACAATGGGTCTCTCAGACACCTAGAGGCTCTTCAGGAGCTGGGTCTGGCTCATAACAGACTCACAACCTTGTCAGACCATTTGTTTCAGGGCCTAGCCAACCTCTCCCTGCTACATCTGGACAACAACCTCATTGCAACCATCAGCTCCTCATCATTTCAGCCTCTCTCCAGTTTGAAGACAGTGAATTTAACCAAGAACATCCTTTATAATATGAAGGAAGTTCAGCCCATCGTACAATTACCACACTTACAGGAGTTGTACATTGGGAGCAACAGATTCACCTCTTTCCAGTCACAGGAAATATCAAACACTTCTATAGAGCTGAGGCTGTTGGATTTATCCCGGAATCCATTGGGAATCTTCAGGATCACGGCAGATGTTCTTCCTTACCTTGAGGTGTTAGACATCGCCTACTGTGGCCAACTTGGACGCATGGAATGGGATGTGCTGAACAGGTATTTTCTGAGCAACGTCAAACGTCTCAACTTGAGTGGCATTGAGATGTCTTTCGAGAGGATGGGTATGGTACTGCAGACTGTCAACTCCTCATTAGTCCATCTGAGATTGAATGACCTTGTCAAAGGCTCAAGGCTCAAGGTCAAGGCTCTCACTGATATTGCCTGCCATATACCTAAACTCAGCGTGCTCCGACTCGAATATAACAACATAGGTAATCTCTCTGAGGAATTTCTCCAGTCATGTAAACACATGACAGAAGTGGACATATCAAATACTGGTCTTACTCAGCTGTCTGAATTTTCATTCAGATCAATAGAGCAAATAAGTGCTTTGAAACTGGGCCACAACAGGCTTTCTTCCGTACCAAAGGCCACAAGAAATCTACCTACACTGAAGATCCTGGATCTCAGCTTCAATATCATCAATAAACTAGGCTGCTCAGATTTCTCCAATCTTACAGGACTCACACAACTCTTTCTTTTCCATAATCAAATCCCCAACCTTCCAGGATGTGTTTTCCAGGATATGAAAGAATTAAGGATCCTTAAACTGGGATCAAACAAAATCCTGACCTTGAATGATGCCTTCATGAATGGTTTGCAAAAACTTGAGACTTTGAATTTGGCAGGCAATAaactgagctctatcagaaaaGGAGAGTTTAAAAGCTTAACATCACTCAAGACTTTACTTTTATATGACAATCAGATTGCCAGTATGGAAGATGGAGCCTTTGAGGGATTGGTCAACCTTACAGAACTTAACCTGGGCTCAAATAAGATCACTCAAATAGACATAAGAAACACTGTGCTCATGGGGCTTCCAAGCTTAAGATCTCTTGATATATCCTGTAATTACATCACATATGTAAATGATGGTAAATTAgaccctccacccttctctcatcTGACATCTCTGGAGAACCTGCAGATCCATAGTCAGCGTCACAAGGGACTGTGTCATCTACCTATCAACTTCCTTGAAGGTCTGAAATCTTTATTGGCATTCAAGGCAGGGAATCTCAATATTAAGGACCTGCACCCAAACACATTTATTCACACACCACGGTTGTGGTTCCTTGATGTCAGTAAGAATGAGTTCACAGCCCTCACTCCAAAGCTGTTTCAACCAACCCCAAGGCTCAACAGAATGTACCTGTCCAAAGCCCAACTTCAGTCCTTAGATTTCCTCATAGGAGCAAACCTCAGTAGAGTCACTTTCTTGCAGGTGAGCAAGAACGACATAACAGTAGTCAATGAGACAGTGTTGCAATCTCTCCCTGCCTTGACATACCTGGACATGCAAGATAATCCTTTCACCTGTGGCTGCAGTGATGCTTGGTTTGTCCAGTGGATGGAGAGCGACAACCAAACACAAGTTGTTGGTGCAGGAGAATTTACCTGCAACTATCCTGCCGATCTAAAGGACACCAAGCTGTTGGATGTTGAGCTTCAGTTCTGTACAGTGGACTTAGGACTTTACTGCTACATCTCTACCACTTGTCTGGTCCTCCTCACCCTGGTAGCATCTTTTGCCTACCACTTCCTGAAATGGCAGGTCATTTACGGCTATTACCTCTTCCTGGCTTTCCTCTATGACACCAAGCAAAGGAATAAACGCTTGTCTCATGGCTGTCAGTACGATGCCTTCATTTCCTACAACGCCCACGATGAGCCCTGGGTCCTGAGGGAGCTTCTGCCAGAGCTGGAGGGAGAACAGGGCTGGAAGCTGTGTCTCCACCACCGGGACTTCCAGCCAGGCAAACCCATCATAGACAACATTATGGACGGCATCTACGGAAGCCGCAAGACCATCTGTGTCATCAGCCACCGCTACCTGGAGAGTGAGTGGTGCTCCCGGGAGATCCAGGTTGCCAGCTTCCGGCTCTTTGATGAGCAGAAGGACGTCCTGATTCTGGTGTTCCTGGAGGAGATCCCTACCCACCAGCTGTCACCCTACCACCGGATGAGGAAGCTAGTGAAGAGACGCTCATACCTGAGCTGGCCCAGAGCTGGGGAGCAAACCGGGGTCTTCTGGCAGCAACTACGGTTGGCTTTAGAGAGCAAGGATGGCTCTGCTGAGGAAAATCCCATCCTCTCTGGGGTGGAGGCTCTGTGATAGTGAAACCTTGATTTGAAACAACCATCACGCTCTGAACCTTTTCTGTATATTTACATGAGAATATTGAAGATGCACTCTCAAACTTTTGtctaatttcagccagtagttttgaaagtggtgctcacGAGCCAGAAGTGGTCCTCGTTTTCTGTGTAACACGTCATCTATAGTGTTTTAAACTCATTTGTATGATATGACATGTTACGAATCTAATGAATCATAATAGTATGTTATGATTTTGCTGTGCCCTGCATCCTGGAGTGCATCTTAAGAAATCGTTAATAGTACTGACGCACCAATGCATCAATCTAAGTaatataataaaaaaatcctggtctcagagcatttcgtattattctgtacatttATCTGAAAGACCACATTAAGTATGACATGTTATGTTTTGTATGGTATATATTAAGGTATTAACCTCtaatgactccccatcccgcatgagggagcgtaatcatcgcctgacactaattagcataacgcaacggacataaatattcctagaaaat

