LOC110495771 (LOC106574539)


Basic Information

Item Value
gene id LOC110495771
gene name LOC106574539
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19897030 ~ 19900020 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571189.2
CCCTCCGTTTCTCAAGTAAGCCTTTATTAGTTGGGATCGTTTGGATCTTATCTCTCATATAAGCCGCGTGCTGGACCCGAGAACGTTCGGAAAACACAGAAGTGGAAAGGAAGGGATTATCTTTCGGCTTTTCAATGCACTGACTGTTGGCACACGGTGCACAAGGGCCTTTCTTATCACGGTCATCTCCATCAAGAAGAACGGACAAATATCTGCACTTTCAGCGAGATCTTATCGACACAACAATCTATTGTTTCCAGCTGGGTGTTCACAAGGCACAAGATTTTTATCTTCAGAAATATTTACCACATAATCGTTAACTATACTATCAACTATACCATCATCTTCCCAACGAAGTGATATACCACAACTTGAAATTAGATGGTTCTGAGATAAACAACATTTTATGTTTGATTCGACTGTTAAAAATCTCAAAAAGTAAAAAGCAATTAATTGCATAAGGCTGTCAACAGTAGGCTATAATTCCTGTCATGAATTGGACTAAATAAGATGGTTTGTGAAAAaaaacaaagggaagcacagagtTAATTTGGAGTTGGAGTTTACTCCAACAGCTATCAAGAATCATCAGACAGTTGTGTCTCTCAACTGTTTGTCAAGctcttttTGGATACGAACTGAAAAACATATGAAAAGACTGAAAATGATGCTGAGTCCAGACCAAGCTGATTCCGACCTCGGATGGGGACAATCCGACGCAGAGTCGGTGCTCAACGACCTCAAGGTCGGGTGCCTGTCCGACGAACcgatggagggggaggggaagacgAGGTCGCTGGCCCAACCGACCCTCagcagggaggagaagagacggAGGAGACGTGCGACGGCCAAGTACCGCTCGGCCCACGCCACGCGCGAGAGGATCCGCGTGGAAGCGTTCAATGTGGCCTTCGCTGAACTGAGAAAGTTGCTGCCAACCCTTCCCCCTGACAAGAAACTCTCCAAGATCGAGATCCTCAGACTTGCAATATGCTATATCTCCTATCTCAATCACGTTCTGGATGTCTAGTTGAAATTAGTGAGTTACATTTTCAAATGGGAGAATTGGACAAGGAGAATGGAGGGACCAGAAAGAAATATGGGTGACATGTCACTTATGAAATCGGGGATACATGAAAGTTGCCAGAAAGTACaaaaaaagagaggggaggaagggggggggggggggggggggagtctgcagcctacagcctacttaTCCATGATTTTGAAGAAAATGCCTGTTTGATATTGCGTTTTGGTGAGGCTGGGTAACCCAGATGAACGAAAGGATGGATGTAAACGGAATGATATAGCTGCTTTATAGACATAGCATAGTTGATGTTTCCATAAAGGAGAACAAGTTCAAATGCATTAATGCATTAGTGCCACTTATGACGCGTACAATTGTGACCTTCATCATTGTTATTTAAGTTTAtggaattatttatttaaatgtgttaatattGAAGGTTCTCTTATTTATGTTTATAATAGACAAACGTATTTTATATACATGTCCATTGTTTGTATCATTGTATACATGTATATTTTAGGCTGTGATGATGAACTTCGAAAATGATGTTGTTGCTCTTCAAATGGCACTTTCTGTTTTTGTATTATacggtttttattttattgaattaGTACGTTAAGTGTAATATACTTTTATTCATGTCATGTCTATTGTCTATCAGGCAACGATAAGCACTTAATCATGTTGGGTTAAGTAAACTCATAAAACGTCAAACTTCGTTTAGTTCCCTTAAGTGTAAAGGGGAAGGAAGTTAATCAAAACTGAACAATACACCGAAAACGAATTAGCCTACTAaagaaaaacatccacacaatTTGAATTCGACTAACCGGATATAAAAAGCAAAAATCTAATTGAATGACATCGTTTGTGTTGATATCACTTTACAATTCAGAGGCAAACCTCTTTTGCTGTGACCAAAAAATCATTTCAAAATATTCTGATTTctattaaatgtttttatttcctTAAAAGCTAGAGGtgtttatttatatatctgtCTCTGCTTTGTATCTCAAAAAACATAATAAGTAATTTTATAGCGAAGAAAAACATATCTTCTATCCAAAGATTTTTTGTCTCTTCAGGGTTGTGTACTTGTTGCTTTATGCAGATATTTTGTAGTAGAGTTATTGTGACAGCTGGTTTTTAAGGAAcgcattttttatattttccggTGGTGTTTTTTGATTAAAAAAGGGAAAGAAATA
