LOC110495773 (casq1)


Basic Information

Item Value
gene id LOC110495773
gene name casq1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19959480 ~ 19967828 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571193.2
TGGCCTCATAAAAAGGCCCCAAAAGTGCAATAGAGAGGGGGTCACTTGCTATTTTATTGTGAGCTTTCCACTCTACCAAAGCTCCCTGGATTCACTTTTGGGGACTTATTTTTTTAACTACAGTGTGAGGCAgtcaagaaagagaaagagagagagagagaaggaaagagagagaacgaggaaggaaaagagagagaggggcagaaagagaactagagagagtgaggaagagagagagaaagagagaatgaaataATACAACCAGAGCTGGAGACTTTAGGGCGAACAACAATTCTACTCTTGcttgttatttatttttacgTTATTTTTCTGTTTCTTTTACTGGTGCAAATTGGTGGCTAGTACTGGCTACTATCCATTGAAGTCTCAAGGGTTATAGTTCTGTATAGTTTCTGCTGCTTCTTCCAGTTCCTACTCATTGTCCATTAGTGGACATTTCCCTCTAAGAAAGATGCAGCTCTTCTGGCTGTCTCTGTTGCCCTGTCTGTACGTGACCTCTCTGTGCACTGCAGAGCAGGGACTGGAGTTCCCCAGCTTTGACGGGAAGGACCGCGTTCTGCACATCAACGAACGCAACTACAAGAAGGCTCTGAAGAGGTTTGACATGCTGTGCCTACTCTACCATGAACCGCAACCGGCTCACAAAGGCAGGCAGAAGCAGCTTCAGATGACTGAGCTTGTGCTGGAgCTGACTGCACAGGTCCTGGAGGACAAGGACATTGGCTTTGGGATGGTCGACTCCCAGAAGGACGCCAAAGTTGCCAAGAAACTGGgtttggaggaggagggcagTCTGTACATCTTCAAGGATGACCGTGTGATTGAGTTTGACGGAGAATTCTCAGCAGACACCCTGGTGGAATTCCTGCTGGATGTGTTGGAGGACCCAGTGGAGCTCATCAGTAACCCTATGGAACTGAGGGCCTttgagaggatggaggaagacaTACGCCTCATTGGTTACTTCAAGGGAGAGGACTCATACTACAAGGCGTTCCAGGAGGCCTCAGAGCGGTTTCAGCCCTACATCAAGTTCTTCGCCACATTCGACAAAGCTACGGCGAAGCACCTTTCTCTGAAGATGAACGAGGTGAACTTCTATGAGCCCTTCATGGAGGAACCAGCCATCCTCCCTGGCAGGCAACTCTCAGAGATGGAGATAGTGGAGTTTGTCCACCAACACAAAAGGGCGACTCTGAGAAAGTTGCGTGCAGAGGACATGTTTGAGACGTGGGAGGATGACTTGGATGGGATCCACATTGTAGCCTTTGCTGAGGAGGAAGACCCTGATGGTTATGAGTTCCTGGAGATCCTGAAAGACGTGGCCAGAGACAACACCAACAACCCTGAGCTCAGTATAGTGTGGATAGACCCTGATGACTTCCCACTGCTGACCACATACTGGGAGAAGACCTTCAAGGTGAACCTGTTTAAGCCTCAGATTGGAGTTGTGAACGTGACAGACGCGGACAGTGTCTGGCTGGACATGTCCAACGATGAAGACCTGCCCACAGCTGAGGAACTGGAGGACTGGATAGAAGACGTGCTGTCTGGGAAGGTCAACACTGAGGATGACGATGATGTGAAGGATGATTATGATTATGACGGGGTTGACAGGGAGGATAGGCACCATGGTGACGATCACGAGGACCATGGAGACTATGGCGACCATGATGACAGTGGCTAACCTGCAGTCCAGCAGAGATTTCCTGGGTTATGTTTTATTGAACAGTCTGGTATTTTATATTGTATTTTCATGGAAATTGTAGGGTGAAATGATAGTTGCATGGGAATGATCTAATAGTAAACGCTTGGTTTCTTTGGGATGTATTTAAATAAGTGCACGTATAGCCTTTACTGCTTGACACCAGGTAGTTAGTTATCTGTAGTGTTCAGTTCTTTGTACTAGAAGCACTAAAATAACCAATTGTTACCATGCAATTTCTCAGACCATAGCAAGTAAATACTTAATTAGACTGTGAAATAACCTGTAACATCAGTACATCGTATAATTACTTTTTacattttctaaataaaagctaAAGCTTCTTTATGGTGGAGGATTGTATAAGTTAAAGGTTCTTATGAGACCAGGTTGTGTTGTCTCGATTCCATAAATACTTGATTGTATATGTGATACTGTATGAATAAATGTAATGTAACCTAAA

