si:busm1-52i16.2 (LOC106574552)


Basic Information

Item Value
gene id si:busm1-52i16.2
gene name LOC106574552
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 20167233 ~ 20170345 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036951385.1
AGCGAACACAACCACTCTTTTGTTCATTCTCTCTTATTAGCCCTTGATTAATGAAAAGCATGAATTACCACCATATAGGTCCATGCATCACAACAGTGGGTCCAATCCAATGTCCCATCTACTTTGCCAATAAGCCGAGGGACTCGGTACAAAGAAGACCCTTCTCATCTTCACTCACCACAAGAAAATCCATTCCCCATGCAACTAATACCATCAGAGAGAGCCGTGGATTTAAGCATAATTATATGAGGCCAAAGACGTTGTGTTTTAATTATATAAGTGAAGCAGGCAGCACACCTAGCTAATAACCTACCGCAGCCTGAGGCAATGTCAACGGACAATGGAAGCGCTTCAACGGACTCTGAAGTTGTAATTCCTCAGCTAATGAGTTCTTATTGAACTAGTTAAGGTCAGACCAGCACTGTATTTAAAATAATGATAATCTTGAGATGAGGTCAAGTTTTTCCCATAGCCTTTGGGCCGTACTAGGTCATGTTTATGTATTTCGAATACATTCGATCAGAATTAGTCAAATAAATCAAAAACCCAAGGAATCAGCTCGGGACATAGAGATGGATGTTTTTGAAACGTGAGATAAACGCTTAGGTCAACATCTTTAGCACCCAAACAGGGTTCTGGGAACCTGAGCAGCAACAGACCCACATCCACCCTCATGCAGTATGGGAAAAGTGACAACCAGGTAGAGCGACAAAATGACTGTCTCCTTAGTCGTACTGAGCCCTGCTACCAAGCTGTATGACTGGGATGAGCAGGTTTCttctacagcacagcacagcacagcaggagACTCAGGCTCCACTGGACGGTGGCTCCACCAAGGAGACACACCATCGTATAGACGAGGGAAAAAGGAATCGCCAAATAAGTCAGATCTCGAAAAAGGAAACGCAACAGAGACGGTCATAATAAGACAACTTGAGGGTTATCTAGATATAGAGCATATAGACTGACTCCACACACCGGAGTATCAGGATGAAAATCCGCGTGATGCAGATCTGGGGCTTCCTGATGACAGTGCTGGGCTGGATCTTTGTGGCATGCACCATGGCCATGGAGGGCTGGAAGGTCACGTCCATCGGGGGCATGGGCGGCTCGGCTGTCATCAAGGTGGCCTGGTACTGGTCTAACCTGTGGAAGGCCTGCTTCACCGATTCCACTTCTGTCACCAACTGCCAAGACTTCCCTGTGCTCTGGTCCGTGGACAACCACATCCAGATTGTGAGGGGCCTGCTGATGGGTGCTCTGTCTGTGGGGATGCTGGGGTTCGTACTCAGTCTCATTGGGATGGAGTGCACCTTCCTCGGGGGCAAGGACAAGGCGAAGTACAGGAAGCTCTTTACTGGAGGAGTCTGTCACATCATCAGTGGCTTTCTGGCTGCGTCGGGATATGCTGTCTACGCAAAATACGTCTCTGGGGAATACTTCAACCCCTATTTTGACGGATTAAAgtttgacCTGGGTACTCCTCTGTTTCTTGGCTGGGTGGGATCAGCTTTCCATATGACAGGGGGTTGGTTCTACTTGGTCTCTGTGTGCAAACTGCTCTGTGGGGACGAGAGCGAAACCATAGTCATCCCTGAACTTCCCGAGGTTGAGAGCGACCAGGCCAAGTCCACCACACCACAGTCCCCAGTATCCCAGATCACCTCAAAGATCAAGGTTCCATCTGCATCTAAGATTTCTTCAAAATCTGCAGGCTCAGATGTGTCTGCCATCTCCTCAAGGTCTGGTCAGTCCGGTCGCGCGTCCAAATCAGAGCGGTCTGGGCGGTCCTCAAACTCCGTGCAGTCCTCGAAATCTGGCGGTGGGTCTTTGACGTCTGGTCGTTCATCGAGGTCGAGGTCTCATGGGTCAGTGCACTCTGAGGTGAGCAGCGGCAGCAGTAGTACAGTGTCCTCTTTATCCAGTGGGTcaaggaggagcgagagagaaccGTTTATCAAAAACTCCTACATATGACCTGGTTCTGTTCAAGTATGTGTGATTTTGACTGGATTGAACTGAAGTAAcaattgtatatactgtatatgatgaTTAGGGCTGTCAGAGTTAATCCGTTAACTTTATGGAATTTTAGTGAACTACTGTTCTTTAAATCGGGATTAACCTCATTGTCTGAAAGCTTTCAAAATACAGTGAGAATATCCAAAATACATAATTTACACAGCTAAAAAAAACAATTCGATGTCAAAACACATTAACAATGAGGTTAAATTAAGTGTGCTTTATCAATTTACCTGATTTGCTAACCGTTGCTTTGGACAACTCAATTTGAGCAAATTCTGAATTTGCGATGAATCACAACAAATCCTTTGATTAACTCGATTAAATGTTTGAATCGTATGACAGCCCAACGATGATCCAATTGTGAATCTGTATGTGGGGGAATGTTTCTGTATCTAATGGCTTTTTATCCTGGGTGTGTTTCACTATCATTAAATCAAATGCTTCATCA

