timmdc1 (cc001)


Basic Information

Item Value
gene id timmdc1
gene name cc001
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19975014 ~ 19982950 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571196.2
ACAATGGTCTCCAATGAATGTGTATGTTTGGTCCTCCACCTGAAGGGGGTGCTCTCCAACCAAATAGGTTTAATTTACTAGCTAGCAGTTCAGGGGTGTACCGGTGGAAATCAGAAGCAGATCCAGCTCCCATTGCTGGTGAAGCGTACATGATGCATCCTCCTGAACGGCCTGGTGCGTCCCCAGCCCCGTGTCAGCAGGCAGCCTCTGCCCCCCAGGGCACCCTCTGCACCAGACCACTGGGGGGTCTCCTCCAGCTAGCCATGCCCTCCCTGGGCCGCCTCCTCCCCAGGGTCCATGCAGCTGACAGTGTGGCGCCTGCCCCGGTACACATCCCCTCCCCCCTGCCCAGCCTCGTGGGCAAGCCAGAGTTCCCAGACACTGGATGGGACCGCATCAAGGATCTCTTCGACAGGGATGAAATGCAGAAGTATCCTGAGGAGCTCTCCAGCGTGGTGAAGAGTACCTTAGCTGCCGCCTTGGCCGGCATGATCTACGGAGGGCTGCCCGCCGCCCGGCACGCCAGGGAGAGGTACATCCAGCTCCACCAGGCTGAGATATACCACAGCCGGGTGGAAGCTGTGCGTTCTGCCCATAATGCAGCCATCCGGGGCTTTGTGAGGTATGGCTGGAGGTGGAGCTGGAGAGTGGCAGCCTTCGTCACATTATTCAAcaCTGTGAGCACAGGCCTGTCTGTGTACAGAGATAAGTATACCCACAGCCACTACGCAGCAGCAGGAGCTGTGACAGGAGGCCTATTCAGGCTGAACCTGGGTCTCGGGGGACTGGTGGCAGGCACGGCCATAGGAGCAACCATGGGGGTGCCGGCAGGAGCTCTGATCATCGCCATGCAGGGATTGGCGGGAGAAACGGtccgggagaggaggaggagggagcgcAGAGCGCTGTATGAACTAAAACTGGCAGAATGGAGTGCCCGTTTGCAGTTGACGGATGACCTGATTGGTGATTTGAGCAGCAGTGGGCGGATCCAGGATGTAGACCAGGACATACAGAAGATCCAGGAGCTGCTCAGTTTACCACGGAACGAGGGCGTGGCCCAGGACTCTGACAGCCATTGACAGCAGCTGAAATACTCTAACTGATACCAATCATAGCCATCCTCACAGACAGAAAATGGTGGGTGAGACTTTCCTCACCTCTGAGGACATACTGTTTTCTTTTGATGTCGACTACTCTATTCTATGTTCTGTTGAATACAAAAGAGGACCTACTTATTTGCTCAACAAAATATGTATTGATGCTGAATTATGATTTATACTGTAAATGTGATTACTTTGTCTGGAACTTTGAAATGATTTCCAACATATTTAATATAAATGGCAATAATGACACAGTA
>XM_021571197.2
TAATTTACTAGCTAGCAGTTCAGGGGTGTACCGGTGGAAATCAGAAGCAGGTAGGAAAGACAAACTACAAGGACATTTCAGAATAAATTGATCCAGCTCCCATTGCTGGTGAAGCGTACATGATGCATCCTCCTGAACGGCCTGGTGCGTCCCCAGCCCCGTGTCAGCAGGCAGCCTCTGCCCCCCAGGGCACCCTCTGCACCAGACCACTGGGGGGTCTCCTCCAGCTAGCCATGCCCTCCCTGGGCCGCCTCCTCCCCAGGGTCCATGCAGCTGACAGTGTGGCGCCTGCCCCGGTACACATCCCCTCCCCCCTGCCCAGCCTCGTGGGCAAGCCAGAGTTCCCAGACACTGGATGGGACCGCATCAAGGATCTCTTCGACAGGGATGAAATGCAGAAGTATCCTGAGGAGCTCTCCAGCGTGGTGAAGAGTACCTTAGCTGCCGCCTTGGCCGGCATGATCTACGGAGGGCTGCCCGCCGCCCGGCACGCCAGGGAGAGGTACATCCAGCTCCACCAGGCTGAGATATACCACAGCCGGGTGGAAGCTGTGCGTTCTGCCCATAATGCAGCCATCCGGGGCTTTGTGAGGTATGGCTGGAGGTGGAGCTGGAGAGTGGCAGCCTTCGTCACATTATTCAAcaCTGTGAGCACAGGCCTGTCTGTGTACAGAGATAAGTATACCCACAGCCACTACGCAGCAGCAGGAGCTGTGACAGGAGGCCTATTCAGGCTGAACCTGGGTCTCGGGGGACTGGTGGCAGGCACGGCCATAGGAGCAACCATGGGGGTGCCGGCAGGAGCTCTGATCATCGCCATGCAGGGATTGGCGGGAGAAACGGtccgggagaggaggaggagggagcgcAGAGCGCTGTATGAACTAAAACTGGCAGAATGGAGTGCCCGTTTGCAGTTGACGGATGACCTGATTGGTGATTTGAGCAGCAGTGGGCGGATCCAGGATGTAGACCAGGACATACAGAAGATCCAGGAGCTGCTCAGTTTACCACGGAACGAGGGCGTGGCCCAGGACTCTGACAGCCATTGACAGCAGCTGAAATACTCTAACTGATACCAATCATAGCCATCCTCACAGACAGAAAATGGTGGGTGAGACTTTCCTCACCTCTGAGGACATACTGTTTTCTTTTGATGTCGACTACTCTATTCTATGTTCTGTTGAATACAAAAGAGGACCTACTTATTTGCTCAACAAAATATGTATTGATGCTGAATTATGATTTATACTGTAAATGTGATTACTTTGTCTGGAACTTTGAAATGATTTCCAACATATTTAATATAAATGGCAATAATGACACAGTA

