tlr22 (tlr22)


Basic Information

Item Value
gene id tlr22
gene name tlr22
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19844336 ~ 19847844 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124412.1
AGTCTGTTTCGTTTTCACTTGTGTTGTAGCTGTTTGTGAGAAATCAATCTAGACAAATACCAAGATACATTTTGAACAAAGTTTAGTGAAGTAAAATGCCAGGGAAGTGCTCTTTGGAGCAGGGTGGTAGAACCGGGACTCAGGTGATTACAGTCCTATGCTGCACTAGTGCTCACTGTGACTGTCTTCCTCTGACAATTATCTGAAGTAGATGTCAAGCTCCTCACAATGACACTCAAGATAACCATGCCAGGAGAACGAAGTGGGTCTACATTCTCTCAGCTGAGACTCTGTCTTTGTTTCCTGATGTATTGCTGGGTTCTTGCTGATCCAGTATGTGGGTACTTCCTGAAAAACTGCACAATCCGGGGTAATCTCAGTGACAACTTTAACATGAAAGTACTCTGTTATAACAGGAATATTGAAGTCATGCCTATAAATATTCCTTGTAAAGTAAGTGTTTTAGATGTGGCCATGAATAATATTTCCAAAATCAGAAGGTTGGATTTTAAAGGACTGTCAAACCTCAAAATTCTAAACATGTCCAGAAACCAGATCTCTCAAGTGGACAATGACGCTCTTTTACCCCTAAAGGCGCTTCGAGAGTTGAATCTGGCTCATAACAGACTCACAACCCTGTCAGACCATTTGTTTCAGGGCCTAGACAACCTCTCCCTGCTACATCTGGACAACAACCTCATTGCAACCATCAGCTCCTCATCATTTCAGCCTCTCTCCAGTTTGAAGACAGTGAATTTAACCAAGAACAACCTTCATAATATGAAGGAAGTTCAGCCCATCGTACAATTACCACACTTACAGGAGTTGTACATTGGGAGCAACAGGTTCACCTCTTTCCAATCACAAGAAATATCAAACATGTCTATAGAGCTGAGGCTGTTGGATTTATCCCGGAATCCATTGGGAGTCTTCAGGATCACGACAGATGTTCTTCCTTACCTTGAGGTGTTAGACATCGCCTACTGTGGCCAACTTGGACACATGGAATGGGATGTCCTGGACAGGTCTTTTCTGAGAAACGTCAAAAGTCTCAACCTGAGCGGGATTGAGATGTCTTTGGAGAGGATGGGTATGGTGCTGCAGACAGTCAACTCCTCATTAGTCCATCTGAGACTGTATGACATTAGTGAAGAGAGGGTCAAGGCTCTCATTGATTTTGCCTGCAATATACCCACACTTAGCTTGCTCCGACTGCATCATAACAACATAAGTGCTTTGTCTGAGGAATTTCTGCAGTCATGTAAACAAGTCACCGAAGTGGACttagaaaataataatattattcaGCTGTCAGAGGTATCATTCAGATCAATGGAGCAACTAAGTACCTTGAGACTGGGCCACAACAGGCTTTCTTCCGTACCAGATGCCACAAGAAATATATCCACACTAATGCTCCTGGATCTCAGCTTCAATATCATCCATAAACTGGGCTGCTCAGATTTCTCCAATCTTACAGGACTCACACAACTCTTTCTTTTCCACAATCAAATCTCCAACCTACCAGGATGTGTATTCCAGGATTTGAAAGACTTAAGGATCCTTAAACTGGGATCAAACAAAATCCTGACCTTGAATGATGACTTCATGAGTGGTTTGCACAAACTAGAATTTTTGTCGATGTCATACAATAAGCTGAGCTCAATCTCTAAAGGAGACTTTAAAGGCTTAGCATCACTCAAGACCCTGCTTTTATTTGACAATCAGATTGCTAGTCTTGAAGATGGAGCCTTTGAGGGATTGGTGAATCTTACAGAACTTAGACTCCAGTCAAATAAGATCACTCAAATAGACATAAGAAATACTGTGCTCATGGGACTTCCACACTTAAGAACTCTTGATATATCCTGTAATTACATCACATATGTAAATGATGATAAATTagaccctccacccctctctcatcTGACATCTCTGGAGAACCTTTTGATATTTAGTCAGCGTCACAAGGGACTGTGTCATCTACCAATCAACTTTCTTGAAGGTCTGACATCTTTATTGTCATTCCAGGCAGGGAGTCTTAACATTAAGGACCTGCACCCAGACACATTCATTCACACACCCCAGTTGTGGTTCCTTGATATGAGTAAGAATGAGTTCACAGCCCTCACTCCAAAGCTGTTTCACCCAACCCCAAGTCTCAACAGACTTTATCTGCCCAAAGCCCGACTTCAGTCCTTAGATTTCCTAAAAGGAGCAAACCTCAGTAGAGTCACTTTCTTGCAGGTGAGAAAGAATGACATAACAGCAGTCAATGAGACAGTGTTGCAATCTCTCCCTGCCTTGACATACCTGGACATGCAAGATAATCCTTTCACCTGTGGCTGCAGCGATGCTTGGTTTGTCCAGTGGATGGAGAGCAACAACCAAACACAAGTTGTTGGTGCAGGAGAATTTACCTGCAACTATCCTGTCGATCTAAAGGACACTAAGTTGTTGGATGTTGAGCTTCAGTTCTGTACAGTGGACTTAGGACTTTACTACTACATCTCTACCACTTGTCTGGTCCTCCTCACCCTGATAGCATCCTTTGCCTACCACTTCCTGAAATGGGAGGTAATTTACGGCTATTACCTCTTCCTGGCTTTCCTCTATGACACCAAGCAAAGGAATAAGCACAAGCCTCATGGCTGTCAGTACGATGCCTTCATTTCCTACAACGCCCACGATGAGCCCTGGGTCCTGAGGGAGCTTCTGCCAGAGCTGGAGGGAGAACAGGGTTGGAAGCTGTGTCTCCACCACCGGGACTTCCAGCCAGGCAAACCAATCATAGACAACATTATGGACGGCATCTACGGAAGCCGCAAGACCATCTGTGTCATCAGCCACCGCTACCTGGAGAGTGAGTGGTGCTCCCGGGAGATCCAGGTGGCCAGCTTCCGGCTCTTTGATGAGCAGAAGGACGTCCTGATTCTGGTGTTCCTGGAGGAGATCCCTACCCACCAGCTGTCACCCTACCACCGGATGAGGAAGCTAGTGAAGAAACGCACATACCTGAGCTGGCCCAGAGTTGGGGAGCACACCGCGGTCTTCTGGCAGCAACTACGGCTGGCTTTAGAGACCAAGGATggccctgctgaagaaaatcccATCCTCTCTGGG

