LOC110495770 (LOC100136121)


Basic Information

Item Value
gene id LOC110495770
gene name LOC100136121
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19832923 ~ 19836879 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110495770
TGACCATGCCAGGAAAACAAAGTGGGTCTACATTCTCTCAGCTGAGACTCGATCTTTGTTTCCTGATGTATTGCTGGGTTCTTGCTGATCCAGTATGTGGGTACTTCCTGAAAAACTGCACAATCCGGGGTAATCTCAGTGACCCCTCTAACATGAAAGTACTCTGTTATAACAGGAATCTTGAAGTCATACCTTTAGATATTCCGCGGAAAGTAAGCAATTTAGACTTGGCCATGAATAAGATTTCCAAGATCGAAAAGTTGGATTTTACAGACCTATCAAACCTCAAAATTCTAAACATGTCCAAAAACCAGATCTCTCAAGTGGATGATGAGGCTCTTGGACACCTAGATGCTCTTCAGGAGCTGGGTCTGTCTCATAACAGACTCACAACCCTGTCAGACCATTTGTTTCAGGGCCTGGCCAACCTCTCCCTGCTACATCTGGACAACAACCTCATTGCAACCATCAGCTCCTCATCATTTCAGCCTCTCTCCAGTTTGAAGACAGTGAATTTAACCAAGAACAACCTTTATAATATGAAGGAAGTTCAGGCCATTGTACAATTACCACACTTACAGGAGTTGTACATTGGGAGCAACATATTCACATCTTTCCAGTCACAGGAAATATCAAACACTTCTTTAAAGCTGAGAGTGTTGGATTTATCCTGGAATCCATTGGAAATCTTCAGAGTCACGGCAGATGTTTTTCCTTACCTTGAGGTGTTAGACATCGCCTACTGTGGCCAACTTGGACGCATGGAATGGGATGTGCTGAACAGGTCTTTTCTGAGCAACGTCAAACGTCTCAACTTGAGTGGCATTGAGATGTCTTTCGAGAGGATGGGTATGGTACTGCAGACTGTCAACTCCTCATTAGTCCATCTGAGATTGCAAGACCTTGTAAACGGCTCAAGGCTAAAGGTCAAGGCTCTCACTGATATTGCCTGCCATATACCTACACTCAATGTGCTAAGACTAGAATATAACAACATAGGTAATCTCTCTGAGGAATTTGTGCAGTCATGTAAGCACATGATAGAAGTGGACATATCAAATACTAATCTTTTTCAGCTGTCTGACTTTTCATTCAGACCGTTAGAGCAGATAAGGACTTTGAAAATGGGCCACAACAGGCTTTCTTCCGTGCCAAAGGCCACAAGAGATGTACCTACACTGAAGGTCTTGGATCTCAGCTTCAATATCATCAATAAACTGGGCTGCTCAGATTTCTCCAATCTTACAGGACTCACACAACTCATTATTTTCCACAATCAAATCTCCAACCTTCCAGGATGTGTTTTCCAGGATTTGAAAGAATTAAGGATCCTTAAACTGGGATCAAACAAAATCCTGACCTTGAATGAAGCCTTCATGAATGGTTTGCACAAACTTGAGACTTTGTTGATGGCAGGCAATAAACTGAGCTCTATAAGAAAAGGAGAGTTTAAAAGCTTAGTATCACTCaagaatttgtttttatttgACAATCAGATTGCCAGTATGGAAGATGGAGCCTTTGAGGGATTGGTCAACCTTACAGAACTTCAACTGGACTCAAATAAGATCACTCAAACAGACATAAGAAATACTGTGCTCACGGGACTTCCACTCTTAAGAACTCTTGATATATCCTGTAATTACATCACATATGTAAATGATGATAAATTAgaccctccacccttctctcatcTGATATCTCTGGAGAACCTCAGGATATTTAGTCAGCGTCACAAGGGACTGTCTCATCTACCTATCAACTTTCTTGAAGGACTGAAATCTTTATTGTCATTCCAGGCAGGGAGTCTCAATATTAAGGACCTGCACCCAAATACATTTATTCACACACCCCGGTTGTGGTTCCTTGATGTCAGTAAGAATGAGTTCACAGCCCTCACTCCAAAGCTGTTTCACCCAACCCCAAGGCTCAACAGCCTGTACCTGTCCAAAGCCCGACTTCAGTCCTTAGATTTCCTCATAGGAGCAAACCTCAGTAGAGTCACTTTCTTGCAGGTGAGCAAGAATGACATAACAGTAGTCAATGAGACAGTGTTGCAGTCTCTCCCTGCCTTGACATACCTGGACATGCAAGATAATGCTTTCACCTGTGGCTGCAGTGATGCTTGGTTTGTCCAGTGGATGGAGAGCAACAACCAAACACAAGTTGTTGGTGCAGGAGAATTTACCTGCAACTATCCTGCCGATCTAAAGGACACCAAGCTGTTGGATGTTGAGCTTCAGTTCTGTAGAGTGGACTTAGGACTTTACTGCTACATCTCTACCACTTGTCTGGTCCTCCTCACCCTGGTAGCATCCTTTGCCTACCACTTCCTGAAATGGCAGGTCATTTACGGCTATTACCTCTTCCTGGCTTTCCTCTATGACACTAAGCAAAGGAAAAAGCACACGCCTCATGGCTGTCAGTACGATGCCTTCATTTCCTACAATGCCCACGATGAGCCCTGGGTCCTGAGGGAGCTTCTGCCAGAGCTGGAGGGACAGCAGGGCTGGAAGCTGTGTCTCCACCACCGGGACTTCCAGCCAGGCAAACCCATCATAGACAACATTATGGACGGCATCTACGGAAGCCGCAAGACCATCTGTGTCATCAGCCACCGCTACCTGGAGAGTGAGTGGTGCTCCCGGGAGATCCAGGTGGCCAGCTTCCGGCTCTTTGATGAGCAGAAGGACGTCCTGATTCTGGTGTTCCTAGAGGAGATCCCTACCCACCAGCTGTCACCCTACCACCGGATGAGGAAGCTAGTGAAGAGACGCACGTACTTGAGCTGGCCCAGGAATGGGGAGCACATTGTGCTCTTCTGGCAGCAACTACGGCTGGCTTTAGAGACCAAGGACGGCCCTGCTGAGGAAAATCCCATCCTCTCTGGTGTGCAGGCTCTGTGATAGTGACACGTTGATAGTGACACCTCACTCTGAACCTTTTCTGTATATTTACATGAGAATATTGAAGATGCACTCTCACACTTTTGtctaatttcagccagtagttttgaaagtggtgctcacGAGCCAGAAGTGGTCCCAGTTTTCTGTGTATCACGTCACCTAAAGTGTTTTTTGCCTATTAGTATTATATGTCATGAATTAATTTCatactatacagtatgttatgatTTTATTGTGCTTATCATCATGGAGTGCATCTTTAAGAAGTTCCTAAGAGTATTGATGTGCCCATgggtcaatctaagtaacatatgaaaaaaatccccatcaaagttagtttaagctagagatatcagtttcTTTGCATGGGTCTCAGAGCAATTTATATTATTCTGTACATTTATCTTCAAGGCCAAATGTAGTTTGATATGTTATGTTTTTTATGGTATTTTTTATGGTATTAATGCAAAACTTAGCTAATAAGCTAAGTAGTTACAAAGCAGCAAAAAGTTAGTAAGTAGTTGAACAGTTCCTCACTAGccaaaatgctaaagttgtccgtgatgagattcgatCTCGCAACCATATGCCCACCCATCTGTCATATGCAACTATGCCAAAACTAACATACCATACTAAATGGACTGTTTCGGATTTTcagtgcatttagaaagtaatcagaccacttgacttttcccacatttcgttacgttacagccttattctaaaatgtattaaattactaaaaaatcATCATACATCTACACACTATactccatgatgacaaagcaaaatgtgtttttttttacattgtagctagtttaataaaatgtttcaacagaaataccttttacataagtattcagaccctttgctatgagactcgaaattgagctcaggtgcatcctgtttcaattgattcttgagatgtttctacaacttaactGGAGTCTATATGTGGTAAactgaattgattggacatgattaaaaaagcacacacctgtctacataaggtccgacagttgacagtgcatgtcagcgcaaaaac