Function

NR:

description
complex I assembly factor TIMMDC1, mitochondrial isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K23505 TIMMDC1; complex I assembly factor TIMMDC1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571196.2 False 1360 mRNA 0.54 8 19975014 19982950
XM_021571197.2 True 1330 mRNA 0.54 8 19975084 19982950

Neighbor

gene id symbol gene type direction distance location
poglut1 poglut1 coding upstream 3 19969508 ~ 19975011 (+)
LOC110495772 LOC106574540 coding upstream 20915 19908603 ~ 19954099 (+)
LOC110495771 LOC106574539 coding upstream 74994 19897030 ~ 19900020 (+)
tlr22 tlr22 coding upstream 127170 19844336 ~ 19847844 (+)
LOC110495770 LOC100136121 coding upstream 138135 19832923 ~ 19836879 (+)
LOC110495777 LOC106574545 coding downstream 9609 19992559 ~ 20049054 (+)
LOC110495776 LOC106574545 coding downstream 83015 20065965 ~ 20110618 (+)
LOC110495779 LOC106575341 coding downstream 179835 20162785 ~ 20164464 (+)
si:busm1-52i16.2 LOC106574552 coding downstream 184283 20167233 ~ 20170345 (+)
LOC110495784 LOC106574551 coding downstream 223534 20206484 ~ 20236753 (+)
G1523896 NA non-coding upstream 116306 19858106 ~ 19858708 (+)
G1523894 NA non-coding upstream 118959 19855726 ~ 19856055 (+)
G1523871 NA non-coding upstream 126176 19848199 ~ 19848838 (+)
G1523783 NA non-coding upstream 343499 19630938 ~ 19631515 (+)
G1523959 NA non-coding downstream 275 19983225 ~ 19983481 (+)
G1523962 NA non-coding downstream 2772 19985722 ~ 19986153 (+)
G1523994 NA non-coding downstream 66952 20049902 ~ 20104851 (+)
G1523997 LOC106575314 non-coding downstream 69819 20052769 ~ 20118213 (+)
G1524032 NA non-coding downstream 140898 20123848 ~ 20124587 (+)
G1523847 NA other upstream 147048 19775092 ~ 19827966 (+)
LOC110495769 LOC106575326 other upstream 213994 19748427 ~ 19761242 (+)
G1523703 LOC106575364 other upstream 467758 19506392 ~ 19507256 (+)
LOC110495755 LOC106574522 other upstream 530705 19436699 ~ 19444433 (+)
G1524124 LOC106574554 other downstream 322755 20305705 ~ 20306904 (+)
G1524181 LOC106574559 other downstream 490410 20473360 ~ 20483713 (+)

Expression


Co-expression Network