>TU1744915
TTGGGATCGTTTGGATCTTATCTCTCATATAAGCCGCGTGCTGGACCCGAGAACGTTCGGAAAACACAGAAGTGGAAAGGAAGGGATTATCTTTCGGCTTTTCAATGCACTGACTGTTGGCACACGGTGCACAAGGGCCTTTCTTATCACGGTCATCTCCATCAAGAAGAACGGACAAATATCTGCACTTTCAGCGAGATCTTATCGACACAACAATCTATTGTTTCCAGCTGGGTGTTCACAAGGCACAAGATTTTTATCTTCAGAAATATTTACCACATAATCGTTAACTATACTATCAACTATACCATCATCTTCCCAACGAAGTGATATACCACAACTTGAAATTAGATGGTTCTGAGATAAACAACATTTTATGTTTGATTCGACTGTTAAAAATCTCAAAAAGTAAAAAGCAATTAATTGCATAAGGCTGTCAACAGTAGGCTATAATTCCTGTCATGAATTGGACTAAATAAGATGGTTTGTGAAAAaaaacaaagggaagcacagagtTAATTTGGAGTTGGAGTTTACTCCAACAGCTATCAAGAATCATCAGACAGTTGTGTCTCTCAACTGTTTGTCAAGctcttttTGGATACGAACTGAAAAACATATGAAAAGACTGAAAATGATGCTGAGTCCAGACCAAGCTGATTCCGACCTCGGATGGGGACAATCCGACGCAGAGTCGGTGCTCAACGACCTCAAGGTCGGGTGCCTGTCCGACGAACcgatggagggggaggggaagacgAGGTCGCTGGCCCAACCGACCCTCagcagggaggagaagagacggAGGAGACGTGCGACGGCCAAGTACCGCTCGGCCCACGCCACGCGCGAGAGGATCCGCGTGGAAGCGTTCAATGTGGCCTTCGCTGAACTGAGAAAGTTGCTGCCAACCCTTCCCCCTGACAAGAAACTCTCCAAGATCGAGATCCTCAGACTTGCAATATGCTATATCTCCTATCTCAATCACGTTCTGGATGTCTAGTTGAAATTAGTGAGTTACATTTTCAAATGGGAGAATTGGACAAGGAGAATGGAGGGACCAGAAAGAAATATGGGTGACATGTCACTTATGAAATCGGGGATACATGAAAGTTGCCAGAAAGTACaaaaaaagagaggggaggaagggggggggggggggggggggagtctgcagcctacagcctacttaTCCATGATTTTGAAGAAAATGCCTGTTTGATATTGCGTTTTGGTGAGGCTGGGTAACCCAGATGAACGAAAGGATGGATGTAAACGGAATGATATAGCTGCTTTATAGACATAGCATAGTTGATGTTTCCATAAAGGAGAACAAGTTCAAATGCATTAATGCATTAGTGCCACTTATGACGCGTACAATTGTGACCTTCATCATTGTTATTTAAGTTTAtggaattatttatttaaatgtgttaatattGAAGGTTCTCTTATTTATGTTTATAATAGACAAACGTATTTTATATACATGTCCATTGTTTGTATCATTGTATACATGTATATTTTAGGCTGTGATGATGAACTTCGAAAATGATGTTGTTGCTCTTCAAATGGCACTTTCTGTTTTTGTATTATacggtttttattttattgaattaGTACGTTAAGTGTAATATACTTTTATTCATGTCATGTCTATTGTCTATCAGGCAACGATAAGCACTTAATCATGTTGGGTTAAGTAAACTCATAAAACGTCAAACTTCGTTTAGTTCCCTTAAGTGTAAAGGGGAAGGAAGTTAATCAAAACTGAACAATACACCGAAAACGAATTAGCCTACTAaagaaaaacatccacacaatTTGAATTCGACTAACCGGATATAAAAAGCAAAAATCTAATTGAATGACATCGTTTGTGTTGATATCACTTTACAATTCAGAGGCAAACCTCTTTTGCTGTGACCAAAAAATCATTTCAAAATATTCTGATTTctattaaatgtttttatttcctTAAAAGCTAGAGGtgtttatttatatatctgtCTCTGCTTTGTATCTCAAAAAACATAATAAGTAATTTTATAGCGAAGAAAAACATATCTTCTATCCAAAGATTTTTTGTCTCTTCAGGGTTGTGTACTTGTTGCTTTATGCAGATATTTTGTAGTAGAGTTATTGTGACAGCTGGTTTTTAAGGAAcgcattttttatattttccggTGGTGTTTTTTGATTAAAAAAGGGAAAGAAAT

