LOC110495779 (LOC106575341)


Basic Information

Item Value
gene id LOC110495779
gene name LOC106575341
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20162785 ~ 20164464 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021571205.2
gtgtcagtgagtgaTGTGTATCCTTGGGATTGGTCCAGAGGTAGAAGTGCAGAGGCTTGAACACAGAGCCCTCCCTGTTGAGCATAAACCAGGCTACGACATCTTAACCACGGACACACTTCACCTCCTAACCATTCATCCTGGACTGACTCTGCTCGCCATCCACTATCTTCAGCTCCACAGACAGTCTCATCTGTCGCAGTTGCTGTTAACCAGCTTACCTGACCCAGCTCTacaacagacaggacaggactatCCGAGGAGGATGAGCAACATGGCCACGGAGATCGTTGCCTTCATCCTGACCATATCTGGATGGATCCTGGTCTGCTCCACGTTGCCTACTGACTACTGGAAGGTGTCCTCCGTGGATGGGACGGTCATCACCACGGCGACCTTCTGGTCCAACCTGTGGAAGACCTGCGTCACGGATTCTACAGGAGTGTCCAACTGTAAAGATTTCCCCTCCATGCTGGCTCTGGATGcgtATATCCAGGTGTGTCGGGGCCTGATGATTGCGTCTGTGTGCCTGGGGTTCTTTGGAGCCACCCTGGCCCTGATGGGAATGAAGTGTACCAGGATCGGAGGCTCAGAGAGCACCAAGGCCAGACTAACAGGCCTCTCAGGCCTTCACTTCATACTCAATGGGCTTTGCTCCTTGACTGCATGCTCCCTGTACGCCCACAGGATCACATCAGAGTTCTTTGACCCACTCTTTTTTGCTCAAAAGTTTGAGCTGGGCGCAGCGCTCTTCATCGGCTGGGCTGGCTCGGTGCTCTGCATTTCAGGAGGACTCATATTCTGCCTCTCCTTGTCAGAGGGCTTCAGGCAAGTTTGTACAATTTAATTCAACGATGGTCAATTACAGAAAAGTATTACTTTGATAGACGTGTTCCCCCCCTCCATTTACTCAGTGTGTTATGTAATCTGTAAGTACGGTATGTATCTCAACATCA

Function

NR:

description
claudin-10-like

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021571205.2 True 956 mRNA 0.52 4 20162785 20164464

Neighbor

gene id symbol gene type direction distance location
LOC110495776 LOC106574545 coding upstream 52167 20065965 ~ 20110618 (+)
LOC110495777 LOC106574545 coding upstream 113731 19992559 ~ 20049054 (+)
timmdc1 cc001 coding upstream 179835 19975014 ~ 19982950 (+)
poglut1 poglut1 coding upstream 187774 19969508 ~ 19975011 (+)
LOC110495772 LOC106574540 coding upstream 208686 19908603 ~ 19954099 (+)
si:busm1-52i16.2 LOC106574552 coding downstream 2769 20167233 ~ 20170345 (+)
LOC110495784 LOC106574551 coding downstream 42020 20206484 ~ 20236753 (+)
LOC110497092 NA coding downstream 79890 20244354 ~ 20245888 (+)
LOC110495788 LOC106574550 coding downstream 131553 20296017 ~ 20302100 (+)
LOC110495791 LOC106575306 coding downstream 149073 20312098 ~ 20328610 (+)
G1524034 LOC106575314 non-coding upstream 35857 20125068 ~ 20126928 (+)
G1524032 NA non-coding upstream 38198 20123848 ~ 20124587 (+)
G1523997 LOC106575314 non-coding upstream 44572 20052769 ~ 20118213 (+)
G1523994 NA non-coding upstream 57934 20049902 ~ 20104851 (+)
G1523962 NA non-coding upstream 176632 19985722 ~ 19986153 (+)
G1524059 NA non-coding downstream 27871 20192335 ~ 20192563 (+)
G1524069 NA non-coding downstream 46801 20211265 ~ 20212004 (+)
G1524092 NA non-coding downstream 85814 20250278 ~ 20250488 (+)
G1524097 NA non-coding downstream 94723 20259187 ~ 20260077 (+)
LOC110495771 LOC106574539 other upstream 262766 19897030 ~ 19900020 (+)
G1523847 NA other upstream 334819 19775092 ~ 19827966 (+)
LOC110495769 LOC106575326 other upstream 401765 19748427 ~ 19761242 (+)
G1524124 LOC106574554 other downstream 141241 20305705 ~ 20306904 (+)
G1524181 LOC106574559 other downstream 308896 20473360 ~ 20483713 (+)
G1525320 NA other downstream 592227 20756691 ~ 20757412 (+)
LOC110497098 LOC106574424 other downstream 2434949 22599016 ~ 22641368 (+)

Expression


Co-expression Network