Function

NR:

description
claudin-10-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036951385.1 True 2476 mRNA 0.46 5 20167233 20170345

Neighbor

gene id symbol gene type direction distance location
LOC110495779 LOC106575341 coding upstream 2769 20162785 ~ 20164464 (+)
LOC110495776 LOC106574545 coding upstream 56615 20065965 ~ 20110618 (+)
LOC110495777 LOC106574545 coding upstream 118179 19992559 ~ 20049054 (+)
timmdc1 cc001 coding upstream 184283 19975014 ~ 19982950 (+)
poglut1 poglut1 coding upstream 192222 19969508 ~ 19975011 (+)
LOC110495784 LOC106574551 coding downstream 36139 20206484 ~ 20236753 (+)
LOC110497092 NA coding downstream 74009 20244354 ~ 20245888 (+)
LOC110495788 LOC106574550 coding downstream 125672 20296017 ~ 20302100 (+)
LOC110495791 LOC106575306 coding downstream 143192 20312098 ~ 20328610 (+)
LOC110495794 LOC106574560 coding downstream 357334 20527679 ~ 20552117 (+)
G1524034 LOC106575314 non-coding upstream 40305 20125068 ~ 20126928 (+)
G1524032 NA non-coding upstream 42646 20123848 ~ 20124587 (+)
G1523997 LOC106575314 non-coding upstream 49020 20052769 ~ 20118213 (+)
G1523994 NA non-coding upstream 62382 20049902 ~ 20104851 (+)
G1523962 NA non-coding upstream 181080 19985722 ~ 19986153 (+)
G1524059 NA non-coding downstream 21990 20192335 ~ 20192563 (+)
G1524069 NA non-coding downstream 40920 20211265 ~ 20212004 (+)
G1524092 NA non-coding downstream 79933 20250278 ~ 20250488 (+)
G1524097 NA non-coding downstream 88842 20259187 ~ 20260077 (+)
LOC110495771 LOC106574539 other upstream 267214 19897030 ~ 19900020 (+)
G1523847 NA other upstream 339267 19775092 ~ 19827966 (+)
LOC110495769 LOC106575326 other upstream 406213 19748427 ~ 19761242 (+)
G1524124 LOC106574554 other downstream 135360 20305705 ~ 20306904 (+)
G1524181 LOC106574559 other downstream 303015 20473360 ~ 20483713 (+)
G1525320 NA other downstream 586346 20756691 ~ 20757412 (+)
LOC110497098 LOC106574424 other downstream 2429068 22599016 ~ 22641368 (+)

Expression


Co-expression Network