LOC110495776 (LOC106574545)


Basic Information

Item Value
gene id LOC110495776
gene name LOC106574545
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20065965 ~ 20110618 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036952233.1
CTAGGCGCATATGGCAGACCGGTTGTAGTTTTTATGGCCGATATAACGAGCTGGTAGCGAAAACTTTGATCAAACAATTCAGGGACGGAAATAAGTAAATCAGATTACATAATTATATGTAAGGATAGGAAATCGAAATACAATTACGAAATAATCTGTAATTGTCAATGGTAAAACAAAGCTTAAGACGATGTTTGACAACCTTGAAAACAGAAAATGAATGTGAATTCGTCTGGACACGGTAGACTCCTCCTCACCGGTCTATTTATTTACACATTTTGGCATGGTGTCATAACACAACAATGGAACAACTGAAGAGAGATGTGCAATTTAATCCATTAACAACAGCCAATTTATTTTCACGGGTGTTTTTCTGTTGGGTAACCCCTTTATTCAGTATTGGAAATAAGCGGAGGCTAGAGGAAGATGACATGTACCAAGTGCTTCCCGGTGATGCTTCTCAGGGCCTGGGAGAGGAACTACAGAGACATTGGGATAAGGAGGTTCGAATGGCTGCCAAGGAACTGCGGATGCCCAAACTCACCAAAGCCATCGTGAAGTGCTATGGGAAACCCTACGCAGTGCTGGGGATCTTTAGTTTCACTGTAGAGGTGGTTAAGGTGATCCAGCCAGTGTTCTTGGGAAAGCTGATCCAATACTTTGAGAAGTACGATCCAAATAACATGGATGCACTCTATGAGGCCTTTGGCTACGCTGCTGGTGTCTCTCTGTCCACCGTTGCACTGACCGTCCTCCAAAGTCTCTACTTCTACCACGTCCTGAGGACCGGCATGAAGATACGAGTGGCCATGTGTCACATGATCTACAAGAAGGCCCTGTGTCTCAGCAGTGCAGCGATGGGAAGAACAACCACAGGCCAAATAGTGAACCTGCTATCCAACGATGTCAACAGGTTTGATGAGGTGACCACCAATCTGCACTACCTCTGGATAGCACCTCTGCAGGCTGTGGTGGTTATCAGTCTCCTGTGGTATGAGATTGGCCCGTCGTGCCTGGCAGGCGTGGCTGTCCTTTTGTTCCTTATGCCACTACAGACCATGTTTGGAAGGCTCTTCGGCTCCCTCAGGAGTAAAACTGCTGTCCTCACAGACAGTAGAATACGCACCATGAATGAAGTGGTGTCTGGAATCAGGATCATCAAAATGTATGCCTGGGAGAAGCCCTTCTCAGCACTGGTCAATGAAGTCAGAAGGAAAGAGATCTCCAAGATCATGTCTAGCTCCTTCCTGCGAGGCCTAAACATGGCCTCCTTCTTTGTGGCCAGTAAGATCATTGTTTTCATCACCTTCGCCGTCTACGTCCTCCTGGGGAACACCATCTCAGCCAGCCGGGTGTTTGTGGCAGTGTCTCTATATGGTGCCATCAAGCTCACGGTGACCCTCTTCTTCCCACTGGCCATCGAGAAGGTGTTCGAGACCATCATCAGTATCCACAGGATCAAGAATTTCCTTCTGTTGGATGAGATTGAGAGACCCAACATGAGATTCACCTTGGAGGAAAAGAAAGACGCCTCTGTTGAGATCAAGGACTTAATTTGCTACTGGGACAAGTGTCTGGATGCCCCGTCTCTCCAGAACCTGTCACTCACAGTGAAATCGGAGCAACTCGTTGTTGTCATTGGACCTGTGGGAGCAggaaagTCCTCCCTGCTCAGCGCTATCCTGGGGGAGCTGCCTCGTGACAAGGGGGTGTTGAGTGTCAAAGGTCAGCTGACCTACGCCTCCCAGCAGCCCTGGGTGTTCCCTGGAACCATCCGCAGCAACATCTTGTTTGGCAAAGAGCTCCATCCTCAGAAGTATGAGAAGGTCCTGAGAGCCTGCGCCCTCAAGAGGGACATGGAGCTGCTGCCAGACGGGGACCTGACattgataggggacagaggagCAACCCTCAGTGGGGGACAGAAAGCTAGAGTGAACCTGGCCCGGGCTGTGTACCAGGATGCTGACATCTACCTGCTGGACGACCCTCTAAGTGCTGTGGATGCTGAGGTCGGGAAACACCTGTTTGAACAgTGTATCTGTGGTATTCTGAAGAATAAGCCCCGCATCCTGGTCACCCACCAGTTGCAGTACCTCCAAGCAGCCAACCAGATCCTCGTCCTCAAGGAGggtcacGTGGTAGCGAGGGGGACATACTCCGAGCTGCAGCACTCTGGGGTTGACTTCACCTCCCTGctgaagagggatgaggaggaggagccaCAAACCAACAACAATCACTCAGTGGTCAAACACGCCTTTTCCCAGAACTCAATATCctcccacacctcctccatgcacTCTGTTAAAGATGGAGCTGAACAGCTTCCGgaGGAGCTTGTCCAGGCAGTAGCAGAGGAGAGCCGATCGGAGGGCAACATTGGCGCCAGCCTATACTTCAAGTACTTAAACGCAGGAGCCAGCATCCTGGTTATGCTGGGCACAGTCCTCCTCAGTCTCATCGCGGAGGTAGCGTAtgttcttcaggattggtggctGGCTTATTGGGCAGGAGAGCAGGAGAAACTCAATATTAATAGCACTATGATTGTCCAAAATGGCCTCAACATCACTCAAGAATTGGACCTCCGTTTCTACATGGGTATTTATGCAGGTTTGACTCTGGCCTCAGTTATCTTTGGCTTTGCCAGGAGTCTGGTGATGTTCAATGTGCTGGTGAAAGCTGCTCAGTCTCTGCACAACCGTatgttcatctctctcctccgGACGCCTGTACGCTTCTTTGACATCAACCCAATTGGAAGAATTCTCAACAGGTTCTCTAAGGACATTGGCCAGCTGGATTCCATGCTACCTATTACCTTTGTTGACTTCAGTCAGTTGATCCTGCAGAATATTGGCGTGGTGGCGGTGGCAGCGGCAGTCATGCCCTGGATCCTCATTCCTGTCGTTCCTCTACTTATCATATTCCTGTTTCTGAGGCGCTACTTCCTGCAGACGTCACGAGACGTCAAACGCCTGGAGTCCACCACTCGGAGTCCCGTCTTCTCCCACCTGTCCTCGTCCCTCCAAGGTCTGTGGACGATCCGAGCCTTCAGAGCCGAGGAGAGATTCCAGAACACCTTTGACACTTATCAGGATCTGCACACAGAGTCCTGGTTCCTGTTCCTGGTCACTTCTCGCTGGTTTGCTCTCCGACTGGATGGAATCTGTGCGGCCTTTGTCACTGTCACCGCCTTCGGCTGCCTATTCCTCAGAGATGGGCTGGAGGCGGGAGCTGTGGGTTTGGTATTGTCCTACGCTGTCACCCTTCTTGGGAACTTCCAATGGACCATTCGTCAGAGTGCAGAGATGGAGAACATGATGACATCAGTAGAGAGGGTGGTGGAGTACACAGAGCTGGAGAGTGAAGCACCCTGGGAAACCCAGAAACATCCTCCTCCCGAGTGGCCAAGCCAAGGCCTCATCACCTTTGACCGGGTCAGCTTCTCCTACAGCTCAAAAGGACCTGTGGTCCTGAAGGACATGAAGGCCATGTTCAGGCCCAAAGAGAAGGTTGGCATCGTGGGCAGGACGGGTGCAGGGAAAAGCTCCCTTGTATCGGCGCTCTTCCGCCTGGCAGAGCCAGAGGGCAGGATCTACATCGATGGAGTTTTGACTTCCGAGATCGGCCTTCATGACCTGCGCCAGAAGATGTCCATCATACCTCAGGACCCAGTGCTTTTCACGGGCACTATGAGGAAGAACCTGGACCCTTTCAGCCAGCACACAGACGAGGACCTGTGGAACGCTCTCCAAGAGGTCCAGCTGAAGTCTGTTGTGGAGGAGCTGCCCAATAAGATGGAGACGGTTCTGGCTGAGTCGGGCTCCAACTTCAGTGTGGGTCAGAGGCAGCTGGTCTGCCTGGCCCGAGCCGTCCTGAGGAAGAACCGCATCCTCATCATTGACGAGGCCACGGCCAACGTGGACCCCAGAACAGACGAGTTGATCCAGAAGACAATACGAGACAAATTCAGGGAGTGCACCGTGCTCACCATCGCCCACCGCCTCAACACCATCATAGACAGCGACCGCATTCTGGTGCTAGGCGCTGGTATGATCCAGGAGTTTGACGAGCCGTACGTCCTGCTTCAGAACCAGGAAAGTGCCCTCTACAGGACAGTCCAGCAGATGGGCAAGGCTGAGGCAGCTTCCCTGCTGGAATCAGCCAAACAGGCGTATATGAACAACGGCAACAGCCATGGTCCAAAAATGGCCTTTGAGACGGTTGTGTGACGGTGCAGGGGCTTGACGAGCAGAAAGAGATATCACATATCTGCCCAATTTATATATTTGTTCCACTAATTGATCTTTTAACCAATAACATCACCCTggctgtgtaaacgcagccagagTCATTTTAAAATGGTAAGTTGTTGATTACTTGTTTGCTTGCAAAATCAGGTAAAAATTTATGGAACTGACTTTATTTAATATGCAGTGCTTTATcagcttttttttatttaaataaggAAGCAAAATGTGTTTCCTTAGACACTTTGATGTGTGTTGCATCTTTAATACTACTTTCATTGACAATCATAAGAATAGTATTACAACAATGGAAGTAGCATTGCATTTTCATACTTTGTGCCTCAATCTTTTACTATTTGAACTTCTGCTACTCCTATTGATTTATTCTACTGCACAGTATCCTGACATCATGCTGCACTGTGCAATGGAACTAATTGGCGTGTGTATTCATATACTATACGTGCAATAGAAAATTACACTTCACCATTGTACTCACATGAAAAGTCATGCTGTCATTATGCTATAAGGGATTCAGGGATTTTCATGAGGATTAACTTGACCAAAGTGAGTAACCCATGTATGTCTCACGTTGTTTGCATGAGTGAAAGCTGTGTGATGGTTGTAAGAACAATCTAGATCATTTACAAGCAGGAATACCTACCCGTCAATGTGAAAATGCATTGAACTTTAAACTTATCTTGAACTTTGACTTATTCCCTAATGGGGCAGTACAGAGAGACCTTGATCttagctttaaaaaaatataattttgattCCATTGGTTTTGCAGTGGatgtcaaattaaattgttttcccAAA
>TU1744971
TCATAACACAACAATGGAACAACTGAAGAGAGATGTGCAATTTAATCCATTAACAACAGCCAATTTATTTTCACGGGTGTTTTTCTGTTGGGTAACCCCTTTATTCAGTATTGGAAATAAGCGGAGGCTAGAGGAAGATGACATGTACCAAGTGCTTCCCGGTGATGCTTCTCAGGGCCTGGGAGAGGAACTACAGAGACATTGGGATAAGGAGGTTCGAATGGCTGCCAAGGAACTGCGGATGCCCAAACTCACCAAAGCCATCGTGAAGTGCTATGGGAAACCCTACGCAGTGCTGGGGATCTTTAGTTTCACTGTAGAGGTGGTTAAGGTGATCCAGCCAGTGTTCTTGGGAAAGCTGATCCAATACTTTGAGAAGTACGATCCAAATAACATGGATGCACTCTATGAGGCCTTTGGCTACGCTGCTGGTGTCTCTCTGTCCACCGTTGCACTGACCGTCCTCCAAAGTCTCTACTTCTACCACGTCCTGAGGACCGGCATGAAGATACGAGTGGCCATGTGTCACATGATCTACAAGAAGGCCCTGTGTCTCAGCAGTGCAGCGATGGGAAGAACAACCACAGGCCAAATAGTGAACCTGCTATCCAACGATGTCAACAGGTTTGATGAGGTGACCACCAATCTGCACTACCTCTGGATAGCACCTCTGCAGGCTGTGGTGGTTATCAGTCTCCTGTGGTATGAGATTGGCCCGTCGTGCCTGGCAGGCGTGGCTGTCCTTTTGTTCCTTATGCCACTACAGACCATGTTTGGAAGGCT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036952233.1 False 5075 mRNA 0.49 29 20065965 20110618