Function

NR:

description
PREDICTED: helix-loop-helix protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571189.2 False 2250 mRNA 0.39 2 19897030 19900020
TU1744915 True 2219 TUCP 0.39 2 19897060 19900019

Neighbor

gene id symbol gene type direction distance location
tlr22 tlr22 coding upstream 49186 19844336 ~ 19847844 (+)
LOC110495770 LOC100136121 coding upstream 60151 19832923 ~ 19836879 (+)
LOC118941119 LOC100136121 coding upstream 76924 19816649 ~ 19820106 (+)
LOC118941067 LOC106593417 coding upstream 84025 19812002 ~ 19813005 (+)
LOC118941120 LOC100136121 coding upstream 89059 19804510 ~ 19807971 (+)
LOC110495772 LOC106574540 coding downstream 8583 19908603 ~ 19954099 (+)
poglut1 poglut1 coding downstream 69488 19969508 ~ 19975011 (+)
timmdc1 cc001 coding downstream 74994 19975014 ~ 19982950 (+)
LOC110495777 LOC106574545 coding downstream 92539 19992559 ~ 20049054 (+)
LOC110495776 LOC106574545 coding downstream 165945 20065965 ~ 20110618 (+)
G1523896 NA non-coding upstream 38322 19858106 ~ 19858708 (+)
G1523894 NA non-coding upstream 40975 19855726 ~ 19856055 (+)
G1523871 NA non-coding upstream 48192 19848199 ~ 19848838 (+)
G1523783 NA non-coding upstream 265515 19630938 ~ 19631515 (+)
G1523765 LOC106575406 non-coding upstream 296740 19596636 ~ 19600290 (+)
G1523959 NA non-coding downstream 83205 19983225 ~ 19983481 (+)
G1523962 NA non-coding downstream 85702 19985722 ~ 19986153 (+)
G1523994 NA non-coding downstream 149882 20049902 ~ 20104851 (+)
G1523997 LOC106575314 non-coding downstream 152749 20052769 ~ 20118213 (+)
G1523847 NA other upstream 69064 19775092 ~ 19827966 (+)
LOC110495769 LOC106575326 other upstream 136010 19748427 ~ 19761242 (+)
G1523703 LOC106575364 other upstream 389774 19506392 ~ 19507256 (+)
LOC110495755 LOC106574522 other upstream 452721 19436699 ~ 19444433 (+)
G1523614 NA other upstream 518558 19377067 ~ 19378472 (+)
LOC110495784 LOC106574551 other downstream 306472 20206484 ~ 20236753 (+)
G1524124 LOC106574554 other downstream 405685 20305705 ~ 20306904 (+)
G1524181 LOC106574559 other downstream 573340 20473360 ~ 20483713 (+)

Expression


Co-expression Network