Function

symbol description
casq1 Enables calcium ion binding activity and identical protein binding activity. Involved in protein polymerization and regulation of calcium ion transport. Located in endoplasmic reticulum. Implicated in type 2 diabetes mellitus.

NR:

description
calsequestrin-2-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23445 CASQ2; calsequestrin 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571193.2 True 2189 mRNA 0.46 11 19959480 19967828

Neighbor

gene id symbol gene type direction distance location
LOC118941046 LOC103370040 coding downstream 95246 19860204 ~ 19864234 (-)
LOC110495768 LOC106574536 coding downstream 166026 19762474 ~ 19793454 (-)
trnan-guu-14 NA coding downstream 282748 19676659 ~ 19676732 (-)
LOC110497086 LOC106574531 coding downstream 310729 19584834 ~ 19648751 (-)
LOC110495765 NA coding downstream 378246 19578492 ~ 19581234 (-)
LOC110497091 LOC106574544 coding upstream 82612 20050440 ~ 20058151 (-)
LOC110495778 LOC106575314 coding upstream 145478 20113306 ~ 20140842 (-)
LOC110495781 LOC106574547 coding upstream 210773 20178601 ~ 20192178 (-)
LOC110495785 LOC106574553 coding upstream 272084 20239912 ~ 20248333 (-)
LOC110495786 LOC106574549 coding upstream 283446 20251274 ~ 20255220 (-)
G1524860 NA non-coding downstream 41724 19917375 ~ 19917756 (-)
G1524838 NA non-coding downstream 78617 19880614 ~ 19880863 (-)
G1524831 NA non-coding downstream 93564 19865652 ~ 19865916 (-)
G1524824 NA non-coding downstream 105280 19853920 ~ 19854200 (-)
G1524823 NA non-coding downstream 105822 19853360 ~ 19853658 (-)
G1524893 NA non-coding upstream 5307 19973135 ~ 19974915 (-)
G1524900 NA non-coding upstream 15815 19983643 ~ 19984222 (-)
G1524985 LOC106574545 non-coding upstream 135475 20103303 ~ 20104396 (-)
G1525012 NA non-coding upstream 199818 20167646 ~ 20167871 (-)
G1524755 LOC106581475 other downstream 229412 19722745 ~ 19730068 (-)
LOC110495764 LOC106574529 other downstream 382380 19573628 ~ 19577133 (-)
G1524473 LOC106574589 other downstream 795354 19143985 ~ 19164126 (-)
G1524311 NA other downstream 1210085 18749125 ~ 18749395 (-)
G1523241 NA other downstream 1392233 18561906 ~ 18567247 (-)
LOC110497093 LOC106574562 other upstream 603268 20558557 ~ 20595753 (-)
G1527230 NA other upstream 2294228 22262056 ~ 22262462 (-)
G1528018 NA other upstream 2904217 22872045 ~ 22885833 (-)
LOC110495841 LOC106574435 other upstream 3191730 23008547 ~ 23168591 (-)
LOC110495851 LOC106574449 other upstream 3513712 23479558 ~ 23541681 (-)

Expression


Co-expression Network