Function

symbol description
tlr22 Predicted to enable transmembrane signaling receptor activity. Acts upstream of or within pattern recognition receptor signaling pathway and response to bacterium. Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane. Is expressed in gonad; integument; kidney; muscle; and spleen.

NR:

description
toll-like receptor 22 precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124412.1 True 3123 mRNA 0.45 2 19844336 19847844

Neighbor

gene id symbol gene type direction distance location
LOC110495770 LOC100136121 coding upstream 7457 19832923 ~ 19836879 (+)
LOC118941119 LOC100136121 coding upstream 24230 19816649 ~ 19820106 (+)
LOC118941067 LOC106593417 coding upstream 31331 19812002 ~ 19813005 (+)
LOC118941120 LOC100136121 coding upstream 36365 19804510 ~ 19807971 (+)
LOC110497090 LOC106574537 coding upstream 44772 19797356 ~ 19799564 (+)
LOC110495771 LOC106574539 coding downstream 49186 19897030 ~ 19900020 (+)
LOC110495772 LOC106574540 coding downstream 60759 19908603 ~ 19954099 (+)
poglut1 poglut1 coding downstream 121664 19969508 ~ 19975011 (+)
timmdc1 cc001 coding downstream 127170 19975014 ~ 19982950 (+)
LOC110495777 LOC106574545 coding downstream 144715 19992559 ~ 20049054 (+)
G1523783 NA non-coding upstream 212821 19630938 ~ 19631515 (+)
G1523765 LOC106575406 non-coding upstream 244046 19596636 ~ 19600290 (+)
G1523763 LOC106574531 non-coding upstream 250445 19593341 ~ 19593891 (+)
G1523753 LOC106574529 non-coding upstream 267240 19574198 ~ 19577096 (+)
G1523735 LOC106574527 non-coding upstream 295558 19548396 ~ 19548778 (+)
G1523871 NA non-coding downstream 355 19848199 ~ 19848838 (+)
G1523894 NA non-coding downstream 7882 19855726 ~ 19856055 (+)
G1523896 NA non-coding downstream 10262 19858106 ~ 19858708 (+)
G1523959 NA non-coding downstream 135381 19983225 ~ 19983481 (+)
G1523847 NA other upstream 16370 19775092 ~ 19827966 (+)
LOC110495769 LOC106575326 other upstream 83316 19748427 ~ 19761242 (+)
G1523703 LOC106575364 other upstream 337080 19506392 ~ 19507256 (+)
LOC110495755 LOC106574522 other upstream 400027 19436699 ~ 19444433 (+)
G1523614 NA other upstream 465864 19377067 ~ 19378472 (+)
LOC110495776 LOC106574545 other downstream 218410 20065965 ~ 20110618 (+)
LOC110495784 LOC106574551 other downstream 358648 20206484 ~ 20236753 (+)
G1524124 LOC106574554 other downstream 457861 20305705 ~ 20306904 (+)

Expression


Co-expression Network