TU1744971 True 783 TUCP 0.49 6 20066254 20076312

Neighbor

gene id symbol gene type direction distance location
LOC110495777 LOC106574545 coding upstream 16911 19992559 ~ 20049054 (+)
timmdc1 cc001 coding upstream 83015 19975014 ~ 19982950 (+)
poglut1 poglut1 coding upstream 90954 19969508 ~ 19975011 (+)
LOC110495772 LOC106574540 coding upstream 111866 19908603 ~ 19954099 (+)
LOC110495771 LOC106574539 coding upstream 165945 19897030 ~ 19900020 (+)
LOC110495779 LOC106575341 coding downstream 52167 20162785 ~ 20164464 (+)
si:busm1-52i16.2 LOC106574552 coding downstream 56615 20167233 ~ 20170345 (+)
LOC110495784 LOC106574551 coding downstream 95866 20206484 ~ 20236753 (+)
LOC110497092 NA coding downstream 133736 20244354 ~ 20245888 (+)
LOC110495788 LOC106574550 coding downstream 185399 20296017 ~ 20302100 (+)
G1523962 NA non-coding upstream 79812 19985722 ~ 19986153 (+)
G1523959 NA non-coding upstream 82484 19983225 ~ 19983481 (+)
G1523896 NA non-coding upstream 207257 19858106 ~ 19858708 (+)
G1523894 NA non-coding upstream 209910 19855726 ~ 19856055 (+)
G1524032 NA non-coding downstream 13230 20123848 ~ 20124587 (+)
G1524034 LOC106575314 non-coding downstream 14450 20125068 ~ 20126928 (+)
G1524059 NA non-coding downstream 81717 20192335 ~ 20192563 (+)
G1524069 NA non-coding downstream 100647 20211265 ~ 20212004 (+)
G1523847 NA other upstream 237999 19775092 ~ 19827966 (+)
LOC110495769 LOC106575326 other upstream 304945 19748427 ~ 19761242 (+)
G1523703 LOC106575364 other upstream 558709 19506392 ~ 19507256 (+)
G1524124 LOC106574554 other downstream 195087 20305705 ~ 20306904 (+)
G1524181 LOC106574559 other downstream 362742 20473360 ~ 20483713 (+)
G1525320 NA other downstream 646073 20756691 ~ 20757412 (+)
LOC110497098 LOC106574424 other downstream 2488795 22599016 ~ 22641368 (+)

Expression


Co-expression Network