Function

NR:

description
toll-like receptor 13

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110495770 True 3957 mRNA 0.42 1 19832923 19836879

Neighbor

gene id symbol gene type direction distance location
LOC118941119 LOC100136121 coding upstream 12817 19816649 ~ 19820106 (+)
LOC118941067 LOC106593417 coding upstream 19918 19812002 ~ 19813005 (+)
LOC118941120 LOC100136121 coding upstream 24952 19804510 ~ 19807971 (+)
LOC110497090 LOC106574537 coding upstream 33359 19797356 ~ 19799564 (+)
LOC110495769 LOC106575326 coding upstream 71681 19748427 ~ 19761242 (+)
tlr22 tlr22 coding downstream 7457 19844336 ~ 19847844 (+)
LOC110495771 LOC106574539 coding downstream 60151 19897030 ~ 19900020 (+)
LOC110495772 LOC106574540 coding downstream 71724 19908603 ~ 19954099 (+)
poglut1 poglut1 coding downstream 132629 19969508 ~ 19975011 (+)
timmdc1 cc001 coding downstream 138135 19975014 ~ 19982950 (+)
G1523783 NA non-coding upstream 201408 19630938 ~ 19631515 (+)
G1523765 LOC106575406 non-coding upstream 232633 19596636 ~ 19600290 (+)
G1523763 LOC106574531 non-coding upstream 239032 19593341 ~ 19593891 (+)
G1523753 LOC106574529 non-coding upstream 255827 19574198 ~ 19577096 (+)
G1523735 LOC106574527 non-coding upstream 284145 19548396 ~ 19548778 (+)
G1523871 NA non-coding downstream 11320 19848199 ~ 19848838 (+)
G1523894 NA non-coding downstream 18847 19855726 ~ 19856055 (+)
G1523896 NA non-coding downstream 21227 19858106 ~ 19858708 (+)
G1523959 NA non-coding downstream 146346 19983225 ~ 19983481 (+)
G1523847 NA other upstream 4957 19775092 ~ 19827966 (+)
G1523703 LOC106575364 other upstream 325667 19506392 ~ 19507256 (+)
LOC110495755 LOC106574522 other upstream 388614 19436699 ~ 19444433 (+)
G1523614 NA other upstream 454451 19377067 ~ 19378472 (+)
LOC110495777 LOC106574545 other downstream 155961 19992559 ~ 20049054 (+)
LOC110495776 LOC106574545 other downstream 229375 20065965 ~ 20110618 (+)
LOC110495784 LOC106574551 other downstream 369613 20206484 ~ 20236753 (+)
G1524124 LOC106574554 other downstream 468826 20305705 ~ 20306904 (+)

Expression


Co-expression Network