Function

NR:

description
toll-like receptor 13

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118941119 True 3458 mRNA 0.44 1 19816649 19820106

Neighbor

gene id symbol gene type direction distance location
LOC118941067 LOC106593417 coding upstream 3644 19812002 ~ 19813005 (+)
LOC118941120 LOC100136121 coding upstream 8678 19804510 ~ 19807971 (+)
LOC110497090 LOC106574537 coding upstream 17085 19797356 ~ 19799564 (+)
LOC110495769 LOC106575326 coding upstream 55407 19748427 ~ 19761242 (+)
LOC110495767 LOC106574534 coding upstream 71363 19694046 ~ 19745286 (+)
LOC110495770 LOC100136121 coding downstream 12817 19832923 ~ 19836879 (+)
tlr22 tlr22 coding downstream 24230 19844336 ~ 19847844 (+)
LOC110495771 LOC106574539 coding downstream 76924 19897030 ~ 19900020 (+)
LOC110495772 LOC106574540 coding downstream 88497 19908603 ~ 19954099 (+)
poglut1 poglut1 coding downstream 149402 19969508 ~ 19975011 (+)
G1523783 NA non-coding upstream 185134 19630938 ~ 19631515 (+)
G1523765 LOC106575406 non-coding upstream 216359 19596636 ~ 19600290 (+)
G1523763 LOC106574531 non-coding upstream 222758 19593341 ~ 19593891 (+)
G1523753 LOC106574529 non-coding upstream 239553 19574198 ~ 19577096 (+)
G1523735 LOC106574527 non-coding upstream 267871 19548396 ~ 19548778 (+)
G1523871 NA non-coding downstream 28093 19848199 ~ 19848838 (+)
G1523894 NA non-coding downstream 35620 19855726 ~ 19856055 (+)
G1523896 NA non-coding downstream 38000 19858106 ~ 19858708 (+)
G1523959 NA non-coding downstream 163119 19983225 ~ 19983481 (+)
G1523703 LOC106575364 other upstream 309393 19506392 ~ 19507256 (+)
LOC110495755 LOC106574522 other upstream 372340 19436699 ~ 19444433 (+)
G1523614 NA other upstream 438177 19377067 ~ 19378472 (+)
otomp omp-1 other upstream 609415 19206164 ~ 19211574 (+)
LOC110495777 LOC106574545 other downstream 172734 19992559 ~ 20049054 (+)
LOC110495776 LOC106574545 other downstream 246148 20065965 ~ 20110618 (+)
LOC110495784 LOC106574551 other downstream 386386 20206484 ~ 20236753 (+)
G1524124 LOC106574554 other downstream 485599 20305705 ~ 20306904 (+)

Expression


Co-expression Network